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Lj6g3v2204790.2

Overview

Field Value
Gene ID Lj6g3v2204790
Transcript ID Lj6g3v2204790.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: splicing factor 3B subunit 1-like [Cicer arietinum] gi|502077251|ref|XP_004485595.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12097
6 495 490 0 –
Gene3D
G3DSA:1.25.10.10
24 386 363 2.60E-83
IPR011989
SUPERFAMILY
SSF48371
38 292 255 2.20E-63
IPR016024
SMART
SM01349
72 307 236 0.0042 –
CDD
cd00020
160 272 113 1.99E-04 –
SUPERFAMILY
SSF48371
330 483 154 2.20E-63
IPR016024

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj6g3v2204790.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v2204790.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.