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| Field | Value |
|---|---|
| Gene ID | LotjaGi0g1v0002000 |
| Transcript ID | LotjaGi0g1v0002000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Xyloglucan endotransglucosylase/hydrolase; TAIR: AT2G36870.1 xyloglucan endotransglucosylase/hydrolase 32; Swiss-Prot: sp|Q9SJL9|XTH32_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 32; TrEMBL-Plants: tr|A0A1J7GMC9|A0A1J7GMC9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi0g1v0002000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr0:1937957..1938768) extracted from Lotus japonicus Gifu genome v1.2.
CCTAACTTTTTCTTCATGGCTCTGATATTTCTCTTTGCTATTTTACTCTTTATGATGGCGCCTTCAAGCAATGCCTATTG GCCACCTTCACCTGGCTACTGGCCAAGTTCAAAATTCAGGTCTACGAGCTTTAACAAAGGTTATAGAAACCTTTGGGGCC CTTCACACCAAAGACTAGATCAAAATGCATTAACAATTTGGCTTGACAGGACCTCAGGTCTGAATCTGATTTGTTTCAAT TCACTTTAAACTCTTCATCTATTTGCTATGTATCATTGAAAATTTAACATAATTTTGTTTCTTGTTTTCAGGAAGCGGCT TCAAATCGGTTCGCCCATTTCGATCCGGGTACTTTGGTGCTTCTATTAAGCTCCATCCTGGGTATACTGCAGGAGTTATA ACAGCTTTTTATGTAAGAAATGATCTAATGATTTGATAAAAGGATAAGAATTCGTTTGAAACTCTAATAAGCTCCAGTGA GTCTGTATCCAAACAGGCTTTTAAGTTGAATGGTGGAAACTTACACATTCACATTTTGTTCAAGTTTGGTGCCTAATTGA TTGCTAATTATTTTGATGAATGCATGGCAGCTTTCGAACAATGAAGCGCATCCGGGTTTCCATGATGAAGTGGACATTGA GTTTCTGGGGACTACATTTGGAAAGCCTTATACTTTGCAAACCAATGTTTATATAAGAGGGAGTGGTGATGGGAAAATTA TAGGCAGAGAGATGAAGTTCCACCTCTGGTTTGATCCTACCAGACATTTTCATCACTATGCTATTCTTTGGAGTCCTAAT GAAATAATGTAA
CDS sequence (LotjaGi0g1v0002000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCTGATATTTCTCTTTGCTATTTTACTCTTTATGATGGCGCCTTCAAGCAATGCCTATTGGCCACCTTCACCTGG CTACTGGCCAAGTTCAAAATTCAGGTCTACGAGCTTTAACAAAGGTTATAGAAACCTTTGGGGCCCTTCACACCAAAGAC TAGATCAAAATGCATTAACAATTTGGCTTGACAGGACCTCAGGAAGCGGCTTCAAATCGGTTCGCCCATTTCGATCCGGG TACTTTGGTGCTTCTATTAAGCTCCATCCTGGGTATACTGCAGGAGTTATAACAGCTTTTTATCTTTCGAACAATGAAGC GCATCCGGGTTTCCATGATGAAGTGGACATTGAGTTTCTGGGGACTACATTTGGAAAGCCTTATACTTTGCAAACCAATG TTTATATAAGAGGGAGTGGTGATGGGAAAATTATAGGCAGAGAGATGAAGTTCCACCTCTGGTTTGATCCTACCAGACAT TTTCATCACTATGCTATTCTTTGGAGTCCTAATGAAATAATGTAA
Protein sequence (LotjaGi0g1v0002000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALIFLFAILLFMMAPSSNAYWPPSPGYWPSSKFRSTSFNKGYRNLWGPSHQRLDQNALTIWLDRTSGSGFKSVRPFRSG YFGASIKLHPGYTAGVITAFYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFHLWFDPTRH FHHYAILWSPNEIM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 20 | 20 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 20 | 20 | - | – | |
| Phobius | 2 | 12 | 11 | - | – | |
| PANTHER | 8 | 174 | 167 | 3.0E-99 | – | |
| PANTHER | 8 | 174 | 167 | 3.0E-99 | – | |
| Phobius | 13 | 20 | 8 | - | – | |
| ProSiteProfiles | 18 | 174 | 157 | 22.059 | ||
| Gene3D | 19 | 174 | 156 | 7.9E-48 | – | |
| Phobius | 21 | 174 | 154 | - | – | |
| Pfam | 40 | 173 | 134 | 3.7E-34 | ||
| SUPERFAMILY | 61 | 173 | 113 | 5.54E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi0g1v0002000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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