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Lj6g3v2218670.1

Overview

Field Value
Gene ID Lj6g3v2218670
Transcript ID Lj6g3v2218670.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: dnaJ-like protein R260-like [Glycine max] gi|356525890|ref|XP_003531554.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF46565
42 115 74 1.70E-21
IPR001623
Gene3D
G3DSA:1.10.287.110
43 115 73 8.30E-22
IPR001623
SMART
SM00271
47 107 61 3.40E-20
IPR001623
CDD
cd06257
48 104 57 1.68E-18
IPR001623
ProSiteProfiles
PS50076
48 115 68 17.391
IPR001623
PANTHER
PTHR24078
48 130 83 5.60E-22 –
Pfam
PF00226
48 112 65 3.30E-20
IPR001623
PRINTS
PR00625
51 69 19 1.20E-06
IPR001623
PRINTS
PR00625
69 84 16 1.20E-06
IPR001623
PRINTS
PR00625
87 107 21 1.20E-06
IPR001623
MobiDBLite
mobidb-lite
147 173 27 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj6g3v2218670.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v2218670.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.