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| Field | Value |
|---|---|
| Gene ID | Lj6g3v2258860 |
| Transcript ID | Lj6g3v2258860.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Aspartic proteinase-like protein [Medicago truncatula] gi|357482719|ref|XP_003611646.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 26 | 26 | – | – | |
| Phobius | 1 | 26 | 26 | – | – | |
| Phobius | 1 | 7 | 7 | – | – | |
| PANTHER | 8 | 359 | 352 | 2.80E-192 | – | |
| PANTHER | 8 | 359 | 352 | 2.80E-192 | ||
| Phobius | 8 | 21 | 14 | – | – | |
| Phobius | 22 | 26 | 5 | – | – | |
| Phobius | 27 | 360 | 334 | – | – | |
| SUPERFAMILY | 79 | 359 | 281 | 6.46E-67 | ||
| Gene3D | 80 | 248 | 169 | 8.20E-38 | ||
| CDD | 82 | 306 | 225 | 4.71E-58 | – | |
| Pfam | 83 | 247 | 165 | 9.60E-39 | ||
| ProSiteProfiles | 83 | 360 | 278 | 31.326 | ||
| PRINTS | 89 | 109 | 21 | 1.40E-06 | ||
| ProSitePatterns | 98 | 109 | 12 | – | ||
| PRINTS | 241 | 254 | 14 | 1.40E-06 | ||
| Gene3D | 260 | 359 | 100 | 5.50E-17 | ||
| Pfam | 267 | 359 | 93 | 9.90E-15 | ||
| PRINTS | 294 | 305 | 12 | 1.40E-06 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Aspartic-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of Lj6g3v2258860.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v2258860.1, powered by CORGI.
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