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| Field | Value |
|---|---|
| Gene ID | Lj6g3v2218360 |
| Transcript ID | Lj6g3v2218360.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Auxin-induced protein 5NG4 [Medicago truncatula] gi|357445675|ref|XP_003593115.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | – | – | |
| Phobius | 1 | 6 | 6 | – | – | |
| SignalP | 1 | 19 | 19 | – | – | |
| PANTHER | 3 | 343 | 341 | 1.50E-155 | ||
| PANTHER | 3 | 343 | 341 | 1.50E-155 | – | |
| Pfam | 6 | 148 | 143 | 8.70E-12 | ||
| Phobius | 7 | 14 | 8 | – | – | |
| TMHMM | 7 | 29 | 23 | – | – | |
| Phobius | 15 | 19 | 5 | – | – | |
| Phobius | 20 | 34 | 15 | – | – | |
| Phobius | 35 | 57 | 23 | – | – | |
| TMHMM | 39 | 57 | 19 | – | – | |
| SUPERFAMILY | 41 | 146 | 106 | 8.89E-06 | – | |
| Phobius | 58 | 68 | 11 | – | – | |
| Phobius | 69 | 88 | 20 | – | – | |
| TMHMM | 69 | 88 | 20 | – | – | |
| Phobius | 89 | 93 | 5 | – | – | |
| Phobius | 94 | 120 | 27 | – | – | |
| TMHMM | 98 | 120 | 23 | – | – | |
| Phobius | 121 | 131 | 11 | – | – | |
| Phobius | 132 | 158 | 27 | – | – | |
| TMHMM | 136 | 158 | 23 | – | – | |
| Phobius | 159 | 177 | 19 | – | – | |
| Phobius | 178 | 197 | 20 | – | – | |
| TMHMM | 178 | 197 | 20 | – | – | |
| Pfam | 179 | 319 | 141 | 2.50E-12 | ||
| Phobius | 198 | 208 | 11 | – | – | |
| Phobius | 209 | 230 | 22 | – | – | |
| TMHMM | 210 | 232 | 23 | – | – | |
| Phobius | 231 | 249 | 19 | – | – | |
| SUPERFAMILY | 236 | 323 | 88 | 3.92E-09 | – | |
| TMHMM | 247 | 269 | 23 | – | – | |
| Phobius | 250 | 269 | 20 | – | – | |
| Phobius | 270 | 275 | 6 | – | – | |
| TMHMM | 274 | 296 | 23 | – | – | |
| Phobius | 276 | 295 | 20 | – | – | |
| Phobius | 296 | 300 | 5 | – | – | |
| Phobius | 301 | 319 | 19 | – | – | |
| TMHMM | 301 | 320 | 20 | – | – | |
| Phobius | 320 | 354 | 35 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of Lj6g3v2218360.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v2218360.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.