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| Field | Value |
|---|---|
| Gene ID | Lj6g3v2116900 |
| Transcript ID | Lj6g3v2116900.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable homogentisate phytyltransferase 1, chloroplastic-like [Glycine max] gi|356537075|ref|XP_003537056.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 64 | 64 | – | – | |
| PANTHER | 4 | 353 | 350 | 2.80E-167 | – | |
| PANTHER | 4 | 353 | 350 | 2.80E-167 | – | |
| TMHMM | 61 | 83 | 23 | – | – | |
| Phobius | 65 | 84 | 20 | – | – | |
| Pfam | 76 | 337 | 262 | 1.30E-35 | ||
| Phobius | 85 | 90 | 6 | – | – | |
| Phobius | 91 | 112 | 22 | – | – | |
| TMHMM | 93 | 115 | 23 | – | – | |
| Phobius | 113 | 137 | 25 | – | – | |
| Phobius | 138 | 161 | 24 | – | – | |
| TMHMM | 138 | 160 | 23 | – | – | |
| Phobius | 162 | 167 | 6 | – | – | |
| Phobius | 168 | 187 | 20 | – | – | |
| TMHMM | 170 | 187 | 18 | – | – | |
| Phobius | 188 | 192 | 5 | – | – | |
| Phobius | 193 | 214 | 22 | – | – | |
| TMHMM | 194 | 216 | 23 | – | – | |
| Phobius | 215 | 225 | 11 | – | – | |
| Phobius | 226 | 248 | 23 | – | – | |
| TMHMM | 231 | 248 | 18 | – | – | |
| Phobius | 249 | 273 | 25 | – | – | |
| TMHMM | 274 | 296 | 23 | – | – | |
| Phobius | 274 | 292 | 19 | – | – | |
| Phobius | 293 | 303 | 11 | – | – | |
| Phobius | 304 | 322 | 19 | – | – | |
| TMHMM | 306 | 323 | 18 | – | – | |
| Phobius | 323 | 333 | 11 | – | – | |
| Phobius | 334 | 352 | 19 | – | – | |
| Phobius | 353 | 353 | 1 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transferase activity, transferring alkyl or aryl (other than methyl) groups | Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor). |
Expression pattern of Lj6g3v2116900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v2116900.1, powered by CORGI.
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