Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0005500.1

Overview

Field Value
Gene ID LotjaGi1g1v0005500
Transcript ID LotjaGi1g1v0005500.1
Lotus japonicus genome version Gifu v1.2
Description O-methyltransferase, putative; TAIR: AT5G54160.1 O-methyltransferase 1; Swiss-Prot: sp|P28002|COMT1_MEDSA Caffeic acid 3-O-methyltransferase; TrEMBL-Plants: tr|I3SH20|I3SH20_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0005500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:864921..868292) extracted from Lotus japonicus Gifu genome v1.2.

ATATCATTTAATTTTTGCATACAAGCTAAGTATAAATACATTGCACATCTTTTGATCTGTTGAGAGCATAGCCATTAAAC ATGGGGGAAGTAAATAATGCAAAGCAATTAGTAGTATCTGATGAAGAAGCTTTGCTTTTTGCCATGGAGTTAGCAGGGGC CTCCTCTGTTCCCATGGTTCTGAAATCAGCCTTGGACCTTGGTGTGATAGAAACCATAGCCAAGGCTGGTCCTGGAGCTT ACCTTTCACCTTCTGAGATAGCTTCTCAGATTCCATCAATAAAGAACCCGGATGCACCTTCTATGTTGAACCGTTTGTTG AGGCTCTTGGCTAGCTACAACATCCTCACCTTCCAAGGTTCTGAACCTGAAAGGCACTATGGTCTTAGTCCTTATGCCAA ATACTTTGTCAACAATCAAGATGGTGTCTCCATGATTTCTTCCTTTCTCATGCAACATGACAAAGTCCTCAAAGACATGT GGTATAGATAATAGATTCATTAGATTCTGTTTTTTTTTTTTTAAACTGTGGCAGTTCCCCCCATTTAATGATCTGAATTC GTGTCATTACCCTTACAAGAGGTCTAGTTTGCCTGCCATTAAGACTCACATTCACTAGACTTACACATAGTTGGTGATTA GATTCTATTTAACTTCATTATTTCATAACTCTTATTTCTTTTACTTCAATTGAAGCGTTTGAAATTATGCTTAGACATAT ACATATGTTTAAACTAGATTGTGTTGTTGTAGGTACCATTTGACAGATTCAATTCAGGAGGGTGGGCTTCCATTTGACAA TGCTTATGGAATGACTTCCTTTGAATTCCATGGCAAAAATCCAAGGTTCAACAATATTTTCAACAAGGGGATGTCTGATT ATTCTACCATCATAATGAAGAAAGTTCTTGAGACCTATACAGGTTTTGAGGGTTTAGGATCTGTTGTTGATGTTGGTGGT GGGACTGGAGCTGTTATTAACATGATTGTCTCTAAGTATCCCACCATTAAGGGCGTTAATTTTGACTTGCCCCATGTCAT TAAAGAAGCTCCATCTTATCCAGGTCCTTTTTTATTTTGACTGACAAATGAGTCAATTAATTATAATTTCTATTACTTAG CTTGATCCTAATTTGGTGCAGGTGTGGAGCATATTGGTGGAGACATGTTTGTCAGTGTTCCAAAAGCTGATGCCATTTTC ATGAAGGTGAGCTAATATTTTGGAATAAATTAAAGTTTCATTGACCATTGAAAAACACTCCCATAGGAAGAAAAATGAAA AATAAAAGATAAGCTGCTGAATGTTAGGGGTGTACAAGAGACGGGTTGGGACGGGTTTTGGTTAACCCTAACCCGGCCCT AAATGTTGATCGGGTCAATTCACAGACCCTAACATGTCCCTAGACCCGAAGCAACCCGACATTATGCGGGTCCAATTTAG GACGGGTCTATGTAGGATGGGACCGGGTTGGCCCGAGGGACAATAAGTTTAAGACTATTTGATACTAATTGTAAAATTTA AAGATAATAACATACTAAAAGAGTTATAAGTTGGAACTATTTTTTAGAAAAAATAACTTGAAATGATCCAATTCTTTCAT AATCTATTGCACTTGAGATGTTTACATTTTGTTTGATCATTTCTTCACTTGTCTCACATATGCATAATACACACACATGA TTTTCTCTTGTTAGAGCATGAAAGTGTCCATTGTTTGACCAACGTTTATTTAATTCATAAGGTAGATGTTAAACATTTTA ATCTCATCTACTTGGTAAGATAAATTTGAGCACCATGTATCACATTTTAATCTTTATAACAAATTAAAATTTTATAAAAT ATATATGTGGGACGGGCCGGGTGACCTGAGTGTCAACCCGAATCCGACCCTACCCGAAGTCGGGTAACTCGAAGATCAAC CCGAACCCGGTCTCTTTTAATGATCGGGCCGGGTTCAACCCGGTCCTAAAGGCTTGGGCCGGGACGGGTTGGCGGGTAGG GCCGGGTCTTGTACACCCCTACTGAATGTGATAGGGAAAAAAATAAGAGATATGAAGATAAATTAAGGAGAAATGAAATG AATTAAAAAGTGAGATGCGAATAAATCATAACTTAATTAATATTGTGTGTTTTAGATCAACGTTAGCAGAATTGTTTATA AACAAAATTGATACTAAAGTTGCGCGTGGTAAATGTAAATTAAAATGATGTGATTTATATTTGCATAGCTTTATGAAAAA AGTAGATTTTACAGCGTAATATTATGGAATTCAGTTGTAAAATTTCAGAATTGATTATATTTAACGCAAAGCAATTATTT TGGCAAGTACAATTGATTCTATATAATTGATTTTGTCGTAGTAGTGCACCCAAACATCATTTAAAAGGGTTAGAATTGAT TTTGACTAGGTAAAGTTAATTCTATAGAAATAATTGTGGTTCCAAACATGTTCTTAATTAAGCGTTTATTGAAAACACTT ATAGTATAAAAGATTATGCCCAAGAGCTCTTATATACCCATTCAGGTTTGGAGATTTTATTTTGAGAACATTTCAAAAGA GTAAAACCAAGTTGAAATAATTAATTATTGAGGATATATAATTCTACAATTTGTTATAGGGCTTCATTCATAATTAGATT TCTACCATGCATCAATTTTCTCAAATGGTATGTTTGATTTCACATTGAGAGAATGCACCTTGTGTAAATATATAGTACAT CCAAACACATTTTGACAACCCACATTTTTCTATTTGTTTATGGCAATGACAAAAACACCATGTATAAATTAATGCAGTGG ATATGTCACGATTGGAATGACGAGCAATGCTTGAAATTGTTGAAGAACTGCTATGAATCCCTTCCGGATACCGGGAAGGT GATTTTGACTGAATGCAATATTCCACAAGTCCCTGATTCTAAGTTGGCTTCAAGGTGTGTGTTCGAAATGGATGTGATCA TGTTGTGTCATAGCTCAGGAGGAAGAGAAAGAACAGCGAAAGAGTATGAGGCCTTGGCTAAGGGTGCTGGATTTCAAGGT TTTCGTGTAGCATGTTGTGCTTTCAACATGTATGTCATGGAATTTCTGAAGAAGCCTTAGCTTCTTTTTTCTTCTGCATG TTGCATTAAAGTCACAAAAGGTTCCCTATGATATGTTGTTGTCTTGATTTATAATAGTTAATTAATGAATAAGTTACTTG TAATTGATAAACTTCATGGGGATTTACTCTTTTCTGTTATGTATTCATTTTTAAGTCTTGAAATTATATATGGGTTCTTT ATTTGTGACTTCTTATGAATAAAATCATCTCTTTCTGCAATCTACACAAATGACTTATTTTTGCTTATGAATAAAATCAT CTCTTACTCCAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0005500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGGGAAGTAAATAATGCAAAGCAATTAGTAGTATCTGATGAAGAAGCTTTGCTTTTTGCCATGGAGTTAGCAGGGGC CTCCTCTGTTCCCATGGTTCTGAAATCAGCCTTGGACCTTGGTGTGATAGAAACCATAGCCAAGGCTGGTCCTGGAGCTT ACCTTTCACCTTCTGAGATAGCTTCTCAGATTCCATCAATAAAGAACCCGGATGCACCTTCTATGTTGAACCGTTTGTTG AGGCTCTTGGCTAGCTACAACATCCTCACCTTCCAAGGTTCTGAACCTGAAAGGCACTATGGTCTTAGTCCTTATGCCAA ATACTTTGTCAACAATCAAGATGGTGTCTCCATGATTTCTTCCTTTCTCATGCAACATGACAAAGTCCTCAAAGACATGT GGTACCATTTGACAGATTCAATTCAGGAGGGTGGGCTTCCATTTGACAATGCTTATGGAATGACTTCCTTTGAATTCCAT GGCAAAAATCCAAGGTTCAACAATATTTTCAACAAGGGGATGTCTGATTATTCTACCATCATAATGAAGAAAGTTCTTGA GACCTATACAGGTTTTGAGGGTTTAGGATCTGTTGTTGATGTTGGTGGTGGGACTGGAGCTGTTATTAACATGATTGTCT CTAAGTATCCCACCATTAAGGGCGTTAATTTTGACTTGCCCCATGTCATTAAAGAAGCTCCATCTTATCCAGGTGTGGAG CATATTGGTGGAGACATGTTTGTCAGTGTTCCAAAAGCTGATGCCATTTTCATGAAGTGGATATGTCACGATTGGAATGA CGAGCAATGCTTGAAATTGTTGAAGAACTGCTATGAATCCCTTCCGGATACCGGGAAGGTGATTTTGACTGAATGCAATA TTCCACAAGTCCCTGATTCTAAGTTGGCTTCAAGGTGTGTGTTCGAAATGGATGTGATCATGTTGTGTCATAGCTCAGGA GGAAGAGAAAGAACAGCGAAAGAGTATGAGGCCTTGGCTAAGGGTGCTGGATTTCAAGGTTTTCGTGTAGCATGTTGTGC TTTCAACATGTATGTCATGGAATTTCTGAAGAAGCCTTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0005500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGEVNNAKQLVVSDEEALLFAMELAGASSVPMVLKSALDLGVIETIAKAGPGAYLSPSEIASQIPSIKNPDAPSMLNRLL RLLASYNILTFQGSEPERHYGLSPYAKYFVNNQDGVSMISSFLMQHDKVLKDMWYHLTDSIQEGGLPFDNAYGMTSFEFH GKNPRFNNIFNKGMSDYSTIIMKKVLETYTGFEGLGSVVDVGGGTGAVINMIVSKYPTIKGVNFDLPHVIKEAPSYPGVE HIGGDMFVSVPKADAIFMKWICHDWNDEQCLKLLKNCYESLPDTGKVILTECNIPQVPDSKLASRCVFEMDVIMLCHSSG GRERTAKEYEALAKGAGFQGFRVACCAFNMYVMEFLKKP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:1.10.10.10
2 109 108 1.6E-34
IPR036388
PIRSF
PIRSF005739
3 357 355 5.5E-132
IPR016461
SUPERFAMILY
SSF46785
14 112 99 3.99E-27
IPR036390
PANTHER
PTHR11746:SF215
14 355 342 1.7E-143 –
PANTHER
PTHR11746
14 355 342 1.7E-143 –
ProSiteProfiles
PS51683
22 357 336 73.707
IPR016461
Pfam
PF08100
32 84 53 1.7E-22
IPR012967
Gene3D
G3DSA:3.40.50.150
110 359 250 3.8E-83 –
SUPERFAMILY
SSF53335
114 355 242 3.96E-67
IPR029063
Pfam
PF00891
134 339 206 4.2E-75
IPR001077
CDD
cd02440
198 290 93 1.02082E-4 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008171
Molecular function O-methyltransferase activity Catalysis of the transfer of a methyl group to the oxygen atom of an acceptor molecule.
Subterm of
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0005500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…