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LotjaGi0g1v0000600.1

Overview

Field Value
Gene ID LotjaGi0g1v0000600
Transcript ID LotjaGi0g1v0000600.1
Lotus japonicus genome version Gifu v1.2
Description Agenet domain protein; TAIR: AT1G06340.1 Plant Tudor-like protein; Swiss-Prot: sp|F4I8W1|DUF2_ARATH DUF724 domain-containing protein 2; TrEMBL-Plants: tr|I1KEN6|I1KEN6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi0g1v0000600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr0:1444172..1444685) extracted from Lotus japonicus Gifu genome v1.2.

CTCTATCACAGAAACAACGTTAAGAAGTTGAAGAAATGGCTCCTCCGCGTGCTTATAGCATTTTCGACAAAGTCGAAGTG ATCGGTTATGAGCAAGGTTTCCTCGGTTCATATTATGAGGCCACTGTTGTCTCTGTCCTGGGCGACGGTCGCTATCAGGT TCTATACAAGAACCTTATAGAGGATGAGGAGACCAAGATTCCTATAAAGGAGAAGCTATTCCCGAGGGTCCTCCGCCCAA GGCCACCTCGTGTCCGAACCGTTGAGTTCAAGGTGGGCCAGAATGTGGATGTGTTCATCAACGAAGGGTGGTGGATTGGG AAGATCGTCGCGGTTGACATCGAGAGGTCCCTTTACATGGTTTACTTCAGATCCACCAACAAGATCACTGAGTACCATTC TTCCAGCATTAGGGTTCACCAGGATCTTATTGATGGGTTGTGGTACCAAAGTGGTCCCTAGCTAGCTAGGGTTTGTGGAT TTGTAATAACAAATAATTAAGACTCTGTTTTTTA
Download Genomic Sequence

CDS sequence (LotjaGi0g1v0000600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTCCTCCGCGTGCTTATAGCATTTTCGACAAAGTCGAAGTGATCGGTTATGAGCAAGGTTTCCTCGGTTCATATTA TGAGGCCACTGTTGTCTCTGTCCTGGGCGACGGTCGCTATCAGGTTCTATACAAGAACCTTATAGAGGATGAGGAGACCA AGATTCCTATAAAGGAGAAGCTATTCCCGAGGGTCCTCCGCCCAAGGCCACCTCGTGTCCGAACCGTTGAGTTCAAGGTG GGCCAGAATGTGGATGTGTTCATCAACGAAGGGTGGTGGATTGGGAAGATCGTCGCGGTTGACATCGAGAGGTCCCTTTA CATGGTTTACTTCAGATCCACCAACAAGATCACTGAGTACCATTCTTCCAGCATTAGGGTTCACCAGGATCTTATTGATG GGTTGTGGTACCAAAGTGGTCCCTAG
Download CDS Sequence

Protein sequence (LotjaGi0g1v0000600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAPPRAYSIFDKVEVIGYEQGFLGSYYEATVVSVLGDGRYQVLYKNLIEDEETKIPIKEKLFPRVLRPRPPRVRTVEFKV GQNVDVFINEGWWIGKIVAVDIERSLYMVYFRSTNKITEYHSSSIRVHQDLIDGLWYQSGP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00743
5 74 70 2.4E-7
IPR014002
PANTHER
PTHR31917
11 139 129 3.7E-31 –
PANTHER
PTHR31917:SF45
11 139 129 3.7E-31 –
Pfam
PF05641
11 71 61 6.9E-13
IPR008395
SMART
SM00743
76 133 58 5.3E-8
IPR014002

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi0g1v0000600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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