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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0013600 |
| Transcript ID | LotjaGi1g1v0013600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vesicle transport protein; TAIR: AT4G26550.1 Got1/Sft2-like vescicle transport protein family; Swiss-Prot: sp|P38166|SFT2_YEAST Protein transport protein SFT2; TrEMBL-Plants: tr|V7B2J2|V7B2J2_PHAVU Vesicle transport protein; Found in the gene: LotjaGi1g1v0013600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:1768292..1774538) extracted from Lotus japonicus Gifu genome v1.2.
CCGATAGTCGATGTAAACATTTTTGTTAAGACACGAAGAAGAGAAGAGGGGTTTATTCCGAAATCATCACACACAATACA TAACACAATACATTTTCGGATTTTCCAATTCTCTCGTCTTTGAATTCCAATTCGTCCATTCCACTCTCAGCTTGAAAGGA AGAAGAAGAAGAAGAAAACAGAAATGGTGTGTGTATGGTAGATTCTAGATAGATAGACGGTTGATTGTGATCGAAGAATG GAGGGGTGGTTCTCACGCGTACCCAGTGACGATCAGCAGCAAAAACCAGCCTCCTCTTCTTCTTCTTCGCCCTCTTTGCT GGCTGATTGGAACTCTTACGCTTCATCAACATCGCAGGACACCTCCAATTCCGGAATCGCCTTCGATCTGGAATCTGCTG TCAGATCTGCCAACAACACTGTCACTGGCACTTTCAACGTGTAACCCTCTTACTCCTACTTTCTACATCTCCCTTACCAT CCACCTTAATGCTCCATGATCTTTCTATTATCATTATCAGTGAATGCATATGTATATAGCATATTGTTATAGCGTATTTG GTGTTTGGTTATGCGGTGGAAAGTTCTCTAATCACTCGTAGGAAAAGCCACAAAGTGTGTGTTTGGATTAACTTTATGAG TGTTGATTCTGGATAGAATTGATTTTGTTTAATTGATTATTATAAAAGTAGGTTGAATGTGAAGTAATTTATGTTTTTTT TTTGGTTCATGAAAATGTTTGAATACCTTTATGGATAAACCACTTAGTGGGCAAGAGCTAAAAGAGCTTTAGTGTAAACT TATTTTCATTTAAAATGATATAAAATAAATTAAATACTTGGGTGGTTAAAGTTTGAATCATTCAGGTTTTTCTCTCCCCA AGTTGAACCACTCTTTTCTCCTGTTTTTGATGGCGAGTCCGTTGGAATCCCACGATTTCATCGGAAACGAGAACGGGCTT TCAACGACACATCCCATCGGAGCTAACAACGTAAGAGATAATGGAAACCACAATACCGATGGCAGTGAAGGGAACAAGTG CAATAACCACAATACCGACAAATGAAGCTAACGTTGGGTTGTTGCACTCGTTCCCTTCACTGCCATCGGTATTGTGGCGT TTGTTACCCGCCTCTTTGTTTCCATTATCATTTATGTTGTTAGTTCTGATGGGATGTGTCGTTGGAAGCCCGTTCTCGTT TCTAATGGAATCGTGGGAGCTCTTGCCCACTAGGTGGTTTATTTAGTTGTTGAAGTTGGAATTAACACGGTGTTAATGCT GAGTCAATGGTTTATTTAGCTCTTAAATAAAATACCTATTCAATGGGTCTGTTAGTTTAGTTTTCAAATTAATATCACAG GTAGGATTTCTTGTTAGTTGCTGTTATCTTTTCTTTTTCTCTTACCAGATGTAAGGGCCATGATATTTCAATAATGAAGA CTTTTCCTTGGTTCAACTCCCCTCTCTATATCACGTGTTCTTTCTTGAAATATGGTATCAAGGGTTTAGCATTTTTTTTA CAGTATGTTGTAAGTCATACTTGCAAGTATGGCTTCAGATAATTCATATATAGAGCCAGCTGTTCCTAAGTTCAATGGGT TTTATGATCATTGGGCAATGCTCATGGAAAATTTCCTCCGATCGAAAGAGTCTATGGGCCAGGCACATACGTTATTTTTT GACAGCAAAATCAGAAGCCCTAGGTGCTTTCAGAAGTTTCCAAATTCATGTTGAGAAAGAGACTAGTCATGCTATCAAAG GCCTACGTACAGATCGAGGAGGGGAGTTCACTTCCAACGAATTCATGCAACATTGTGCAGACCTTGGTATCCAGCACCAG TTGACAGCCACATATTCTCGACAACAGAATGGCATTGCCGAAAGAAAGAATTGAACTATAATGAATCTTACTTGAAGCAT GCTGTGAGAAATAATTTGGACTGTGCAGTAAATTGGACTGTGCATATTTTAAATCACAGTCCTACTCTTGCTGTGAGAAA TAAAACACCAGAAGAAGCTTGGAGTGGTGTCAAACCTTCAGTTGGGTATTTTTGTGTTTTTGGTTGCATTGGTAATGTTC ATGTTCCTGATGCTAAGCGAACCAAGCTCGATAACAAGAGTCTTCCTTGTGTTTTGCTTGGCGTCAGTGACGTATCCAAA GCATACCGATTGTATGATCCAGCCTCCTAACGAATTATCATTAGCAGGGATGTGGTCTTTGAAGAAGATAAGGCTTGGAA TTGACACACTAACTCTGAACCATTAACTACCTTTGAATTGGAGTGGTAAGCAGAAGGGGGTGATGGCACTAACAGTTCTG AATCTCTTGAGCCTACAATTGCTGATCAATCTCCTCAACTTGCTGATAGTGGTCAACCTGAGCGTGTCATATCAGCTCCA GTGGAAACATCAACTGGATACCCATCGCGGGATCACCGCCAACCATCTTGGATGGATGACTTTGTTACCGGTGAAGGTCT TTCTGATGATGAACTTGCAGATTCCTTCTCTAACTTAGCCTTGTTTACATGTGATGGTGATCCCACTTGTTTTGAGGAGG CTGTTAAAAGTGTCAAATGGCAGCAGGCAATGGACACAGAAATTGAATCCATAAAAAGGAATGACACATGGAAATTAGTG GACTTGCCTAGTGGTGGAAAAATTGTTGGTCTCAAGTGGATTTACAAGACCAAGTACAATGAAGTTGGTCAAGTTGACAT ATACAAGGCCCGTTTAGTCGCCAAAGGGTATACACTGCAACATGGCATTGACTATAACAAAGTGTTCACTCCTGTAGCAC GAATGGAAACTATCCGTCTAATTGTTGCATCAGCTGCACATATCCACAGGGCTGTTCAATAGGCTAATGTTATGAAATAC ATTAATGAAATTCCACAATTGATTATGTTCATGGCAGAAGTTGCTCTTTTTAGCTTCTCGTAAATTTGATTTTGGGACTA TAATCGATTATCTATGTTGATTGCCAACATCTATATGACCACCTAAAATTTGGTCAATGAGAATTGATTATTAGGCTCCC GAACCTGGAACCAAACACACTTAGAATATCGTGATTGGTTACATAAGGCTGTTTTGTCTGTCCTAATTACCCAGCAACGC TTCCTTAATCTGACTTGGTTTGATTGAATTTGAAAGTGAAATGAATGATGGTTTACATGGAAATGAGGTTTAATTGGAGT ATGATGGAATAGAATAAAATCTGTAATCTTTGTTATACTTACATACATGGCATGCAAAATATAGTATCAAGCTTCTGATG TGATTATGTGGAAAGAGTTTCCGATATTTTCTGAATGTGCTGTGGCAGAGAAGTCATTGTTATTCTTCTTTAGCCTTTTC TTTTTTAAATTCTTGATGGTACAAATTACTGCCACAATTTCTTTGTTGAATGTATGATCTACATCATGGTAAAAGATCAT GTTCGAAAGATGAAACTACTAAGCCTATGTTTGGATATCTGTTGGCATTAGTGCAAACGGACAGTAGCTCACACTTCAAG ATAAAAAGTGAACGAAACTCTTGGATTGAGATTAAAGTCTGTTCATGTTGCACACAACTGGTATCCAAACACCCTTAGGC TCTATTTGTATCTCCGTTGGGTTTAACAGAATGTTAATGGAGCTTTGAAGCTCTTTTGATGTTTTTTGCTTGGACCAAAG CAAATTAGAAGTACTTTTAATGCAAGCCAAATATACACTAATTAGTTTTCCTTGAACTTGTGTCCTCGAGTAGTTAAGCA ATTTGCTTCTTAAAATTGTTAGGGTTTCTAAAGGTGTGAGAGATATTCCTGGCAACTTCCAGTCTGCCACAAGTAGTCTT CCTTCTGGGAAAGCACTCGTGTATTTTGCTTTGCTCCTGGCAAGTGGAGTCTTCTTCATTTTCATTGCATTTACCTTGTT CCTGCCCGTGATAGTGGTTCTGCCCCAGAAGTTTGCTATATGCTTCACTCTCGGGTGTGGATTTATTATTGGGTCATTCT TTGCTCTCAAAGGTCCTAAGAATCAGCTTGCTCACATGATGTCAGCGGAGGTAAGTTACTAGAATTTCATCATTTCCTAT CCTGTTGTTTTCAAGGGGATAAAAATGGCTTGCCATTGTATGTTGCATGAGTTTTATGCTTTCTTCTGACTCTCTCTCCC TTTATGATTATTTTTCAGAGGCTCCCTTTCACAGTGGGTTTTATATGCAGTATGATTGGTACCATATATGTATCTATGGT GCGTCACAGCTACATTCTCTCTGTTCTGTTCTCTGTCGTACAGGTATCAGCTTCATCTATCCTTAAATAGTTAAAATGTT TCTTTAATGCTTTGCCCTTCCCCTTGTGTTATTGTTAGCATTTTCTATGGGCGTGAAATATGTACGATGGGTTTTGTGTA AAATCTTGAATTTATTGTTGCAATAGTTCCTTCTATATAGGCAGAAACTTAATAGATTTAGAGAATTTTAATATCCACAT TTTTAGTGGCTAGATTTATATGATGATGGGTGTTAACTCCATAACTTGGTGCCAGCACCTGGGGATGTGGAAATAGTTAT TTCTTTCAGAATTTTGCATACATAATTTCTTCTTTTTCTTTCTAAAACCATCAATCTTGTATTGAAATGATATATTTCTG ATTCTACTTGCAGGTTCTCTCACTTGGATACTATTCTATATCATATTTTCCTGGTGGATCTGCTGGAATGAGATTTCTGA CTTCTTCCATAACATCCAGAATAATGAATTGTTTTGGGAGGTGATTTGTGAGTTTTGATTATAGTACACCCCATTTTTTT TCTCTCTATTTTCCTCTTCCTTTTTCCATCACAGTTCCCCCCTCTATTTTCTTAATTTCTCTGGTGATTTGGGGTGTACC ACCCCATGAGTGTACAAGTATATTCATCCTTGGTTAATTGGAGATGAGGCATATTGCTGAGTTGAAGCATCATCTAACAC TTGCTAAGATTCAATGTTTGTTGCCACCTCTTAATGAGAAAATCTATTAACCTCTTTGCCACAGGTTCTGATCTTTATTG CACACGGGTTTAAGTTGTAAGTACCACCGTACCAGTATTGATACGGGTTGGAGGATTTGACAAAATTCGTAAAAGCTGAG ACGCAAATGCAGGTGGATCAGGATATACCATATAAAAACATTAGTATTAAAATCATAATATAAATATAGTTTTTACTATG TTTTAACAGGAGAAAAAGAAGTGAAATTGGAATTTGCTTAACTTAGTAACGAACCAAACAAATTAGCAGCGTAATTTTTA TTATGCACGGATTAGTTGTAACTCAAGTGATAGGTGAGCGTTGGATAGGTAATTGTCTAGCCAAGAAGCACTTGTACTCT ATAAGTACACTAAAAACATTTAGAAGTACCTGTGTTCTTTGATTGCAAACTAACATTATGTCATTATCTGATTGATGAGC TGCAGAAGACTGTTACTTTCTTCATGTTCCCTCCCCCAAAATGGAATATGGAATAGGTTTTTCTTGGATGAGATTTTCAT TAAGGCCCTTTTTATCATTAATTTTTGTACGATTATTATTTTTGTTAAAGAAATTGTCACTCAACAAACTATAGGATAAA ACAACAAAGGAAGATGGACAAAGGAGGGGGATGAAGATGGTGTTGGAGGAGTAGGGGCCGCAAGAGGTTAAGGACAGAAG CAGAGTCATGAGGCAGGGGAGATGAAGGTGGTGGTGACCGGGAAAAAAAGAAAGTGAGAGAAACAGAGGGAAAAATGTCA AAACAAAGGGTGTGACCGTGGAGAGCTGTTCGTATGATATGTTCACACCTCTGTAGTTAAAAGTTAAATCATTTGTATGA TATGTTCAGTATTTCTGCTGGTTGAAACAATCAATCATCACAAGGAATCGTGGCACATGGTTGAATTGGTTACTGGGAAA TGAAAAACTTAGCTGTTTAAAGGACAGAAGTGTGGTTTCAAGTAGATTCTAGTAGACACTGGCTCTTGCTTCAGGGGTTT ACTTGAAATATCTCAGTTATAGTATGATACGAACTTCATAATGAGGTCATTACTAATTCATTAATAATTTAGTTGAATAT GTGTTCTTAATTAATAGGTTAACTGTTTAAGAGTAATCTTGATGAATTTACTTAGTAAATTACCATTTGGACGCAGGACT AATCTTCATGAGTTTGACTAGGGGTGTTGGAGGCATGAGCTATGTATGACAAGCTTTATTTGTTCCTCACTTGGTTCTAA GTTTTGA
CDS sequence (LotjaGi1g1v0013600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGGGTGGTTCTCACGCGTACCCAGTGACGATCAGCAGCAAAAACCAGCCTCCTCTTCTTCTTCTTCGCCCTCTTT GCTGGCTGATTGGAACTCTTACGCTTCATCAACATCGCAGGACACCTCCAATTCCGGAATCGCCTTCGATCTGGAATCTG CTGTCAGATCTGCCAACAACACTGTCACTGGCACTTTCAACGTGGTTTCTAAAGGTGTGAGAGATATTCCTGGCAACTTC CAGTCTGCCACAAGTAGTCTTCCTTCTGGGAAAGCACTCGTGTATTTTGCTTTGCTCCTGGCAAGTGGAGTCTTCTTCAT TTTCATTGCATTTACCTTGTTCCTGCCCGTGATAGTGGTTCTGCCCCAGAAGTTTGCTATATGCTTCACTCTCGGGTGTG GATTTATTATTGGGTCATTCTTTGCTCTCAAAGGTCCTAAGAATCAGCTTGCTCACATGATGTCAGCGGAGAGGCTCCCT TTCACAGTGGGTTTTATATGCAGTATGATTGGTACCATATATGTATCTATGGTGCGTCACAGCTACATTCTCTCTGTTCT GTTCTCTGTCGTACAGGTTCTCTCACTTGGATACTATTCTATATCATATTTTCCTGGTGGATCTGCTGGAATGAGATTTC TGACTTCTTCCATAACATCCAGAATAATGAATTGTTTTGGGAGGTGA
Protein sequence (LotjaGi1g1v0013600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGWFSRVPSDDQQQKPASSSSSSPSLLADWNSYASSTSQDTSNSGIAFDLESAVRSANNTVTGTFNVVSKGVRDIPGNF QSATSSLPSGKALVYFALLLASGVFFIFIAFTLFLPVIVVLPQKFAICFTLGCGFIIGSFFALKGPKNQLAHMMSAERLP FTVGFICSMIGTIYVSMVRHSYILSVLFSVVQVLSLGYYSISYFPGGSAGMRFLTSSITSRIMNCFGR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 228 | 228 | 1.4E-111 | ||
| Phobius | 1 | 91 | 91 | - | – | |
| MobiDBLite | 1 | 27 | 27 | - | – | |
| PANTHER | 1 | 228 | 228 | 1.4E-111 | – | |
| MobiDBLite | 8 | 27 | 20 | - | – | |
| Phobius | 92 | 118 | 27 | - | – | |
| TMHMM | 96 | 118 | 23 | - | – | |
| Pfam | 103 | 215 | 113 | 1.1E-27 | ||
| Phobius | 119 | 123 | 5 | - | – | |
| Phobius | 124 | 143 | 20 | - | – | |
| TMHMM | 125 | 143 | 19 | - | – | |
| Phobius | 144 | 154 | 11 | - | – | |
| Phobius | 155 | 176 | 22 | - | – | |
| TMHMM | 158 | 175 | 18 | - | – | |
| Phobius | 177 | 181 | 5 | - | – | |
| TMHMM | 182 | 204 | 23 | - | – | |
| Phobius | 182 | 204 | 23 | - | – | |
| Phobius | 205 | 228 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi1g1v0013600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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