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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0005700 |
| Transcript ID | LotjaGi1g1v0005700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fimbrin-like protein 2; TAIR: AT5G35700.1 fimbrin-like protein 2; Swiss-Prot: sp|Q9FKI0|FIMB5_ARATH Fimbrin-5; TrEMBL-Plants: tr|G7K508|G7K508_MEDTR Actin-binding calponin-like (CH) domain protein; Found in the gene: LotjaGi1g1v0005700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:881568..887438) extracted from Lotus japonicus Gifu genome v1.2.
AGTGTGATTGAGTATTAGGGATTTGATTGATTGCAAAAAGGAAAATGCACAAACATTGTTAATTCCCTTTTCCCTTTCTT CTGATTCCAATTCCCATTCCCTTGGACTTCGCGGGTCCTATCGCCAAAACGTTTTTTTCTCTCCATTTCCCCATTTCTTC GTACAAACACACAAACACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGCATTTGCGCAATCATGAT GAGAAAACCTTCTCATCTTTTCTGATTCTTCAAGGTACGCACGTGTTCTTCGTTTTCTAGATCGATTTTTGTTATAGCGA TCGTAATTAATTACACATTCTCGCATCGTTGATTGATTTCGCTTCTGTAAATTTGATCGCACAGTTGTTTACCATTTTCA TCGAAACAACATGTCTGGTTTCGTGGGTGTCCTTGTTTCTGATCAGTGGCTTCAGAGCCAGTTCACCCAAGTCGAACTGA GAACCCTCAAATCCAAGGTCACTTGTTTTTTCTTTCTCTGTTGTTTGTTTCGACATGATGAAATGAAACTTAGAATCTGT TATTTTTCCTCCCTTTCTAGTATGTCTCCGAAAGAACTCAATCAGGACGTGTTACTGTCGGAAATTTACCACCTATTTTT AAGAAATTGAAGACTTTCACTCAAGTTTTCACCGAGGATGAGATTAAAGCTATCTTGGCAGACTCATATCACAACATGGA TGAAGAAATTGACTTTGAATCCTTCCTTAGGGTCAGTCACTCACTCACTCTTTTTCTTACATAATAATTCTTCAATCAAT GTACTACTTAGAATCATATTGGTAGTAGGTGTTTTATTTATATTGGGTGACAATGAATGGCAGGCACATTTAAATTTGCA AACTCGAGCCACAGCCAAAGATGGTGGTTCAAAAAGTACTTCTTCATTCTTGAAGGCGGCTACAACTACTATTCATCATG CTATTAATGAATCTGAGAAAGCTTCTTATGTTGCGCATATTAATAGCTACTTAGCTGAAGATAAATTCATGAAGCAGTTT CTTCCTATTGATCCTTCGACCGATGCATTGTTTGATCTTGCAAAAGATGGAGTCCTTCTCTGGTAAAATTTCAGCATACC ACTTCATGAGTTCAATTTTTTTAAGAGGAAATTGTAACCTTTTATTTGTCTGCTACAGCAAGCTTATTAATGTTGCTGTT CCTGGGACCATTGATGAGCGAGCTATTAACACAAAACGGGTTCTTAATCCTTGGGAGAGGAATGAGAACCACACCCTGGG TCTAAACTCAGCAAAGGCTATCGGGTGCACAGTGGTTAATATTGGAACACAGGACTTTGTTGAAGGAAGAGTAGGTTCAA TCTTTTTATTCCCTCTCTTCCTCTTCCCAATTTGTTATTCTGATTTGACGGACTTCAACTTTTTTTTAATGAAAAATTTC CTGTGTGGTTATTTGCAGCCACATCTGGTACTTGGTGTGATTTCACAAATAATCAAGGTAGACTACTGAAACTTAGTCCC TTTTTGCTTGCATATTATTATGGGGCTCAGACGAGGAGATTGACAGGATTATGAGTTCAATTATTCATCGGAAGACTTGG AAACTTACACGGTCTTTTCCGGTTGTTTAACTTTGCATTGTGGTGGCATTGACAGATTCAATTGTTAGCTGATCTCAATC TGAAGAAAACTCCTCAACTTGTGGAATTGGTGGAAGATGACAAGGTGATAATGGATAAACTTTTTCCTCTTATCTGTAGC TTGCAAGTGCCATGGTTTTATTTCATCTACATATGTCAGAACTACAACTGAAATTCACCTTTTATATCACGACTTACTTG CAGGATGTGGAGGAGCTTATCAGTTTACCACCTGACAAGGTTTTACTGAAATGGATGAATTTCCACTTGAAGAAATCTGG ATATCAGAAAGAAGTTACAAACTTCTCTTCCGATGTGAAGGTCAGGGAAATTATAATTATTTTGTACGTTGACTTACTCT AATAGAAGCAATTACTTTTGGGATTTTGCTCCTCTAAAATGAGGGATTAACTTTAGAAGGAACGCATTGATTGAAAATTT AGGTTGTTACAACCTATTAGAGTAGCCAAATCCTCACTTACTCCTGTGTGGATCCTACACCTTGTAACAGAAAAACATTA GGTGCATGCGAATGAAATAACAATATAGCAATCCTTATTTACACCTTTTGGTTTGAGTCTTTTGACCCACTACGGGCTTC ATTCTTGTGCCCTACTTAAATTATAAAATCAGTGAAGAAACAGTGGACCTTCTTTTTTTGTTCTATTGCCCTTTACAGCC ATCTAGACTGTTTAGAAAACAATTAGTTTTCCGTTCTGTAACTTTGCAAGACAAAAACCAATGGAGAATACATTTTCACT GTGTGAGATGAAGTATTTTGTTCGGTTAATGTTAAACGCAACATAACTTCAATACAAACGGGCTCCTCGTAGTTGGAAAA GATTCACTATATTGTCTTGCTCCCTGCTAATTGATGAATTTTTGTTTGGAGCATTTGCTGCTCATAGCAGATGTTTTGAT CAACATTAAGAGATGTAATATGGCTCTAATTTGCACAAGTCGAGTTTATCTGAAATACTTTCTTTTGCAGGATGGCGAGG CTTATGCTTACTTGCTTAATGCTCTTGCTCCAGAAGTTGCAGGTCCATCTTCCTTGGCCATCAGTGATCCCACAGAAAGG GCAAGTATGGTTCTGGAGCAGGCAGAGAAATTAGATTGCAAGAGATACCTCACTCCAAAAGACATAGTGGAGGGGTCTCC TAATCTTAACCTTGCATTTGTTGCTCAAATATTCCAGCATAGGTATGGTTAGTTTTAACAGGTTGCGAATATGCAAATAT TTTCATTGTGAATTGATAAATGATATAGTAAGAAAAATTGAAGTTATGCTTCCAAAAACCCTTTTTTTGTGGGATGCACT CATGCGAGTGGCTCTGATATTTTGATAGGCCTTTGACTATCAGGTTCTTTATATCTTATGAATATATTCGGATTTTTCTT TCTTTTGATTCTTAGCACTAGAGCTTTCCCTTTAGAGGGAAGTGAAGTAACAGATTGTGGAGTGGTCATGTACATCATGG TACTGAATGGATCTCTCTAGTTGATTCATTTTTTGGGAACCAGTATAGAATTAGTGAAAGTCATAAAGTTACAATCTTGT TAGTTCAATTTTTTTAAATACAAATAACTCTGGTACTTATACTTTTGTAGGAATGGCCTTACAGTTGACAGCTCGAAAGT GTCCTTTGCTGAGATGATGACTGATGATGCACAGACATCTCGGGAAGAAAGATGCTTCAGACTCTGGATTAACAGTCTTG GAATTGCTACTTATGTCAATAATGTTTTTGAGGATGTTAGAAATGGGTAAGCTTTCCACTATTCATTCAGTTAGTTCACC ATCTGCTTCTTCCTTATTCTTTTTCACTTCTTTCCTCTACTTGCGTCTTCTTTTAAATATTCTGTTTACCTACTGTTTAT TGTTTTCCTTATTTCTTTTTCCGCAGATGGGTTCTATTAGAAGTTCTTGATAAGGTTTCACCTGGATCTGTCAATTGGAA GCTGGCGACAAAGCCTCCTATAAAGATGCCGTTTCGTAAAGTTGAGAATTGCAACCAAGTTATAAAGATTGGGAAGGACC TAAACTTTTCCTTAGTAAATGTTGCTGGTAATGATATTGTACAAGGGAATAAGAAGCTCTTACTAGGTGAGTTCCAGTTT TTTATTTTATGGCTGGTATTTGACAATACACTGATAGCAGTATAGATATGTTATGATGGATGTCTGGGCTGTTGTGTTGA TAGTCCTGTCAATTTGTCATTATTTTGTTCAGATCTGCTTTTGTATATGTTTGGAATATTCATCTTTGTTTTGCCCCACA GCATTTTTGTGGCAGCTGATGAGATTTACTATGCTTCAACTTCTGAAAAACTTGAGATCACACTCCCAAGGCAAAGAGAT CACTGATGCTGATATATTAAACTGGGCAAACAATAAAGTGAAGAAAGCAGGAAGAACTTCTGAAATGGATAGTTTTAAGG TAATTAAGCAGAAGCTAACCAGTTATGACTTATGAGTATCAATATCTTACCATGCATGTAAATGATCTTTAGGTGGCTCC AAATATTTTTTGAAATTATTAACTGACTATTTTGAACGATGTCTGTGTGTGTTTGAATATACCACTCTTGCTACTCTTAA TCTTACATTCATCCAAAACAATTTTTAGTCTTAGACATTTGTGCTGCTGATTTGGGAGAAATAGTAAATATTTTTATTGT TAAAGCTTTAGAATGAAAAAAGGTGTTTTCTACTTTGCTGAAAAGGACAGTGTACATAATGGTTAGTTTGATGTAAGGAT AATGTAGATAATAGTCACTTTGTTGTTCGGACTAGGACTCAGATTTATGATATTTATTTATTTTATTTCATCAGGATAAG AGTCTTTCCAATGGTATTTTCTTCCTTGAGCTTTTGAGTGCTGTGGAGCCGAGGGTGGTCAATTGGAGTCTTGTTACTAA AGGGGAGACTGGTAAGTCAACTTTTCCACACCATCAAGAAATTGAAGCTAACTGGAATTCAGCTTGCAACTCTAATTTCT TATCATGCAATATATTTAACATTGTTGGGATGTGAAAATATCATCTTGAAAGCAACAATTGAAATCTTCAAGTTAATCTG TTGTGTGAATTGCAGATGAAGATAAGAAGTTGAATTCAACATATATTATCAGCGTTGCCCGAAAACTTGGATGCTCCATA TTCCTGTTACCTGAGGACATAATAGAGGTAAGATTAATTTTAATAGCAACTATACCAGTGTTCTATGAAAATTCAATTTT CATTATTTTGTTCAGTTTGTTGTTAATCTTTTTGTATTTGACCTTAACAGGTCAACCAGAAGATGATTCTCACTTTAACT GCTAGCATCATGTACTGGAGCCTGCAGCATTCTGAGGAAAACAGCACCCCAGAAGCATCACCTGTAGCCTCAGCAGATGG TGAAAATGATACTGATTTAATAAGCAGTGAGGTTTCCAATTTAGCCATTGATGACAATGATTCAGAAAATGCCAGCTCCT AAGTTGGAAATGAAGAAATCTCATTAAAAACAAAGAAGCCTGTTAAACAGTTGATGGAACCACAGAATGTGTTGGGGAAT TCATTTTTGTTTAAGAAACAAAAGCAAGATGCCAACCTCTTGGTGCCTAGTAAATGAGCTTATGGTTTATTATGGAAAAC CACAGTCCACAGATTATAGAAGGATTTTGTAAATTTTTCTTTTTGAATGGTTTTGTACTTAGGCATATTCTTTGGTGAAA ATCGCATGCAATTTTTGCATGGACTTCATCTTAGTGAGTGGTTTATTCTATTTCAGGTCTGGGATTCAAGTATAGAGTTA GTCTTAGTTTCTTACATTGATATTGGGGATGATGGATGATGTATTCCTCCAAGGTGACCCCTAATGTGGACCACTTTTAA AGTGGTCTAATTTTAGACCACTTTTTTTTAACTTGTTATAACAGGTCAACACATCTTTTTTTAAAGAAATTTAATATATG ACAAATTTTTAATGATATTTTTTCTTAAAAAAGATAATGTGTCGACCAGCTATACTTAGTAAAAATAGGTGGTGTAAAAT TACACCACTTAAAAATGGTGCATATTAGGTTCTCCCTTCCTCCAATTGCAAATTTGTTCTGTTTCTTTTCTTAAACAGGT TCTCAATTTTGCTAAAGGAATAGTAAAAATTTTAGTCGTTTGAAACTAAAAGAATATTATATACAATTGGAGTGCTACCA ACACTTAAAAAAACTTCTGTCCAGTGTCCAT
CDS sequence (LotjaGi1g1v0005700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGGTTTCGTGGGTGTCCTTGTTTCTGATCAGTGGCTTCAGAGCCAGTTCACCCAAGTCGAACTGAGAACCCTCAA ATCCAAGTATGTCTCCGAAAGAACTCAATCAGGACGTGTTACTGTCGGAAATTTACCACCTATTTTTAAGAAATTGAAGA CTTTCACTCAAGTTTTCACCGAGGATGAGATTAAAGCTATCTTGGCAGACTCATATCACAACATGGATGAAGAAATTGAC TTTGAATCCTTCCTTAGGGCACATTTAAATTTGCAAACTCGAGCCACAGCCAAAGATGGTGGTTCAAAAAGTACTTCTTC ATTCTTGAAGGCGGCTACAACTACTATTCATCATGCTATTAATGAATCTGAGAAAGCTTCTTATGTTGCGCATATTAATA GCTACTTAGCTGAAGATAAATTCATGAAGCAGTTTCTTCCTATTGATCCTTCGACCGATGCATTGTTTGATCTTGCAAAA GATGGAGTCCTTCTCTGCAAGCTTATTAATGTTGCTGTTCCTGGGACCATTGATGAGCGAGCTATTAACACAAAACGGGT TCTTAATCCTTGGGAGAGGAATGAGAACCACACCCTGGGTCTAAACTCAGCAAAGGCTATCGGGTGCACAGTGGTTAATA TTGGAACACAGGACTTTGTTGAAGGAAGACCACATCTGGTACTTGGTGTGATTTCACAAATAATCAAGATTCAATTGTTA GCTGATCTCAATCTGAAGAAAACTCCTCAACTTGTGGAATTGGTGGAAGATGACAAGGATGTGGAGGAGCTTATCAGTTT ACCACCTGACAAGGTTTTACTGAAATGGATGAATTTCCACTTGAAGAAATCTGGATATCAGAAAGAAGTTACAAACTTCT CTTCCGATGTGAAGGATGGCGAGGCTTATGCTTACTTGCTTAATGCTCTTGCTCCAGAAGTTGCAGGTCCATCTTCCTTG GCCATCAGTGATCCCACAGAAAGGGCAAGTATGGTTCTGGAGCAGGCAGAGAAATTAGATTGCAAGAGATACCTCACTCC AAAAGACATAGTGGAGGGGTCTCCTAATCTTAACCTTGCATTTGTTGCTCAAATATTCCAGCATAGGAATGGCCTTACAG TTGACAGCTCGAAAGTGTCCTTTGCTGAGATGATGACTGATGATGCACAGACATCTCGGGAAGAAAGATGCTTCAGACTC TGGATTAACAGTCTTGGAATTGCTACTTATGTCAATAATGTTTTTGAGGATGTTAGAAATGGATGGGTTCTATTAGAAGT TCTTGATAAGGTTTCACCTGGATCTGTCAATTGGAAGCTGGCGACAAAGCCTCCTATAAAGATGCCGTTTCGTAAAGTTG AGAATTGCAACCAAGTTATAAAGATTGGGAAGGACCTAAACTTTTCCTTAGTAAATGTTGCTGGTAATGATATTGTACAA GGGAATAAGAAGCTCTTACTAGCATTTTTGTGGCAGCTGATGAGATTTACTATGCTTCAACTTCTGAAAAACTTGAGATC ACACTCCCAAGGCAAAGAGATCACTGATGCTGATATATTAAACTGGGCAAACAATAAAGTGAAGAAAGCAGGAAGAACTT CTGAAATGGATAGTTTTAAGGATAAGAGTCTTTCCAATGGTATTTTCTTCCTTGAGCTTTTGAGTGCTGTGGAGCCGAGG GTGGTCAATTGGAGTCTTGTTACTAAAGGGGAGACTGATGAAGATAAGAAGTTGAATTCAACATATATTATCAGCGTTGC CCGAAAACTTGGATGCTCCATATTCCTGTTACCTGAGGACATAATAGAGGTCAACCAGAAGATGATTCTCACTTTAACTG CTAGCATCATGTACTGGAGCCTGCAGCATTCTGAGGAAAACAGCACCCCAGAAGCATCACCTGTAGCCTCAGCAGATGGT GAAAATGATACTGATTTAATAAGCAGTGAGGTTTCCAATTTAGCCATTGATGACAATGATTCAGAAAATGCCAGCTCCTA A
Protein sequence (LotjaGi1g1v0005700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGFVGVLVSDQWLQSQFTQVELRTLKSKYVSERTQSGRVTVGNLPPIFKKLKTFTQVFTEDEIKAILADSYHNMDEEID FESFLRAHLNLQTRATAKDGGSKSTSSFLKAATTTIHHAINESEKASYVAHINSYLAEDKFMKQFLPIDPSTDALFDLAK DGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLGLNSAKAIGCTVVNIGTQDFVEGRPHLVLGVISQIIKIQLL ADLNLKKTPQLVELVEDDKDVEELISLPPDKVLLKWMNFHLKKSGYQKEVTNFSSDVKDGEAYAYLLNALAPEVAGPSSL AISDPTERASMVLEQAEKLDCKRYLTPKDIVEGSPNLNLAFVAQIFQHRNGLTVDSSKVSFAEMMTDDAQTSREERCFRL WINSLGIATYVNNVFEDVRNGWVLLEVLDKVSPGSVNWKLATKPPIKMPFRKVENCNQVIKIGKDLNFSLVNVAGNDIVQ GNKKLLLAFLWQLMRFTMLQLLKNLRSHSQGKEITDADILNWANNKVKKAGRTSEMDSFKDKSLSNGIFFLELLSAVEPR VVNWSLVTKGETDEDKKLNSTYIISVARKLGCSIFLLPEDIIEVNQKMILTLTASIMYWSLQHSEENSTPEASPVASADG ENDTDLISSEVSNLAIDDNDSENASS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 484 | 484 | - | – | |
| PANTHER | 5 | 663 | 659 | 0.0 | ||
| PANTHER | 5 | 663 | 659 | 0.0 | – | |
| SUPERFAMILY | 11 | 95 | 85 | 9.43E-5 | ||
| Gene3D | 118 | 244 | 127 | 1.4E-37 | ||
| SUPERFAMILY | 120 | 618 | 499 | 2.27E-167 | ||
| ProSiteProfiles | 122 | 239 | 118 | 20.256 | ||
| CDD | 123 | 237 | 115 | 1.03344E-18 | ||
| SMART | 124 | 237 | 114 | 3.8E-18 | ||
| Pfam | 145 | 236 | 92 | 5.4E-16 | ||
| Gene3D | 245 | 373 | 129 | 7.8E-39 | ||
| ProSiteProfiles | 267 | 370 | 104 | 22.026 | ||
| CDD | 268 | 368 | 101 | 2.14015E-19 | ||
| Pfam | 269 | 369 | 101 | 3.8E-21 | ||
| SMART | 269 | 368 | 100 | 2.4E-22 | ||
| Gene3D | 388 | 505 | 118 | 6.7E-36 | ||
| ProSiteProfiles | 392 | 498 | 107 | 23.498 | ||
| CDD | 393 | 495 | 103 | 1.57639E-15 | ||
| SMART | 394 | 496 | 103 | 5.7E-27 | ||
| Pfam | 394 | 496 | 103 | 5.6E-18 | ||
| Phobius | 485 | 502 | 18 | - | – | |
| Phobius | 503 | 666 | 164 | - | – | |
| Gene3D | 506 | 618 | 113 | 1.2E-37 | ||
| ProSiteProfiles | 513 | 621 | 109 | 20.075 | ||
| CDD | 514 | 621 | 108 | 1.37081E-12 | ||
| SMART | 515 | 619 | 105 | 3.8E-17 | ||
| Pfam | 516 | 617 | 102 | 7.1E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Actin filament binding | Interacting selectively and non-covalently with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits. | ||
| Biological process | Actin filament bundle assembly | The assembly of actin filament bundles; actin filaments are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness. |
Expression pattern of LotjaGi1g1v0005700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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