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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • cd00020
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 126 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 0.034s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj5g3v1697430.1
LjCerebrus RecName: Full=Putative E3 ubiquitin-protein ligase LIN-1; AltName: Full=Protein cerberus] gi|353558931|sp|C6L7U1.2|LIN1_LOTJA chr5 24288104 24296633 +
1 domain prediction
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Lj0g3v0048699.1
n.a. PREDICTED: AT-rich interactive domain-containing protein 2 [Vitis vinifera] gi|225432860|ref|XP_002283908.1| chr0 16448541 16463430 +
1 domain prediction
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Lj0g3v0072459.1
n.a. Photosystem I P700 chlorophyll a apoprotein [Medicago truncatula] gi|357463453|ref|XP_003602008.1| chr0 26881203 26882884 -
1 domain prediction
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Lj0g3v0076489.1
n.a. PREDICTED: U-box domain-containing protein 13-like [Cicer arietinum] gi|502174874|ref|XP_004515619.1| chr0 29166796 29174490 +
1 domain prediction
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Lj0g3v0076649.1
n.a. PREDICTED: vacuolar protein 8-like [Glycine max] gi|356532060|ref|XP_003534592.1| chr0 29291299 29293291 +
1 domain prediction
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Lj0g3v0078379.1
n.a. PREDICTED: U-box domain-containing protein 14-like [Glycine max] gi|356524336|ref|XP_003530785.1| chr0 30164640 30165155 +
1 domain prediction
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Lj0g3v0162479.1
n.a. PREDICTED: U-box domain-containing protein 7-like [Glycine max] gi|356555412|ref|XP_003546026.1| chr0 76621602 76624789 -
1 domain prediction
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Lj0g3v0179259.1
n.a. PREDICTED: armadillo repeat-containing kinesin-like protein 2-like [Glycine max] gi|356532089|ref|XP_003534606.1| chr0 87006597 87011369 +
1 domain prediction
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Lj0g3v0179269.1
n.a. PREDICTED: LOW QUALITY PROTEIN: armadillo repeat-containing kinesin-like protein 2-like [Cicer arietinum] gi|502104771|ref|XP_004492644.1| chr0 87012005 87013995 +
1 domain prediction
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Lj0g3v0180319.1
n.a. PREDICTED: LOW QUALITY PROTEIN: importin subunit alpha-1-like [Glycine max] gi|356521809|ref|XP_003529543.1| chr0 87722407 87723520 -
1 domain prediction
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Lj0g3v0188449.2
n.a. PREDICTED: U-box domain-containing protein 4-like [Cicer arietinum] gi|502129552|ref|XP_004500342.1| chr0 92100909 92112078 -
1 domain prediction
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Lj0g3v0200239.1
n.a. U-box domain-containing protein [Medicago truncatula] gi|357514475|ref|XP_003627526.1| chr0 98752758 98760421 -
1 domain prediction
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Lj0g3v0230519.1
n.a. Photosystem I P700 chlorophyll a apoprotein [Medicago truncatula] gi|357463453|ref|XP_003602008.1| chr0 119415477 119418526 +
1 domain prediction
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Lj0g3v0235399.1
n.a. Armadillo/beta-catenin-like repeat, C2 calcium/lipid-binding domain (CaLB) protein isoform 1 [Theobroma cacao] gi|508724457|gb|EOY16354.1| chr0 121975395 121986177 +
1 domain prediction
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Lj0g3v0248689.1
n.a. PREDICTED: protein ARABIDILLO 1-like [Cicer arietinum] gi|502090026|ref|XP_004489097.1| chr0 128895576 128896850 -
1 domain prediction
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Lj0g3v0248789.1
n.a. PREDICTED: protein ARABIDILLO 1-like [Glycine max] gi|356568604|ref|XP_003552500.1| chr0 128931432 128934505 +
1 domain prediction
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Lj0g3v0250269.1
n.a. PREDICTED: hsp70-binding protein 1-like [Glycine max] gi|356496082|ref|XP_003516899.1| chr0 129744879 129749252 +
1 domain prediction
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Lj0g3v0252669.1
n.a. PREDICTED: U-box domain-containing protein 14-like [Glycine max] gi|356524336|ref|XP_003530785.1| chr0 131072397 131073677 -
1 domain prediction
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Lj0g3v0261839.1
n.a. U-box domain-containing protein [Medicago truncatula] gi|357456825|ref|XP_003598693.1| chr0 135686544 135690720 -
1 domain prediction
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Lj0g3v0274039.1
n.a. U-box domain-containing protein [Medicago truncatula] gi|357438777|ref|XP_003589665.1| chr0 142049615 142057959 -
1 domain prediction
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Lj0g3v0274039.2
n.a. U-box domain-containing protein [Medicago truncatula] gi|357438777|ref|XP_003589665.1| chr0 142049615 142055794 -
1 domain prediction
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Lj0g3v0274989.1
n.a. Importin subunit alpha-2 [Medicago truncatula] gi|357475937|ref|XP_003608254.1| chr0 142631409 142633639 -
1 domain prediction
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Lj0g3v0279399.1
n.a. PREDICTED: serine/threonine-protein kinase TIO-like [Cicer arietinum] gi|502164656|ref|XP_004513201.1| chr0 144996003 145008991 -
1 domain prediction
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Lj0g3v0279399.2
n.a. PREDICTED: serine/threonine-protein kinase TIO-like [Cicer arietinum] gi|502164656|ref|XP_004513201.1| chr0 144996003 145009188 -
1 domain prediction
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Lj0g3v0279399.4
n.a. PREDICTED: serine/threonine-protein kinase TIO-like [Cicer arietinum] gi|502164656|ref|XP_004513201.1| chr0 144997974 145009188 -
1 domain prediction
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Lj0g3v0286609.1
n.a. PREDICTED: vacuolar protein 8-like [Glycine max] gi|356522654|ref|XP_003529961.1| chr0 148895010 148897537 -
1 domain prediction
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Lj0g3v0300339.1
n.a. PREDICTED: U-box domain-containing protein 5-like [Cicer arietinum] gi|502153254|ref|XP_004509274.1| chr0 156045330 156052030 +
1 domain prediction
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Lj0g3v0301919.1
n.a. PREDICTED: protein FAM203A-like [Cicer arietinum] gi|502158595|ref|XP_004511210.1| chr0 156962541 156975445 -
1 domain prediction
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Lj0g3v0319829.1
n.a. PREDICTED: U-box domain-containing protein 14-like [Glycine max] gi|356524336|ref|XP_003530785.1| chr0 166940659 166941852 -
1 domain prediction
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Lj0g3v0326939.1
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502109543|ref|XP_004493669.1| chr0 170898222 170899504 +
1 domain prediction
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Lj0g3v0328059.1
n.a. PREDICTED: U-box domain-containing protein 14-like [Glycine max] gi|356524336|ref|XP_003530785.1| chr0 171480275 171480709 +
1 domain prediction
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Lj0g3v0331289.1
n.a. PREDICTED: U-box domain-containing protein 8-like [Cicer arietinum] gi|502142430|ref|XP_004504954.1| chr0 173140640 173142964 +
1 domain prediction
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Lj0g3v0343689.1
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502109543|ref|XP_004493669.1| chr0 180194569 180204934 -
1 domain prediction
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Lj0g3v0343689.2
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502109543|ref|XP_004493669.1| chr0 180197934 180204934 -
1 domain prediction
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Lj0g3v0343689.3
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502109543|ref|XP_004493669.1| chr0 180200209 180204251 -
1 domain prediction
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Lj0g3v0354239.1
n.a. PREDICTED: U-box domain-containing protein 4-like [Glycine max] gi|356569539|ref|XP_003552957.1| chr0 186547902 186551887 -
1 domain prediction
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Lj0g3v0363829.1
n.a. ARM repeat superfamily protein [Theobroma cacao] gi|508725730|gb|EOY17627.1| chr0 191979751 191983250 +
1 domain prediction
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Lj1g3v0053660.1
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502159272|ref|XP_004511450.1| chr1 619184 628227 -
1 domain prediction
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Lj1g3v0053660.3
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502159272|ref|XP_004511450.1| chr1 619184 628268 -
1 domain prediction
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Lj1g3v0415480.1
n.a. PREDICTED: U-box domain-containing protein 38-like [Cicer arietinum] gi|502133980|ref|XP_004501958.1| chr1 5320888 5323441 -
1 domain prediction
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Lj1g3v0449060.1
n.a. n.a. chr1 6015729 6018980 -
1 domain prediction
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Lj1g3v0998740.1
n.a. PREDICTED: importin subunit beta-1-like [Cicer arietinum] gi|502136423|ref|XP_004502681.1| chr1 12668543 12673082 +
1 domain prediction
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Lj1g3v1008930.1
n.a. PREDICTED: U-box domain-containing protein 43-like [Glycine max] gi|356518651|ref|XP_003527992.1| chr1 12869719 12875003 -
1 domain prediction
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Lj1g3v1290370.1
n.a. U-box domain-containing protein [Medicago truncatula] gi|357519821|ref|XP_003630199.1| chr1 15383382 15384887 -
1 domain prediction
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Lj1g3v1719010.1
n.a. Tetratricopeptide repeat protein [Medicago truncatula] gi|358345504|ref|XP_003636817.1| chr1 20176054 20179008 +
1 domain prediction
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Lj1g3v1754610.1
n.a. PREDICTED: U-box domain-containing protein 30-like [Glycine max] gi|356554018|ref|XP_003545347.1| chr1 20475106 20477160 +
1 domain prediction
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Lj1g3v1819880.1
n.a. U-box domain-containing protein [Medicago truncatula] gi|357466041|ref|XP_003603305.1| chr1 22190438 22192042 -
1 domain prediction
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Lj1g3v2379130.1
n.a. Integrator complex subunit [Medicago truncatula] gi|357506205|ref|XP_003623391.1| chr1 28147271 28153216 +
1 domain prediction
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Lj1g3v2379130.3
n.a. Integrator complex subunit [Medicago truncatula] gi|357506205|ref|XP_003623391.1| chr1 28147271 28153216 +
1 domain prediction
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Lj1g3v2739210.1
n.a. PREDICTED: U-box domain-containing protein 15-like [Glycine max] gi|356530052|ref|XP_003533598.1| chr1 31474305 31478297 +
1 domain prediction
 –