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Lj6g3v2192320.1

Overview

Field	Value
Gene ID	Lj6g3v2192320
Transcript ID	Lj6g3v2192320.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera] gi\|359488027\|ref\|XP_002269288.2\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR23155 View details on PTHR23155 Search for proteins/transripts with this domain View external data on PTHR23155	45	226	182	5.70E-34	–
PANTHER	PTHR23155:SF554 View details on PTHR23155:SF554 Search for proteins/transripts with this domain View external data on PTHR23155:SF554	45	226	182	5.70E-34	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	70	90	21	–	–
SUPERFAMILY	SSF52540 View details on SSF52540 Search for proteins/transripts with this domain View external data on SSF52540	97	213	117	5.54E-12	IPR027417 Show description in modal box View details on IPR027417 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00931 View details on PF00931 Search for proteins/transripts with this domain View external data on PF00931	103	224	122	1.40E-10	IPR002182 Show description in modal box View details on IPR002182 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.300 View details on G3DSA:3.40.50.300 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.300	104	220	117	1.20E-06	IPR027417 Show description in modal box View details on IPR027417 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0043531 View details of GO:0043531 AmiGO InterPro QuickGO	Molecular function	ADP binding	Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate.	Subterm of View details of GO:0032559 View details of GO:0043168

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj6g3v2192320.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v2192320.1, powered by CORGI.

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