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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0017000 |
| Transcript ID | LotjaGi1g1v0017000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Potassium channel; TAIR: AT5G55630.1 Outward rectifying potassium channel protein; Swiss-Prot: sp|Q8LBL1|KCO1_ARATH Two-pore potassium channel 1; TrEMBL-Plants: tr|I3S745|I3S745_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0017000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2149812..2153914) extracted from Lotus japonicus Gifu genome v1.2.
AGCCATAAGAAAATATGAAAGAGGTGAAGAAGAATGGCTGCAACTTGCAACAGAAACGGACGGTGCGAACATAATAAGTT TTTTTTGTGCCAAATCATGTCATTTTCATTTTTCTGGTAACATGTCTGAAAAGGTCAAAATATAGTTGAAACTGAAAGAA ACAAAACCTGGCCACATATATATATGGATCTATTTTTCTTTTAAAAAATTATTTATTTATTACATAAGCAATTTCTCTAA TTCATAATTGATTATGGATAAATTAGGAACATGGGATCCACTTCCACTGAATTCAGAAGCTTTACGAAGACTCAGCACTG CAAAACTCATCTTCTGATCAGCAACACCAGAAAGAATCAATTGAAAGGTGAAACAGTCCAAAGCATTTTGATTGCTATTG TTATGGCTTTGTGTCCATTTTTTTTGTCTTTTTAGTTCAATACATGCCTTTCTTTCATAATAGTATGATTGGAATTATTA TTGGTTGTTACTTGTTAGTCTATAAACTCTGTAAATTTCACTTCTTTTCCAGTTTTAGTAAAATGGGTGTTTTCTTAATC TTCAAGGTTGGATTTGTGTAGCACTATTGCTATTTCTGAAGATCTTATGCTCCATGAAATGAACTGCAGTTGCACAAGAT TTTCACATGATGAACATGGAAAGTGTTAAAGTTGGTGCCAACTTAGATCCACTCTATTAATTCAGTTTATCCTAAAATTA GCATGGCTGTTCAATTGACAAAGTAGAAAGTTTTTATTTTTGGGTTGTGATCTACTGATCCTGAACCCCATTTCTTTCAG GTGTATGAATGAACTGAGCAAAAAAAAGCAAAGGAATGAATTTATTTCAAAGCTATGTTGTTTGAACAAAACCAAAATAG AAACTTGTTTTACTTCATGAGGTTCCTTGCACTTTCTCTTCCCTTTTACTCTGTTTCCCCCCAAGGAAATTAAGAGTGTT TACACATAAATTTCTGACTAAGGACTTAACTAGGAAGATTGTGTAAGACATCACTGTTGATGTAAATTTTATCTTAATTT TCCGTGTTAATTATTTTTCTTTGCTCTTTTTCCTTCTCATCAAAAGCTTCATGTATGAAGATGCTATTATGCTACTTCTA ATGCTCATGAGTTATTGTGCTTACAAAGTCACTGTTCTGTTCTATAGTTCAAAGATATGGATGCAGTTTTTTTCATTTTC TTGAACTGGGGACATACACATTCTACATGGATTATCTGATGATCCAAATGAACTTATATTGTGCTTGATGTAGTTAGTTG GAAATAGAACTTGGATTGATTACCACTGCCTATTCTAGTATACTAGGTTTTTTTTTTCCCCCATGCCCTATCAATGAATT TATGTATGTTTGGTTTAACGTTTAAACCTTACAGTTACAGAATCACTTTTAGTCTCAGCATACTTTTAAATGCCTTCAAG TATTATGGCTTTATGTGCATGTTTGAATCAACATTATCAGAATTGATTTGATAAAAGGGAGGTGAAAGTGGTTGTTCTGG CTCGTTTATGGGAAAAGTGATTTCTATAGGGTAGTGTTGTGAAATCCAACTATAAAATCTCACAATTAATTATGTCCGTA GCTACTCTGCAGAAATTATTTTCTTGATTGCCAAACATGATTCTGGTCAATGAGAATTGATTCTATGACTCCCAGACATA GAGCCAAACACACACTGCGTGTATATTCATGTACTTTCATTTGTTATTTGACTGAAGCAGCTGATTTGGACTGCTTTGCA GCTGAATCCGGTCATTTATTACTGATTCTTGCTTTCGAAACTCATCTGCATGGCCAACAATGATTCACAGGAGCCCTTGA TATCGGGATCAATGGATCCTTCTGCTCAAAAGGCTCGACTGCAGTTAAAGAAAAGAAGGCTCATCCGTTCTAGAAGCGCT CCTCAAACAGATCTTGACCCTCCTGAGACAAATGGCAACAAATTAATTCCCCTTTCCGGGTCCATATTTGGGAGTTTACA TCCAAGCTTTAGAAAAGTAGCTTTATGTCTTGCAGTCTATGTAGGTGTTGGTGCTTTGGCCTTCTATCTTGTCAGGAACC AGATCAAGGGGTTGAAAACAAACAGATTCCTTGATGCTTTGTACTTCACAATTGTGACAATGACCACTGTTGGATATGGA GACCTTGTGCCTAATAGCAACCTCACAAAATTACTAGCATGTGCTTTTGTTTTCTCTGGTATGGCAGTGGTTGGTTTAAT CCTAAGCAAAGCTGCAGATTATTTGGTTGAGAAACAAGAAGCTTTGCTAGTTAAAGCTATGCACATGAGAGAAAACTTTG GTCCATCTGAAATTTTAAAGGAGATTGAGACCAATAAAACAAGGTACAAGTTTCTTCTGGTCTTGTTGCTTCTTTTGGTT CTCATCACTGTGGGGACAATTTTCTTGGTCAGTGTTGAGAAATTGGATTTTGTTGATGCCTTCTACTGTGTTTGCTCCAC AATCACAACTCTGGGGTATGGGGATAAGAGTTTCTCAACTCAAGCAGGAAGAGTATTTGCTGTGATTTGGATATTGATAG GTACTATTACTGTGGCTCAGTTTTTCCTCTACATGGCTGAGCTGAACACTGAAAGCAGACAAAAGGAACTTGCCAAGTGG GTTCTTGAAAGGAAGATAACTCATCTGGATTTGGAGGCTGCTGATCTTGATGATGATGGGACTGTTGGGTCAGTTGAGCA TTCTTTCTTAGTCTTATTTATTGTTGGCATTGCCTTTGGAAGAACTTATTTTATATCATAAGCACTTATGCAAACGTTTG GGTAAGCTTATGAAAATAGCAAGGTGCGTTTGACTGAACAGTTTAATTAAGCACTTAACAATAAACGTTTATCAAATAAG CATTTACTCATAAGCTAAATTGAGAAGGTTATTGAAACAAGCTCAATATCTTATGGATTAGTATAATTGCTTATTCATAA GCTAATCTAAGCAGCTTACAAACATAAACTCAAAACAACTTATACATAAGTCATAAGTTATTTTATAAGCTTACCTAAAC ACTTACATAAGTTTTTATGCTATAAGATAAGCTCAAATAAGTTATTTCTAACACGGCTTAAACTCTTTTGAGCTTATCTT TATAAGCTTCCAAGAATAGCCTACAAATAAGCCTACTTATTGGCCCTGTTTGTAAGAGTTTTTTTTAGCTTATCTTATAG CATAAGCGCTTATGCAAGTGTTTGAGAAATCTTATGTAAATACCTTATGACCTACTACCTATAAGTGTTTTGAGCTTATT TTCATCAGTTGTTCATATTAATTTATGAATGAGAGCTTATGCTTACCTATAACCTATTTTCAGCTTTTTCAATAAGTTTC TCAAATTAGTTTATGGATAAGTGTTTGTATGATTAACGCTTATTATCATTAGTGTTTAATTAAGTTGTTTAACTAAACAC ACCCTTGTTATACTACCAATGGTTTACATGGCTTCATTTATTTTAATCTGTCACAGGGCTGCTGAATTTGTCATCTATAA GCTGAAGGAGATGGGGAAGATTAGTCAAGAAGATATATCACTATTTTTGAAGGAGTTTGAAGAGCTTGATGTTGATCAGT CTGGTACATTGTCTGTTTCTGATATAACGCTTGCTCAGTCATCTTAGACTAACACGTTATACACACCAAGTTGTTGTAGG GTGGTTCTCCTTTTTCACTTCAGTGCGGAAATTTGTCAACAAGATATAACACTATTTTAGATTTTTAGTTACTAATATTT ATTCTCCTTCATTTAAGATAAATTTTCAAAATTAATGTTAACTCAATTTTCAATTGTCCTTAGTAATTAGAGGTTAAGAG AGAGATGATCAAGAGTTCGATTTACATGCTACATTTTTTTTTTTTGTTTTTTGGTAAGCCAAGTGTATTCTTCGCCGTAA GTGCTCGCACAAAGCGGATTCACATGCTATATTGATAATACACAATGTTGATTAATAATTTTTTTTTTGAATTTAATGTT GATTAATAATTAATTAAGTGTATTTTGTTAAAAACAACAAGAGAACAATACAGTTGGATATTATGAAAAATCATGTCATA CCTTTAGTTTGATTTTAATAAAA
CDS sequence (LotjaGi1g1v0017000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCCTTCTGCTCAAAAGGCTCGACTGCAGTTAAAGAAAAGAAGGCTCATCCGTTCTAGAAGCGCTCCTCAAACAGA TCTTGACCCTCCTGAGACAAATGGCAACAAATTAATTCCCCTTTCCGGGTCCATATTTGGGAGTTTACATCCAAGCTTTA GAAAAGTAGCTTTATGTCTTGCAGTCTATGTAGGTGTTGGTGCTTTGGCCTTCTATCTTGTCAGGAACCAGATCAAGGGG TTGAAAACAAACAGATTCCTTGATGCTTTGTACTTCACAATTGTGACAATGACCACTGTTGGATATGGAGACCTTGTGCC TAATAGCAACCTCACAAAATTACTAGCATGTGCTTTTGTTTTCTCTGGTATGGCAGTGGTTGGTTTAATCCTAAGCAAAG CTGCAGATTATTTGGTTGAGAAACAAGAAGCTTTGCTAGTTAAAGCTATGCACATGAGAGAAAACTTTGGTCCATCTGAA ATTTTAAAGGAGATTGAGACCAATAAAACAAGGTACAAGTTTCTTCTGGTCTTGTTGCTTCTTTTGGTTCTCATCACTGT GGGGACAATTTTCTTGGTCAGTGTTGAGAAATTGGATTTTGTTGATGCCTTCTACTGTGTTTGCTCCACAATCACAACTC TGGGGTATGGGGATAAGAGTTTCTCAACTCAAGCAGGAAGAGTATTTGCTGTGATTTGGATATTGATAGGTACTATTACT GTGGCTCAGTTTTTCCTCTACATGGCTGAGCTGAACACTGAAAGCAGACAAAAGGAACTTGCCAAGTGGGTTCTTGAAAG GAAGATAACTCATCTGGATTTGGAGGCTGCTGATCTTGATGATGATGGGACTGTTGGGGCTGCTGAATTTGTCATCTATA AGCTGAAGGAGATGGGGAAGATTAGTCAAGAAGATATATCACTATTTTTGAAGGAGTTTGAAGAGCTTGATGTTGATCAG TCTGGTACATTGTCTGTTTCTGATATAACGCTTGCTCAGTCATCTTAG
Protein sequence (LotjaGi1g1v0017000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPSAQKARLQLKKRRLIRSRSAPQTDLDPPETNGNKLIPLSGSIFGSLHPSFRKVALCLAVYVGVGALAFYLVRNQIKG LKTNRFLDALYFTIVTMTTVGYGDLVPNSNLTKLLACAFVFSGMAVVGLILSKAADYLVEKQEALLVKAMHMRENFGPSE ILKEIETNKTRYKFLLVLLLLLVLITVGTIFLVSVEKLDFVDAFYCVCSTITTLGYGDKSFSTQAGRVFAVIWILIGTIT VAQFFLYMAELNTESRQKELAKWVLERKITHLDLEAADLDDDGTVGAAEFVIYKLKEMGKISQEDISLFLKEFEELDVDQ SGTLSVSDITLAQSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 52 | 52 | - | – | |
| PANTHER | 9 | 334 | 326 | 1.4E-172 | ||
| PANTHER | 9 | 334 | 326 | 1.4E-172 | – | |
| Gene3D | 51 | 145 | 95 | 3.9E-22 | – | |
| SUPERFAMILY | 52 | 152 | 101 | 8.77E-25 | – | |
| Phobius | 53 | 74 | 22 | - | – | |
| TMHMM | 56 | 74 | 19 | - | – | |
| Pfam | 59 | 139 | 81 | 1.0E-17 | ||
| Phobius | 75 | 85 | 11 | - | – | |
| Phobius | 86 | 105 | 20 | - | – | |
| TMHMM | 87 | 106 | 20 | - | – | |
| Phobius | 106 | 110 | 5 | - | – | |
| TMHMM | 110 | 132 | 23 | - | – | |
| Phobius | 111 | 131 | 21 | - | – | |
| Phobius | 132 | 173 | 42 | - | – | |
| SUPERFAMILY | 166 | 271 | 106 | 2.09E-22 | – | |
| TMHMM | 173 | 195 | 23 | - | – | |
| Phobius | 174 | 195 | 22 | - | – | |
| Gene3D | 178 | 239 | 62 | 1.4E-14 | – | |
| Pfam | 180 | 251 | 72 | 6.2E-16 | ||
| Phobius | 196 | 227 | 32 | - | – | |
| PRINTS | 209 | 237 | 29 | 5.7E-7 | ||
| TMHMM | 225 | 247 | 23 | - | – | |
| Phobius | 228 | 249 | 22 | - | – | |
| SUPERFAMILY | 237 | 331 | 95 | 3.34E-7 | ||
| Gene3D | 240 | 334 | 95 | 2.1E-5 | – | |
| Phobius | 250 | 335 | 86 | - | – | |
| ProSitePatterns | 278 | 290 | 13 | - | ||
| PRINTS | 283 | 292 | 10 | 5.7E-7 | ||
| ProSitePatterns | 317 | 329 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Potassium channel activity | Enables the facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. | ||
| Cellular component | Integral component of plasma membrane | The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Cellular component | Plant-type vacuole membrane | The lipid bilayer surrounding a vacuole that retains the same shape regardless of cell cycle phase. The membrane separates its contents from the cytoplasm of the cell. An example of this component is found in Arabidopsis thaliana. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Potassium ion leak channel activity | Enables the transport of a potassium ion across a membrane via a narrow pore channel that is open even in an unstimulated or 'resting' state. | ||
| Biological process | Cellular potassium ion homeostasis | Any process involved in the maintenance of an internal steady state of potassium ions at the level of a cell. | ||
| Biological process | Potassium ion transmembrane transport | A process in which a potassium ion is transported from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0017000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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