Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0015100 |
| Transcript ID | LotjaGi1g1v0015100.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal RNA small subunit methyltransferase B; TAIR: AT3G13180.1 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein; Swiss-Prot: sp|Q8EKR0|RSMB_SHEON Ribosomal RNA small subunit methyltransferase B; TrEMBL-Plants: tr|V7B964|V7B964_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0015100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:1950665..1953024) extracted from Lotus japonicus Gifu genome v1.2.
TGGAGCTTCTTTCAAACCACCAACCATTGTTTTCTTTTTGACTCTGCAATGTTCTAACTTACTGATATGTTGATATACTA GCTTCTTGTTTAGTTACTTCATCACCCCACCAAATTGAATGTTAACAGAAAAATTAGCTTGTGTTTTCAGGTATGATATA TGCTGTTGATGTAAATAGTGGCAGGTTGAGAATTCTTAAAGAGACAGCAAAGTTGCACCAAGTAGATGGTGTCGTTACCA CCGTACATGCTGATCTCCGTACATTAACTGTGCGTTATATCATTTTGATGCTATATTGAACTCAGTTGTAGTTTATTTCT TATTGGTTTCCCTTTGTGTTTCCCAGGAGGATAGCGGACCACTCAAAAGTAACAAAGTTTTGTTGGACGCTCCGTGCTCT GGACTTGGTGTTCTTTCAAAGGTGGTTATCTCAAATAAGTAATGTTTGCTCATTGTCATTGTTTTCGCATAATTATTCAA TGCATTTCCATTTTCTTGTTTGTTTAATCTGTTTTTATTCCTGGGCTTTTAAAGAGAGCAGACCTACGTTGGAACAGGAA GCTGGAGGATATGGAACAACTGAAGAAATTACAAGATGAGCTCCTGGATGCTGCATCCAAGTAAAGCCATAAACTCTCTT TGGTTTTCCCGAATTTTTTTGATGTTATAATCAAACATGTGATTTCTTATATTGAACTATAATCACGGATCTTCTTCGAA GATATTTGAAAATTTTTAGTAGTTCTGGGAATGATGAGAAAGTTCACACCTAAATTAGAAACCAGTTCCAACTATGCTTT GTTCATCATGAAAAACCGTTTAGTTATGAAGATCAGTTGATGAAGTGTCAATATTTTTAGCTCAGTGAATACATTACATG AAGTGGATCAAGGCTTGTTGTATGCTTAGATAATAACTTGAGTATCCAAACTTTGAAAGCGAATTTTACACAAGTAGCTA AAACTTATCTATGATGTACTGTTTCTCCCTCATGGAATTTTTTGTTCCTACAAATGTAGATTGGTAAACCCTGGGGGTGT GTTAGTTTACAGTACATGCTCCATAGATCCTGAAGAGAATGACGAGAGGATAGCAGCATTTCTTGTAAGACATCCAGTAA GTATTGTCACTGTTTGCTTACTAATCTTCTTCAAATATTTTAATTTTTGGTTTAAGATATGCTTTCCTTTTACAATACTT TAACTTCAGTTTGGATATTTATTGGGAGGTTACATCTTGTTATCCATGTTAATGAGACATGACTTGTATGCCAGCTGTTC AAGTGCCAAATCCTCTCCAGCTGGGTGATGGGCTTCTTTAGAAAAATTAGATACTATGTTATTCAGGGAAATTGTTGACT AGCTGTGAAGGTTACTTGGAAGTTCAATTTAAGGCTGGGTTTGGAAAAATTCAATTAAATTTTTCTTATAACATACAGTT ATGTAACTGTTTGGGTAAGCTTATGACCTACCTATAGGCTGTTTTCAGCTTATTTTCATAAACTGCTCAAATTGGCTTAT GAATAAGTGTTTATAGTTTATACCTTCTTACCTAAAAACTATTTTGAGCTTATTCCAATAAGCTTCTCAAATAAGTTTGT GAATGAGTGCTTATGTGATAAACGCTTAATTAAGCTTCTTAGAATAACATGTGTTGAGACTAACTCTAACCCAAAAGCTA GCAGTTAGAGGTGAGGGTTGCACTACCCTATATAAAGACTTATTTGGTCATATCTCTAGTCAATGTGAATTTCTCAACAC ATCTACTCACGCCCAGGGCTGGACATCTATAGCGTGGAATTTGCAAGAATAGCCATTTGCGGGTGACCCATATACGGGTT GTCTCCAATTAACAGATGTAGGATAGACTCTGATACCATATTAGAATTTGGGTTAGGCCTAACTCTACCTCAAAAGCTAG CTTAGAGATGAGGGTTACACTACCCTATATAAAGGCTTATTTGGCCAAATCTCCAGTCAATGTGAGACTTCTCAACGAAG TTGTTACCCAAAAGCACCCTAAATATGGAAAATCAAATGCTTTGTGTGTCAATGATTAGGTGTCGTTAAACTTCTTAGAG CATGTATGATTATTCTCATATGATATTCTTTCCTGAACAACACTATGGGTTTGTGAAGAGCAGCATGCATATCATTCTCT GTAGAGTTCAATACTCTGATGTCTAATCTCATTTTTCAAGTGCTAATTTATCTTTCTCTGAATTTCAGGATTTTCATATT GACCCTGTAGACAGATATGTTCCACCTGATTTTGTGACACACAGTGGTTTCTATTTCTCCAACCCAGTAAAACATTCACT GGATGGCTCATTTGCAGCACGTTTGGTACGAGATTCATAA
CDS sequence (LotjaGi1g1v0015100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATATATGCTGTTGATGTAAATAGTGGCAGGTTGAGAATTCTTAAAGAGACAGCAAAGTTGCACCAAGTAGATGGTGT CGTTACCACCGTACATGCTGATCTCCGTACATTAACTGAGGATAGCGGACCACTCAAAAGTAACAAAGTTTTGTTGGACG CTCCGTGCTCTGGACTTGGTGTTCTTTCAAAGAGAGCAGACCTACGTTGGAACAGGAAGCTGGAGGATATGGAACAACTG AAGAAATTACAAGATGAGCTCCTGGATGCTGCATCCAAATTGGTAAACCCTGGGGGTGTGTTAGTTTACAGTACATGCTC CATAGATCCTGAAGAGAATGACGAGAGGATAGCAGCATTTCTTGTAAGACATCCAGATTTTCATATTGACCCTGTAGACA GATATGTTCCACCTGATTTTGTGACACACAGTGGTTTCTATTTCTCCAACCCAGTAAAACATTCACTGGATGGCTCATTT GCAGCACGTTTGGTACGAGATTCATAA
Protein sequence (LotjaGi1g1v0015100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIYAVDVNSGRLRILKETAKLHQVDGVVTTVHADLRTLTEDSGPLKSNKVLLDAPCSGLGVLSKRADLRWNRKLEDMEQL KKLQDELLDAASKLVNPGGVLVYSTCSIDPEENDERIAAFLVRHPDFHIDPVDRYVPPDFVTHSGFYFSNPVKHSLDGSF AARLVRDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 168 | 168 | 8.9E-42 | – | |
| PANTHER | 1 | 167 | 167 | 7.1E-94 | – | |
| PANTHER | 1 | 167 | 167 | 7.1E-94 | – | |
| ProSiteProfiles | 1 | 167 | 167 | 39.811 | ||
| Pfam | 2 | 164 | 163 | 1.7E-37 | ||
| SUPERFAMILY | 2 | 166 | 165 | 3.81E-36 | ||
| PRINTS | 48 | 60 | 13 | 1.9E-14 | ||
| PRINTS | 98 | 114 | 17 | 1.9E-14 | ||
| PRINTS | 149 | 166 | 18 | 1.9E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. |
Expression pattern of LotjaGi1g1v0015100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…