Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0005900 |
| Transcript ID | LotjaGi1g1v0005900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fasciclin-like arabinogalactan protein; TAIR: AT2G04780.1 FASCICLIN-like arabinoogalactan 7; Swiss-Prot: sp|Q9SJ81|FLA7_ARATH Fasciclin-like arabinogalactan protein 7; TrEMBL-Plants: tr|I3T7F2|I3T7F2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0005900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:888695..891388) extracted from Lotus japonicus Gifu genome v1.2.
AATATGTAGGGATAGTAGATGATAAATTGGGAAGAAAGAAAGAGATGAAGGAAAAAATGGTGGGGTAGAGTGCAAGGTTG GTCTGTGAATGAACATGATGAGTTAAATAAGTGATTATTATTAGTTGAAGTGGAAATGCCACCATACAATTCAATTCAAT AGAATCAGATCGAGAAACATTGTTTCCATTAAAGTATTATATGTCTTCACGAAAGAACAAATCTAAAGTTAGAAGCATCT CTGTGCTGTAGCCATCAATCCTTCTTCCACTTCCAGCTGGTACCTTTTACCTCCATACCATATTTCATCTTTATATACCC TCTCTCTCACTTTCTCTCCTTCCATTCTCATTCTTCACATTCTCCTCTTCTCTCTCTCTCTCTCTCTGAATTCCTTCTGT TCAGGTTTGTTCTCTTCAACCTCATTCTCATGCATCTCTTTGCTTTCTTGTTTAGCTACTTTTGTTGTGGAATGTGGATG TCACCCCATTATGGTTTTAGTGAAAAGTTGTAGTTGTTCGTTCTTGCTTTTTCACATCTGAATGTCATTTTTGTTTAGAT CAGCTTGTCTAGATCTGAGTCATTTCATTCTGGGGTTGATGTGGAGTGTGTCATTGTGTACTTGACTGGTCTACATTTGA CTTGAGTTTATGGAGAACATGAAAACTTTATAGGGAATGTGAACTAGTAACTGATTCAATTGGCATTGTGAGTGGTGATT TAAAAAAAAAATCAAATTTTTAAACATTCACCACACTGTCTGATCTCGAGTTTAGCATTTTGGAATTTGGGTCTGGTCTT CTGGAACTCTGCAAATTGTTACTATAAATTTATTATCTTTCACTCTCTCTTACTCTTGCTTCAAAGTTAGTACATTTCAA GTGTTCTTTGCTTCCATAAAACTGACAATGTGTTCATATGATGCTCCGATCTGCAATTGCTTCAGCTTACTTTGGTTCAA TTCACATTCCTAGATCTTACATTATGCATTACAAATACTGTTCAATTTTTTCTTCCTCTTTTCTTAGTTCATGTTAACTG TTGTAAGATCTGATTTCAGCCATTTTGTTAGTTGCTGTAGATGTATGTCCATGATTATTTGTAGACAAATCTCCAGTGTA TATGTAAAGAAGGGATAATTATTTGTGTATTTAACTATTACTTGAGATAATTAGCATGTTTGATTTGACTATCAAATGCT CTAGAATCACTATTGATTAGAAGCTACAAGTTTTAGCTTTTGAGTAACTGTGCATTAGGATTCTAAGCAAATCATGAAAC TGAACGTGCGCTGGAGATTATTTCTGCTCTTTTCTTTATCGTTGTGCATTATCAAACTTACTACAACCTATATGGTACCA GCATGTTTGGATCAACTTATTTTTTTCCCCGGAATTAATTATGACGTTTAGAAGCCTTCTTCTCATAATTAATTTTGGAT TTAGAATCAAATGTAAAAGAATTTCTAAACATTTCATACAGTTTGTTGAGATCTAACATTTTGGAGTTAATTTCTTGTAG GAATTTGGAGAGATCACTTGTGATACTGCAAGGTAAGATAAAAAACTTTTGGACAAGGAAGAAAATATGGAGTTTTCCAT GATTTTCATTCTCAGCAACACTCTGCTGCTTCTCAGTTCATCAGCATTTGCCAAAACTGTTAGCCCTCCCTCTCCCCCTC TGAGCCCGACTCCGGCTCCCGCCCCAGCACCGGATTTCGTTAACCTCACTGAGTTACTCGCGGTTGCTGGTCCCTTCCAC ACCTTCCTTGAATACCTCGAGTCCACAAAAGTGATTGACACTTTCCAAAACCAAGCCAACAACACTGAAGAAGGAATCAC CATCTTTGTGCCAAAAGATAGTTCCTTCTCAGCTCTGAAGAAACCTTCCCTGTCCAAACTCACCAGTGACCAGTTAAAGC AAGTGATCCTCTTCCATGCCTTGCCAAAATACTACTCTCTTGCTGACTTCAAAAACCTTAGCCAAACTGGTTCCACTCCC ACATTTGCTGGTGGAAGTTACTCCTTGAATTTCACTGATGATTCTGGAACTGTGCATATCAATTCAGGATGGTCAAAGAC CAAGGTTACTAGTGCTGTTCATTCCACAGATCCTGTTGCAATATATGAGGTTGGTAAGGTTCTCCTTCCTGAGGCCGTTT TTGGCACTGATATTCCTCCAACACCTGCTCCTGCACCAGCTCCTGAAATTGCACCAGCTGCAGATTCTCCAATTGAAAAA AGTGCTGACAGCAAAGCATCTTCTCCATCATCACCTGATGGTTCATCTTCTTACAAGATCCTCAGCTATGGAATCTGGGG CAACCTTGTCCTTGCAACTTTTGGTGTGCTGGCTATGTTGTAATGGGGAATGAATGATCTATTGAATATTTAATTTAGAT TTATGGTGATGTATCTACTACATTTGGTGCTATTTGCTTTGATCTGAATCCATTTTTTCTGAACATAAAGTGTTATTCAA TATATGTATGAGAAAGTGATTTCTATTACACCACTTTTTGTTGTGTTTTTATTTTGAATCTAATACCATGTGATTGTCAA GTTACATTATGCAGCAACAGTTGTATCTCGATCTTCCTTTCTTAATAGTTTTAATTCCGTCACTAGTTCAATCAGAAAGT TGATTTATTTACAAAGATAATTTTGGCTATGTTATGAATAACAAATATAATTGC
CDS sequence (LotjaGi1g1v0005900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTTTCCATGATTTTCATTCTCAGCAACACTCTGCTGCTTCTCAGTTCATCAGCATTTGCCAAAACTGTTAGCCC TCCCTCTCCCCCTCTGAGCCCGACTCCGGCTCCCGCCCCAGCACCGGATTTCGTTAACCTCACTGAGTTACTCGCGGTTG CTGGTCCCTTCCACACCTTCCTTGAATACCTCGAGTCCACAAAAGTGATTGACACTTTCCAAAACCAAGCCAACAACACT GAAGAAGGAATCACCATCTTTGTGCCAAAAGATAGTTCCTTCTCAGCTCTGAAGAAACCTTCCCTGTCCAAACTCACCAG TGACCAGTTAAAGCAAGTGATCCTCTTCCATGCCTTGCCAAAATACTACTCTCTTGCTGACTTCAAAAACCTTAGCCAAA CTGGTTCCACTCCCACATTTGCTGGTGGAAGTTACTCCTTGAATTTCACTGATGATTCTGGAACTGTGCATATCAATTCA GGATGGTCAAAGACCAAGGTTACTAGTGCTGTTCATTCCACAGATCCTGTTGCAATATATGAGGTTGGTAAGGTTCTCCT TCCTGAGGCCGTTTTTGGCACTGATATTCCTCCAACACCTGCTCCTGCACCAGCTCCTGAAATTGCACCAGCTGCAGATT CTCCAATTGAAAAAAGTGCTGACAGCAAAGCATCTTCTCCATCATCACCTGATGGTTCATCTTCTTACAAGATCCTCAGC TATGGAATCTGGGGCAACCTTGTCCTTGCAACTTTTGGTGTGCTGGCTATGTTGTAA
Protein sequence (LotjaGi1g1v0005900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEFSMIFILSNTLLLLSSSAFAKTVSPPSPPLSPTPAPAPAPDFVNLTELLAVAGPFHTFLEYLESTKVIDTFQNQANNT EEGITIFVPKDSSFSALKKPSLSKLTSDQLKQVILFHALPKYYSLADFKNLSQTGSTPTFAGGSYSLNFTDDSGTVHINS GWSKTKVTSAVHSTDPVAIYEVGKVLLPEAVFGTDIPPTPAPAPAPEIAPAADSPIEKSADSKASSPSSPDGSSSYKILS YGIWGNLVLATFGVLAML
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 22 | 22 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 22 | 22 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| PANTHER | 10 | 256 | 247 | 8.4E-116 | – | |
| PANTHER | 10 | 256 | 247 | 8.4E-116 | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 237 | 215 | - | – | |
| SUPERFAMILY | 37 | 189 | 153 | 3.53E-27 | ||
| ProSiteProfiles | 44 | 186 | 143 | 19.701 | ||
| Gene3D | 45 | 190 | 146 | 3.4E-14 | ||
| Pfam | 57 | 188 | 132 | 7.2E-23 | ||
| SMART | 85 | 189 | 105 | 1.8E-23 | ||
| MobiDBLite | 197 | 233 | 37 | - | – | |
| MobiDBLite | 219 | 233 | 15 | - | – | |
| Phobius | 238 | 257 | 20 | - | – | |
| Phobius | 258 | 258 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0005900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…