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Lj6g3v2084660.1

Overview

Field Value
Gene ID Lj6g3v2084660
Transcript ID Lj6g3v2084660.1
Lotus japonicus genome version MG20 v3.0
Description hexose transporter 1 [Solanum lycopersicum] gi|350538321|ref|NP_001234849.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS50850
1 170 170 11.271
IPR020846
Pfam
PF00083
1 170 170 5.90E-46
IPR005828
PANTHER
PTHR23500:SF55
1 170 170 4.00E-119 –
Phobius
CYTOPLASMIC_DOMAIN
1 11 11 – –
PANTHER
PTHR23500
1 170 170 4.00E-119 –
SUPERFAMILY
SSF103473
2 167 166 9.81E-20
IPR020846
Gene3D
G3DSA:1.20.1250.20
2 77 76 7.60E-05 –
TMHMM
TMhelix
10 32 23 – –
Phobius
TRANSMEMBRANE
12 33 22 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
34 38 5 – –
TMHMM
TMhelix
39 61 23 – –
Phobius
TRANSMEMBRANE
39 60 22 – –
Phobius
CYTOPLASMIC_DOMAIN
61 121 61 – –
Phobius
TRANSMEMBRANE
122 144 23 – –
TMHMM
TMhelix
131 153 23 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
145 170 26 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016021
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Subterm of
GO:0022857
Molecular function Transmembrane transporter activity Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.
Subterm of
GO:0055085
Biological process Transmembrane transport The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj6g3v2084660.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v2084660.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.