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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0014900 |
| Transcript ID | LotjaGi1g1v0014900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ER membrane protein complex subunit 8; TAIR: AT5G55940.1 Uncharacterized protein family (UPF0172); Swiss-Prot: sp|Q9FG71|EMC89_ARATH ER membrane protein complex subunit 8/9 homolog; TrEMBL-Plants: tr|I3S6K8|I3S6K8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0014900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:1943131..1947042) extracted from Lotus japonicus Gifu genome v1.2.
AGACGAGCCTAATTGGGCTCAAAGCCCAAGAAACAACATTGCAAACATTCCTTTATCGCCGACGCCTAGGATTGCAACTA TACGACGTCGTTACCATTGTTGTCATCACACTCTACATCAACACACACACCAACAGCGAAGTCCACAACAGTTTGTGTTG TGAATCTGAAACATGGGAAGCGTCGATTTGAGGTACGAGGTTGCACAAAACGCATACATCAAACTCGTCCTTCACTCCCT CAAACACCCCTCCTCCGCCGTCAACGGCATCTTGATCGGCCGCGTCTCCCCTTCCAACGACACCGTCGAGATCACCGATG CCGTTCCTCTCTTCCACTCTCACATCCCTCTTCTCCCTCAATTGGAGATCTCCCTCATTCTGGTCACCCCTCTCTCTCTC TCTCTTCTAGGGTTTTATGCTTTTTTTTTCACACTTTCTCATTCAGTTTTGACCCCAAATTGTTATTTGTGAAATTATGC ATAAACTCATATGCTTTCTTAAATAACATGTTGTTTAATCATCTGGGTATTTCTTTTCTTCTTCTGGGTATCTGTTAATT ACTGCTTACTTTGGAATTTGGGTTCTCCTTAGTTTATCATTGTAATTTATGCATAAACACGTAAACTTTGTTAATTAACT TGCAATTTAAGCAACTGGATGGGTAGTTTACTTTGGATTTTCGTTAGCTGATTATCCAAACATTATGCATAGACACATAT GCTTTCTTAAGTAACATGAAATTTAATCAATTTCTGTTTGGGTATCAGTTGATGATTGTTTACTTTGGATTCAACTTAAT TGACAATTGTAAAATTATGCTAGACACATATAACAGCAATTTAATCAATTTATGTTGGGTATCAATTGATTATAGTTTAA TTTCAATTTTCCGTAGTTGATTATTGTAAAACTATGCATGAAGGCTTATGCTTTCATAAATGACATGTAATTTGATCAAC CTGGTTCAATTTTTTTTTCCCATGTTGGGTAAAATTTGATTATTGTTTACTTTGGAATCTCTTCAGTTTTCTGATTTTTG TGATCATAACTGTTTGTGGGACAGATAGAGGAATATTTTTCCGCTAAAGGGTTGAACATAGTTGGGTATTTTCACGCGAA TGAGAGGTCTGATGATCACGAGCTCGGTGGTGTGGCAAAGAATATTGGTGACCACATCTGCCGCTACTTCCCCCAAGCTG CTATCCTCTTGGTACGTGTTGGAACTTTTGCTAATCTTTTTCTTATGAATTGTGTCATTCTGCTTACCACCTATTTGTTC CCTTTACAATTCTTCGCAGTTAGATAATAAGAAACTTGAAGGTTTGAAAAAGAGCAAGGAACGCGGTGCTGTGATGCAGG TTAGCAATATTAGAATGGGAAACCGCATTCATCAACTGCTTTAATAATTGGTTATACGAAAACTGTGTTTACCAACTCTA TGAATGTTATTTGGATTTCTCTTGATAACACGTTTGATCAAATCATCCAATATAGAGAAAATAGAAATTTGCAAGGGCCT TTATATGAGTGGAATGAAATCAATGGAAACATGAAAACCTTTGTAGTCATTACAATAAGTGTATCTTCTGTAGTCTCCTT TCCCATCCGACTATGAGCAGTTTGCTTATATATTTTGGTTTCCCCATCTTAGTTTTAGAGCTTATTTTGGTGCCTTATTC TCTAAACCTGGATAAAATTTCTGTATGGCTTAACTCGATATTAGGGAGTAGCATCTTGAATGTATAGTAGCAGTAAAATC CTGGACTTCAATCTGATGATGGCAACAATTTAAAATCACAAGGCTTGAATATTTTGCTTAATCCCTCTTCCTGTCTCCAG CAAAAGTTAAAAGATTCCTTGTTTTATTTGCCACATGTTTGCAGCATATCATATCAATCTATCTGATTTGAAGTGAGACA ATAAAATGACTGTGGTGTGTGATTGACATGTTATGCTGAATTATAAAGGCTGCAACCACGGGCCAGTATAAGAATTCATC TAAATTTGTACTAATCACAAAGATTTCATGCCTTTTGTTTGTTACTTGTTTTCAGTTTTATGGTGTGTCCAGCATACACT TTCTTGTTGATAAATGAAAAACAAAAACACTAACTTAACGTTTATAAACTTGGTTGTGAGTGCTTATGCTATTATATATG GTTTCCCCATATGATCTAGAGTGATCTTTTTGCCGGTTACATTAACACCGATTGCCTTTTTCTTATGATTTAGCTTTATC TTAGGGATGCATCTAAGAACTGGAAGTTGGCTCAGCCAGATGGGAACAGTCGTTTCTCTCTCAAAGAGCCATCAGCAAAT CTGGTCTTATCAGACTATATTTCATCTGAGAAATGGAACAACATTGTAGATTTTGATGACCACCTCGATGACATAAGCAA GTAAGTGCTTTTGCCCAACAACATTTCGTGCGTGTTTGGTTTCACCTTTGTGAGCCATAGAATCAATTCTCATTTACCAG AATCACTTTAGGTGGTTGTATAGATGTTTGACAATTGACTTAGAGAATTGATTTTAGTGACAAAATCAATTATGTAGAGA AGCTAGAGAGAGTAGCTTCTGCGGTAGTCATAAACATAATCAAAATTATGAGATTTCGTAACTGAATTTCACAACATTAC TTTATAGAAATCACTTTTTCCCACATAACCATACCCAAACATATATCATTTAACTTTCAAGTCACTTTTACCAAAATCAA TTTTGAGAATGCTGATTGAAATACATACTTATTTCGCTAGATTTTCTTATATGCTCTTATAATTGACTCTACATGATCTG TATTCTATTTTGTTTTCAGGGACTGGCTAAACCCAGGGCTCTTTAACTGATGCCAGCACTTGGGAGTTCCATCTTTACCG AATTTACTTTGCAAGTGGATGATCCTCAGGCATAAGATGATAATACATATGCCAGATTCTCGATGATGAAGAATTAGGGA ACAGATTTTGACATGGGAATGCTGTTTCATGATAAACTTTTTCAGATGTATAAGCAGGATATTTAACAGCTGCTTAACAA TCTTCACTCGCCTTCCGCCTGCAAGGGTTTTGGTCGGAGAGCCTTTGTATTTTTAGGATGTACGTATACTACATTGGAGT TTGTTGGTTTTGCTTGTGACCAATTGTCATATCCTCCATTATTTCAGTTGAATCCCATAAATTGCCTAGATTTATCGGTC AAGATTCATTTGATTAATGTCACGCTACCCGACAAATGACATTTACATCAAGGGGAAAACTTATATACAGTACCAAATAT GCTGTTGGTGCTGTTTTCCAACTAAAAAATGACATGTGGCACCCATTAATTTTTTAAATTGACTCTTTTATTCTGCTACC TCCACTACCCCTCTCCTTAACTTGTGATGAGTTTTCCTCCATTTTTAAAGACATCAGAAACAACATCTCTACACAAGCCT TGAAACATGACCCTGGAGAAAGAATCTTGGAAATCAACAGGTCAATTTTCTAAATCCCACCCACAAGAGCTTTTGAAATG AAGAAATTGCAATAAAGCAAGTTAATTTTATAAAATTGGCTCTGCTGAATCTGTACACATCATGGTCTGAGAGTACTACC CATGTCAACATGAAGCACTTGCTTTTCCTGCACCGAAATTGGTTATGTTGATTCTGTATCCAACATCAAAATTACGGACT CGTCGTACCCCTTTCATGGTCGTCCACGTTGCAGTGTCTCGTCGTACCCCTTTCATGGTCGTCCACGTTGCGGTGTCGAG GTTGAAAATTCAATTTTGAGATTGGCAGAAGGAAGGGTGTTGGAGTTTGGACATGTAGGGTGTATGCCATGGAAGGAATT TGGAGATCAGAGGTTGGAGATGAGAGATTGGGGGAATAAGAAACGTGTTAGATTTTTTTTGAGATATAAAGT
CDS sequence (LotjaGi1g1v0014900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGCGTCGATTTGAGGTACGAGGTTGCACAAAACGCATACATCAAACTCGTCCTTCACTCCCTCAAACACCCCTC CTCCGCCGTCAACGGCATCTTGATCGGCCGCGTCTCCCCTTCCAACGACACCGTCGAGATCACCGATGCCGTTCCTCTCT TCCACTCTCACATCCCTCTTCTCCCTCAATTGGAGATCTCCCTCATTCTGATAGAGGAATATTTTTCCGCTAAAGGGTTG AACATAGTTGGGTATTTTCACGCGAATGAGAGGTCTGATGATCACGAGCTCGGTGGTGTGGCAAAGAATATTGGTGACCA CATCTGCCGCTACTTCCCCCAAGCTGCTATCCTCTTGTTAGATAATAAGAAACTTGAAGGTTTGAAAAAGAGCAAGGAAC GCGGTGCTGTGATGCAGCTTTATCTTAGGGATGCATCTAAGAACTGGAAGTTGGCTCAGCCAGATGGGAACAGTCGTTTC TCTCTCAAAGAGCCATCAGCAAATCTGGTCTTATCAGACTATATTTCATCTGAGAAATGGAACAACATTGTAGATTTTGA TGACCACCTCGATGACATAAGCAAGGACTGGCTAAACCCAGGGCTCTTTAACTGA
Protein sequence (LotjaGi1g1v0014900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSVDLRYEVAQNAYIKLVLHSLKHPSSAVNGILIGRVSPSNDTVEITDAVPLFHSHIPLLPQLEISLILIEEYFSAKGL NIVGYFHANERSDDHELGGVAKNIGDHICRYFPQAAILLLDNKKLEGLKKSKERGAVMQLYLRDASKNWKLAQPDGNSRF SLKEPSANLVLSDYISSEKWNNIVDFDDHLDDISKDWLNPGLFN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 204 | 201 | 1.4E-92 | – | |
| PANTHER | 4 | 204 | 201 | 1.4E-92 | ||
| Pfam | 8 | 202 | 195 | 5.7E-61 | ||
| ProSiteProfiles | 8 | 142 | 135 | 17.122 | ||
| Gene3D | 9 | 95 | 87 | 2.6E-5 | – | |
| CDD | 10 | 199 | 190 | 2.29768E-77 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | ER membrane protein complex | A transmembrane protein complex located in the ER that is involved in ER-mitochondrial membrane tethering, which is required to facilitate lipid transfer from the ER to the mitochondrial membrane. In S. cerevisiae, it has six members: EMC1, EMC2, AIM27, EMC4, KRE27, and EMC6. |
Expression pattern of LotjaGi1g1v0014900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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