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Lj6g3v2193630.1

Overview

Field Value
Gene ID Lj6g3v2193630
Transcript ID Lj6g3v2193630.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: root phototropism protein 3-like [Glycine max] gi|356554757|ref|XP_003545709.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR32370:SF6
14 274 261 0
IPR029959
PANTHER
PTHR32370
14 274 261 0 –
SUPERFAMILY
SSF54695
34 131 98 2.51E-14
IPR011333
Gene3D
G3DSA:3.30.710.10
40 131 92 1.20E-10 –
SMART
SM00225
46 144 99 4.60E-04
IPR000210
ProSiteProfiles
PS50097
46 114 69 9.827
IPR000210
ProSiteProfiles
PS51649
228 541 314 93.198
IPR027356
Pfam
PF03000
228 517 290 1.60E-97
IPR027356
PANTHER
PTHR32370:SF6
296 671 376 0
IPR029959
PANTHER
PTHR32370
296 671 376 0 –
Coils
Coil
587 621 35 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0016567
Biological process Protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
Subterm of

Genome browser

LORE1 insertions 34

Expression data

Expression pattern

Expression pattern of Lj6g3v2193630.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v2193630.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.