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| Field | Value |
|---|---|
| Gene ID | LotjaGi0g1v0000700 |
| Transcript ID | LotjaGi0g1v0000700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Agenet domain protein; TAIR: AT1G06340.1 Plant Tudor-like protein; Swiss-Prot: sp|Q9FZD9|DUF3_ARATH DUF724 domain-containing protein 3; TrEMBL-Plants: tr|I1KEN6|I1KEN6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi0g1v0000700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr0:1490137..1491128) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTCACTCTGAATCCCAAAATAAACAAAATCTTCAAATAAAATGAAATCTAACCCATCGTATAAAAAGACCACTCACT CCTTGTTCAAGACTCACAAACCAAACCAAACAAACAAACCAACTGCAATTCTCTAATTCTCTCCCTCTCTCAAAGAAAGA ATTTTCCGGCGGCGATCGAAATGCGTCCTCCGCAGAGAACGGTGGTTTACAAAGTCGGCGATGAGGTGGAAGTGATCGGA AAGGAAGAAGGCTTCTACACCTCATACTACGAGGCCACCGTCGTCTCCCTCCTCCCTTTCGGCCGCTATGAAGTCCAGTA CAAGACGCTGATCGTGGACGAGGAGACCAAGATTCCGCTGAAGGAGGCGGTGCTGGCGAAGGACCTCCGCCCTGTGCCGC CGCTTGTCAACACCCGCGGCGAGTACAAGCTGTACCAGGCGGTGAACACGTTCGACAACGACGGGTGGTGGTACGGGATG ATAGTTGGAAGGATCAGCTGCACTGGCGGCAAGGGTTACAACGTCTACTTCAGTTCCACCAACGAGACGCTTCCGTACAA CTGTTCTCGCATCAGGGTTCACCATGAATTCTTTGATGCAGAGTGGCAACAAATTGATTAGTATTATTCATCGATCTGTC ATCAATTGCCCAATTTTGTGTTCTTGCAATTATGGGTTTATAGATCTTTTTCTTTATTCGGTTTCTTGGAATTTGGATAA TGGGGTTATGGCTCATGGGTTCTGTTTCAATTAATGGATGCTAGAGAGTAGAGAGATTATTATGTTTCGTCTGTGATTTT GTAAAATTGGCAATTGGAAATTAATACAAGTCCTTTAATTTCAATTCAGTTTCTTTCTGCTTTCTCTCTGTACTTTTCTC TCTGCTTTCTTTTGTTTTTGTTTCATTATTCTTTTGTTTACTTTCTCAGTTTATGTTTGATTTTGTGTGAGTTGTTGTTG GACAGTTGGAATGAAAAATCCTTTATTCTCTC
CDS sequence (LotjaGi0g1v0000700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGTCCTCCGCAGAGAACGGTGGTTTACAAAGTCGGCGATGAGGTGGAAGTGATCGGAAAGGAAGAAGGCTTCTACAC CTCATACTACGAGGCCACCGTCGTCTCCCTCCTCCCTTTCGGCCGCTATGAAGTCCAGTACAAGACGCTGATCGTGGACG AGGAGACCAAGATTCCGCTGAAGGAGGCGGTGCTGGCGAAGGACCTCCGCCCTGTGCCGCCGCTTGTCAACACCCGCGGC GAGTACAAGCTGTACCAGGCGGTGAACACGTTCGACAACGACGGGTGGTGGTACGGGATGATAGTTGGAAGGATCAGCTG CACTGGCGGCAAGGGTTACAACGTCTACTTCAGTTCCACCAACGAGACGCTTCCGTACAACTGTTCTCGCATCAGGGTTC ACCATGAATTCTTTGATGCAGAGTGGCAACAAATTGATTAG
Protein sequence (LotjaGi0g1v0000700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRPPQRTVVYKVGDEVEVIGKEEGFYTSYYEATVVSLLPFGRYEVQYKTLIVDEETKIPLKEAVLAKDLRPVPPLVNTRG EYKLYQAVNTFDNDGWWYGMIVGRISCTGGKGYNVYFSSTNETLPYNCSRIRVHHEFFDAEWQQID
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 143 | 136 | 2.0E-31 | – | |
| PANTHER | 8 | 143 | 136 | 2.0E-31 | – | |
| SMART | 8 | 77 | 70 | 6.3E-15 | ||
| Pfam | 13 | 74 | 62 | 3.0E-15 | ||
| SMART | 80 | 139 | 60 | 0.51 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi0g1v0000700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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