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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0005400 |
| Transcript ID | LotjaGi1g1v0005400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane emp24 domain-containing protein; TAIR: AT3G07680.1 emp24/gp25L/p24 family/GOLD family protein; Swiss-Prot: sp|Q9S7M9|P24B2_ARATH Transmembrane emp24 domain-containing protein p24beta2; TrEMBL-Plants: tr|I3T587|I3T587_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0005400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:861007..863453) extracted from Lotus japonicus Gifu genome v1.2.
TTGCAGATGGGATTGTCGTTGATTCATGTATTGTTGTTTGCGTTAATTGGGGTCTTCTGGAACTTGAAAGCCTCTGAGGG TATCAGATTCGTCATCGATAGAGACGAGTGTTTCTCCCACGATGTCAAGTACGAGGGTGACACTGTCCATATTTCCTTCG TTGTTATTAAGGCTGATTCTCCATGGCATTACGGTGATGAAGGTGTCGATCTCGTGGTATGTTAATTTACTTCGTTTCTC ACATCGATAATTCATTTACTTTGCTTGATTCCATTCATTGTAATTGTAATCGCTTTTATATCATCAAAATTCAAATCCCA CTTGTTGTTAATTTTTATTTTTGCCTGCAACAATTCGGATGGAGAATTACAATTGACTATTAGTTAGGGTTTCTCTTAAT TGTAATTGTTTGAATTATGCTGTTTGGTGTTGATAGGAACCTGTTTCAAAATTCTATGGGAGTAAAACCATGGCACCATG GATACAAAGGGAAAACTAAATGCTTTCTCTTACATACATACATACCTGTTGGCTATTGGGTTGGGGTTTTACATTATTAG GTTAAAGCTATAATATAATGTACCTTGCCTTTCTTCATACCTGAGGGGGACTGAAGAAGCTTTTTGTGCTTTTCTGAACC ATAATTGTGGAATTGATCTTTCATTCTAGATTTCGGGATTCATTGTCAAACTTGATCCCATTTTCAAAATTTTAATTCAT TGACCATGCTGAATTATTTGGAGGACATTATAGCAAAAATGCAACCAAATACTGAAACAAGAGTTGTTTCAATAGTTAGG AGATAAAGTCATGGTTTAAAACAATTAGGAAAAAGTTCATGTTTATAGAGATTTCATGCATTATGTCTAGGAATATATTT TTTGTGTGGTATTGCCTTTACAATTAAATATAATTAGTCCACATTCAGGTATCTGTATAACTATTAGTGTGCTACTTCCC CAATCTTTTGACATTTATATCTCAAGCCTCTATGGAAATCCATATCTACATCAACTAGTAATTGGAGTATAGGAATAACC TTTCGTTGGATTTATCTATACTTTCTTTTTTTGTTTAATACCCTGCCCAATCATGTCTTTACACAACTATGTAATAATTT CAGGTAAAAGGACCTGCTGGTGAACAAATTCACGATTTTCGTGACAAGACCAGTGAAAAGTTTGAATTTGTGGCTCACAA ATCAGGAGTTCACAAATTCTGCTTCACAAACAAGTCTCCATATCATGAAACTATTGATTTTGATGTACATGTGGGTCACT TCTCTTACTACGAGCAGCATGCAAAAGATGGTAATGCCTCTTCTATTAAATCCACTTGTGTTTTCTTGTTTCTTTTTACA TGTCAGTGTAGAACCAGTCTCTTTAAGTTTCATGAAAATCTTAAAAATGAGAGAATTATCATCAAAACTGTGTCTGTCTG CAGAGCATTTCACACCTTTGCTGGAGCAGATAGCAAAGTTGGAGGAAGCTCTTTACAACATTCAGTTTGAACAACATTGG TTAGAGGCTCAAACTGACCGCCAAGCAATAGGTACTGTTTAATTTTCACTTTGATGTTCATTTTAAAATTTTCTATGCAT AAAATCCTTCATACCTATCAGTTATATATGTACACATGTTAAAAATAAAGCCCTACTTTATGTACACGGTCTGTTTTTCT ACCTCTTGTTCCAATTTGCAATTATCCTAATTCCTTTCAGCTACCATGCCAGAAAAGTGTCCCCCTGTTGATAACATCGT TTCCTGACTCTTGATAGTGTTCACTTGCTTTACTTTGAGGTCAAAGTTGATTGAACTTAGGGCTTCCTTAGTTATAAACA GTTTAATTTAACACTTATGTCAATAAGAAAAAGCTCTAAATCGTTAACTAATTTGAGAAGCTTATCGAAATAGGCTCAAA GTATGTTATAGGTAAAGTATAGGCGCTTATTCATAAGATAATCTAAACAACTTCTGAAAATAATCTCAAAATAACTTTTA GGTTGGTGATGAACTATTTACGTAAGTTTTCTCAAATACTTGCAGAAACACTTATATTATAAGATAAGCCTAAATAACCT CTTCCAAACAAGGTCTTATTCTAAAGAAGTTGAAGTTTGATACTACTGCATCTCACGCTTAAACGTGCACGCACAAGTCA GACTAATGGGCAGTCATATTTTACTGCTTAAGTGAATGAGCTATGGATTGGAGGACTAGGAACCGAGCTTAGTTGACTAA AGACACTTGTTTTCTCTATTAACTCTTGAGTGTTAATGTAATTTCATGTTCCTTATTTTTGTGTGGATTGCAGTGAATGA TGCAATGAGCCGAAGAGCAATACATAAGGCACTTTTTGAATCAGCAGCATTAATTGGCGCTAGTGCACTTCAAGTTTACC TTCTGCAGCGCTTGTTTGAGCGCAAGCTGGGAACCTCTAGAGTTTAG
CDS sequence (LotjaGi1g1v0005400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGATTGTCGTTGATTCATGTATTGTTGTTTGCGTTAATTGGGGTCTTCTGGAACTTGAAAGCCTCTGAGGGTATCAG ATTCGTCATCGATAGAGACGAGTGTTTCTCCCACGATGTCAAGTACGAGGGTGACACTGTCCATATTTCCTTCGTTGTTA TTAAGGCTGATTCTCCATGGCATTACGGTGATGAAGGTGTCGATCTCGTGGTAAAAGGACCTGCTGGTGAACAAATTCAC GATTTTCGTGACAAGACCAGTGAAAAGTTTGAATTTGTGGCTCACAAATCAGGAGTTCACAAATTCTGCTTCACAAACAA GTCTCCATATCATGAAACTATTGATTTTGATGTACATGTGGGTCACTTCTCTTACTACGAGCAGCATGCAAAAGATGAGC ATTTCACACCTTTGCTGGAGCAGATAGCAAAGTTGGAGGAAGCTCTTTACAACATTCAGTTTGAACAACATTGGTTAGAG GCTCAAACTGACCGCCAAGCAATAGTGAATGATGCAATGAGCCGAAGAGCAATACATAAGGCACTTTTTGAATCAGCAGC ATTAATTGGCGCTAGTGCACTTCAAGTTTACCTTCTGCAGCGCTTGTTTGAGCGCAAGCTGGGAACCTCTAGAGTTTAG
Protein sequence (LotjaGi1g1v0005400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLSLIHVLLFALIGVFWNLKASEGIRFVIDRDECFSHDVKYEGDTVHISFVVIKADSPWHYGDEGVDLVVKGPAGEQIH DFRDKTSEKFEFVAHKSGVHKFCFTNKSPYHETIDFDVHVGHFSYYEQHAKDEHFTPLLEQIAKLEEALYNIQFEQHWLE AQTDRQAIVNDAMSRRAIHKALFESAALIGASALQVYLLQRLFERKLGTSRV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| PANTHER | 8 | 209 | 202 | 1.1E-115 | ||
| PANTHER | 8 | 209 | 202 | 1.1E-115 | – | |
| Phobius | 15 | 22 | 8 | - | – | |
| Phobius | 23 | 212 | 190 | - | – | |
| SMART | 25 | 204 | 180 | 4.3E-40 | ||
| Pfam | 33 | 204 | 172 | 5.9E-32 | ||
| ProSiteProfiles | 33 | 120 | 88 | 15.136 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0005400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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