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| Field | Value |
|---|---|
| Gene ID | Lj6g3v2078140 |
| Transcript ID | Lj6g3v2078140.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Secretory carrier-associated membrane protein [Medicago truncatula] gi|357446395|ref|XP_003593475.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 276 | 276 | 5.70E-201 | ||
| Phobius | 1 | 122 | 122 | – | – | |
| MobiDBLite | 1 | 35 | 35 | – | – | |
| PANTHER | 1 | 276 | 276 | 5.70E-201 | – | |
| Coils | 56 | 88 | 33 | – | – | |
| Pfam | 96 | 267 | 172 | 4.70E-54 | ||
| Phobius | 123 | 148 | 26 | – | – | |
| TMHMM | 126 | 148 | 23 | – | – | |
| Phobius | 149 | 153 | 5 | – | – | |
| TMHMM | 152 | 174 | 23 | – | – | |
| Phobius | 154 | 174 | 21 | – | – | |
| Phobius | 175 | 193 | 19 | – | – | |
| TMHMM | 193 | 215 | 23 | – | – | |
| Phobius | 194 | 215 | 22 | – | – | |
| Phobius | 216 | 234 | 19 | – | – | |
| Phobius | 235 | 258 | 24 | – | – | |
| TMHMM | 235 | 257 | 23 | – | – | |
| Phobius | 259 | 276 | 18 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein transport | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj6g3v2078140.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v2078140.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.