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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0016300 |
| Transcript ID | LotjaGi1g1v0016300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar iron transporter-like protein; TAIR: AT2G01770.1 vacuolar iron transporter 1; Swiss-Prot: sp|Q9ZUA5|VIT1_ARATH Vacuolar iron transporter 1; TrEMBL-Plants: tr|V7CT43|V7CT43_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0016300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2088246..2090776) extracted from Lotus japonicus Gifu genome v1.2.
CCTCTGACTCAGACTCAGACTCAGACTCAGACTCAGACTAGGCTCTATTTGGATAGCGAGATCCTTTTCACACTCAAAAA TGGGTTCCGCCGAACAGAGAATAAGCCTCATCGAACCTGACACTACTACTCAGGGTCTTCTCAACAACCACACCGAGAAG CATTTCACCGCCGGCGATATCGTCCGCGACATCATCATCGGCGTCTCCGACGGCCTCACCGTCCCCTTCGCCCTCGCCGC TGGACTCTCCGGCGCCAATGCCACCTCCTCCATCGTCCTCACCGCCGGCATCGCAGAAGTCGCCGCCGGCGCCATCTCCA TGGGTCTCGGCGGGTAACAAACCATTCAAATTTCTCAATTCAATTCTTCTCCTCTTCTCCTTATTATTATTAATATTTAT TTAAAAAAATTCAGGTATTTGGCGGCAAAAAGTGAAGCTGATCATTACGACAGAGAATTGAGAAGGGAGCAAGAAGAAAT CATCGCAGTACCAGAAACTGGTGTGTGCTAATTTTTTTTTTTAATTTCTGATATTATTTTTCATTTTTAATTTGTTTGCT AATACAAATATGTTTTTTTATTTTTTAATTCAGAAGCAGCAGAGGTAGCTGAAATATTGGCTCAGTATGGGGTAGAGGAA CATGAGTATACACCTGTGGTGAATGCTCTCAGAAAGAATCCTCAGGCATGGCTTGATTTCATGATGAAGTAAGTTTCATG ATCCCAAATCAACAAATTTGAACCTACATGCTTCTTATTTTATTTTATTTTACTATGTGTTAACTGTGATCTATATGTAT TGAATATTTTAAGTGTGAATAGTTGAACTGCGAGATAGGGATTCAAAAGTGGCACCACCCACTCAGAAGATAGAAAAGCC ACTTTTGGCTTTGTGGATACAAATTGCAATGTAGTTTTCACTTTTTGATTGTGGTCAGTATAGAGTCCAAAATTTGGTCA TGCGCGCTTCTGATACATACTCTTTATGAACTAACTCATTTGTTTGTTTTTCCTCAAACTATTTTTAATTTAGGTTTAAT TACACTTTTTCTTTCTTTTTGTTTGAAAAATGTGTGATTTTAGTCTCTATATTTTCTATTAAGTCTTAACATTTGATAAA ATAAGTCAAAATGTTAACTTGTCATCTAAAAGTTGGCATTTATCACTTTTTTATGTTGAAAATAACATAAATCATCTTAA ATTGTCATTCGCGTAAAAAAATTGTGATTGGCGTCAACTTTTTTCATTTTTTATGTCATTTTTTTTCCATTAATACTTTG ATGATAAGTTATCATTTGGACACAATTTGTTCAATTTTAAAAGTAGAAAGAGACATAATTTGAGCAAATGAACCTATAGA AACGAAAATCACGTATTCATGAAACTATGAGGATCAAAAGTGTAATTAAGTCATTAATTTAGGATGATATATAAGTTTCA AAATATTTTAATTTTTATTGTACCCATATACCTTGTGAAATAAGTGGCAATCCCTTTATATAAAATAAAAATGATTTTTC TTTAATCTAAAAAAGTCATGATAACTTTTTTTCTTGGTTAAAAGGAGGGCTAGGCCCAGGAAAGCGTAATGATAACTTTC AAAAAAAATAACTTAACGAAATAAGCTTAGCACATTCTACTTGGACCTGAAAATGAAGCCTGAAAAAACAGGGGAAATGG GGATGATTCTAGGGGCGTCACAGACTGGTACCATTTTGAGTGGTTTTATTTTATTATCGTATATAACTAGTTATGATGAT CCTGCGTAAGTACGATCTTATTAATGTTGCTGTACTTCTGATATGATAAGTGAACTAGTATATACACGGGTATTTTAATT TTTGAGATTTTTTTTTTTGGTACATCATATATAAAAAATACCTTTTATTTGAAATTTTAAAAAAGTAATCTTAGTAATTG ATATTTAATTGTATACCATTGATAAATATCAAAAGATGGGTCCATTGCTACTGCCTAGGGTGGCTCTGTAGTCTGTAAAT GCTTGGACAAAGTAACAAGGTGCTAACTTGGCTTTGCAGGTTTGAGTTGGGACTAGAGAAGCCAGATCCAAGAAGAGCAT TGCACAGTGCATTGACAATTGCAGTTGCTTACATATTGGGTGGGGCTGTTCCTCTCCTTCCTTACATTTTCATTCCAAAG GCATCAGATGCAGTGGTGATTTCAGTTGTGGTTACCTTGTTTGCATTGCTGGTCTTTGGCTTTGCCAAGGGATACTTCAC TGGTAATAAACCTATCAGGAGTGCTTTGGAAACTGCTCTTATTGGTGCTATTGCTTCTGCCGCTGCTTTCGGTTTGGCAA AGGCTTTCCATCCTTAGATCCATGCTCTGTACTTGGTGGCAATGAAGACTCTTCTGAAAACTATCATTCCCATCTTATTA GCTATTTATTAATAGTTGTTATTTCTTGCAGCTTTTCAATTCATTTTTCTACCATGGATTCATAAACAATCCCCCTTTTG AACTTTTGTCGTGAACTTTTGTGGTTAGTATCATTTGGCAATTTAATCGTC
CDS sequence (LotjaGi1g1v0016300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTCCGCCGAACAGAGAATAAGCCTCATCGAACCTGACACTACTACTCAGGGTCTTCTCAACAACCACACCGAGAA GCATTTCACCGCCGGCGATATCGTCCGCGACATCATCATCGGCGTCTCCGACGGCCTCACCGTCCCCTTCGCCCTCGCCG CTGGACTCTCCGGCGCCAATGCCACCTCCTCCATCGTCCTCACCGCCGGCATCGCAGAAGTCGCCGCCGGCGCCATCTCC ATGGGTCTCGGCGGGTATTTGGCGGCAAAAAGTGAAGCTGATCATTACGACAGAGAATTGAGAAGGGAGCAAGAAGAAAT CATCGCAGTACCAGAAACTGAAGCAGCAGAGGTAGCTGAAATATTGGCTCAGTATGGGGTAGAGGAACATGAGTATACAC CTGTGGTGAATGCTCTCAGAAAGAATCCTCAGGCATGGCTTGATTTCATGATGAAGTTTGAGTTGGGACTAGAGAAGCCA GATCCAAGAAGAGCATTGCACAGTGCATTGACAATTGCAGTTGCTTACATATTGGGTGGGGCTGTTCCTCTCCTTCCTTA CATTTTCATTCCAAAGGCATCAGATGCAGTGGTGATTTCAGTTGTGGTTACCTTGTTTGCATTGCTGGTCTTTGGCTTTG CCAAGGGATACTTCACTGGTAATAAACCTATCAGGAGTGCTTTGGAAACTGCTCTTATTGGTGCTATTGCTTCTGCCGCT GCTTTCGGTTTGGCAAAGGCTTTCCATCCTTAG
Protein sequence (LotjaGi1g1v0016300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSAEQRISLIEPDTTTQGLLNNHTEKHFTAGDIVRDIIIGVSDGLTVPFALAAGLSGANATSSIVLTAGIAEVAAGAIS MGLGGYLAAKSEADHYDRELRREQEEIIAVPETEAAEVAEILAQYGVEEHEYTPVVNALRKNPQAWLDFMMKFELGLEKP DPRRALHSALTIAVAYILGGAVPLLPYIFIPKASDAVVISVVVTLFALLVFGFAKGYFTGNKPIRSALETALIGAIASAA AFGLAKAFHP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 168 | 168 | - | – | |
| CDD | 14 | 248 | 235 | 3.53818E-109 | – | |
| PANTHER | 19 | 249 | 231 | 4.0E-109 | ||
| PANTHER | 19 | 249 | 231 | 4.0E-109 | – | |
| Pfam | 35 | 245 | 211 | 1.8E-71 | ||
| TMHMM | 38 | 60 | 23 | - | – | |
| TMHMM | 65 | 87 | 23 | - | – | |
| Coils | 86 | 106 | 21 | - | – | |
| Phobius | 169 | 190 | 22 | - | – | |
| TMHMM | 169 | 191 | 23 | - | – | |
| Phobius | 191 | 195 | 5 | - | – | |
| TMHMM | 196 | 218 | 23 | - | – | |
| Phobius | 196 | 218 | 23 | - | – | |
| Phobius | 219 | 229 | 11 | - | – | |
| Phobius | 230 | 248 | 19 | - | – | |
| TMHMM | 231 | 248 | 18 | - | – | |
| Phobius | 249 | 250 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Manganese ion transmembrane transporter activity | Enables the transfer of manganese (Mn) ions from one side of a membrane to the other. | ||
| Biological process | Cellular manganese ion homeostasis | Any process involved in the maintenance of an internal steady state of manganese ions at the level of a cell. |
Expression pattern of LotjaGi1g1v0016300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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