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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0017200 |
| Transcript ID | LotjaGi1g1v0017200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT5G55590.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9FM79|PME62_ARATH Pectinesterase QRT1; TrEMBL-Plants: tr|A0A1J7GUK5|A0A1J7GUK5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0017200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2162283..2165407) extracted from Lotus japonicus Gifu genome v1.2.
CCAACTCCAATTATGAAACTCTCCCTATTCATGTTTCATAATAGCATCATGCAATGCAAGCCTTAGTAACGGTCAATAAT TCAATGCAACCAGCTCCATCACGCTTCAACTCTTATAACCGTTACTTAAAGCTTCTTCTTTTTTCTCATTGGAGTTTCAT GTTCTCATCACATTGATCTTTCACAATCACATGTAACATTACATTTGACACCTGAACCATGATGTTGCAGAGTTTGATGA TGATGGTGTTGTCAGTTTTGGTTTTTCTTATGTGGGTTCAGGTGGATTTAGCACAAGGTGGCCATGATCATGATCATGTT AGGAATTACATTAGTTGGGAAGATTTGAAGGTGGGTGAGCAAAGTTTGGCATTGGAAACCAACAATGATGTTAGAGTTAT CATGGTTGATCAGCATGGAAATGGTCATTCAAAAACTGTTCAAGGTGCTGTGGATATGGTTCCAGATCAGAACAGACAGA GGGTCAAAATATACATTTTTCCTGGAATTTACAGGTCAGAAAATAATTGAACACTTTCCACAATATATTCTTTTTTTTTT TACTTTCACCACCCTTGTGGCATTATCTAGTCTAATCAAAATTAGTTGGTTTTTTTGAAGTTGTTTTCATTCTTCGCCTT AATTTTGCTTTAGAAAAGTCACATACTTGTGTTTTGGGAAACAAATCACCTTGAGTACATATTTGGAAATCCTACTATAA TCAATTTATAAGTCAAAATCAAGTAGCTTCAGAATCGATTCCAATGAAAAAGAAGTTAATTCAAATATGTTATGAGTTTG GAAATCAGAAATCCTGCTACAATTGGTTTTAAAGTTAAAATCAAGTAGCTTTTGTGTGCCGGAATTAACTCTGACAAAAA AGAAGCTAATCCATACAGGTTATGAGTTTGGAAATCTGAAATCCTGCTACAATTGATTTCGATGTTAAGACCAAGTAGTT TATGCGTGTCAGAATTGATTCTGGCGAAACAGAAGTTGATCCAAACATTTTATGAGTTTGGTTGGTCTTTGCTTTAGCAG TTCCCAGATTTCCCAAAATCTTTCAAGGCTTTTATCCTTATTCCTGACCTTTCATGAAAAAATGACTTGTATGTTTTGAA CATTGTTTCTATGCAACTTGTGCAGAGAAAAAGTGCTTGTGCCAAGCACCAAGCCTTATATATCATTTATAGGTCAAAAA AATCAAACAACAAGTGCTATAATTACTTGGAATAGCAAATCATCAGATAGAGGTCCAAATGGCCAAGCATTGGGCACCTA TGACTCAGCAACTGTAGTAGTAGCATCAGATTATTTCTGTGCAACTAAGATCACTTTTGAGGTAAGGACACTAATGCTAC ATAAAGAGCTCGTTCAGATACATACAGATCAGAGTATTTTTTGGAGCTTATCTAGTTCTTTTTCTAGTAGATAAGCTTCA ATAAGTGTTCTTTAGTCTACATCTAAACGGACTCAAACACAACATGAACAACCAGATGCAAATTTGAAAACTTTCAATCT TTGGGTGGTTGCAGAACACAGTGGTTGCAGCTCCTGGTGAAAATGGAATGCAAGCAGTGGCACTGAGGGTGGACAGCAAC AGGGCCATGTTTTATAAAGTTAGGATAAAGGGAACACAGGACACACTCTTAGACAACACAGGAACACATTACTTCTACAA GTGTAGAATCTTTGGAGAAGTTGATTTTATCTTTGGCAATGCAAAGTCACTCTATGAGGTAAAATGAGCCTTTCTCTATT GTCACTACTAAAACAAAAGCTTTTACCAAGTCCATTTGTGTGCTCAAGCAATAGAGCAGTGAATAATTTGTTAGAGAAAT TAAAGATGAAGAATGCAGAAAATGAGAAGTTTCTATTATTTTGCTACACATGCTACATGGTTAGTAGTAACATAGAAATA ATACCCTTGGTGGCAAATCTGGTGCTGTAAAACTCCCGCTATGAGCGATCCAGGGAGGGGCTCGTACCATTTTTTTGGAT TTTATGTGGTAGCCTTACCTTGCATTTTTGCAAGCTAATTCTTTGGCTTTAATATGTGACCACAAAGTCACATGGCAGCA ACTTCACCATTGCGCCGAGGCTCGACCTCAGCAAGAAATAACAGTCTTTAAATAAGAATCATGCAGTTAGCTCCTTACTC ATGACCTTATGTCTTTGTAATCATGCAACCTTTATCTTCTAAATACTAGTACCTTTATTTGTAACATGATTCTGACACTT GAGAGGCTGGTTTCTACTGAACAGAAATGTCGCCTTGAGTCAATAGCTAAGAACTATGGAGCAATTGCAGCACATCACAG GGATTCACCACATGAAGATACAGGTTTTTCTTTTGTAGGATGCAATATCAGAGGAAGTGGAAGTGTGTACCTTGGAAGGG CATGGGGGGACTACTCAAGAATAATATACTCACATTGTAAAATGGATGATATTATCAATCCTGAAGGATGGTCAGAATGG GATCATCCAGAAAGAAAGAAGTATATATAATGTCACACTCACTTATTCTAGATTTGACACCAGGAGAAATGCTTATTAAT TGTACCAATATCCTTGCAACAATCTTTTTTTATTGGTTTAAATTCATGTGGTTCCAGCAGAGCCAATACTCATGAATTTC AACTATAAAGAAAAGTGTTGTAAGGATAGTGGTTATGAATATTGATAGCATTTATGTGACTTTAGTATTCTAGAATTCAA AGTGCATTTTTATAGCTAAGTATGTATGATTTCAGAACTGCAGTGTTTGGTGAGTATCAGTGCAATGGAAGAGGAGCAGA TAGAAGAAATAGAGTGCCTTGGTCAAAATCATTCAGATATGTGGAAGCAAGGCCCTTCTTGGACAAGAGTTTCATAAATG GAGACATGTGGCTCAGACTGTAGCGTTATTACCTTGCATCAGTTCAGTGACTGTAGCGTTATTACCTTCCATTGTTTCAT TGGTCACGTTCAGTGACTTGCATCAACTCATTGGATGCTTTGCTTGCAAATCCCCACTTGAAACTAGTAAGAGAATTTTT TTTGCTTGTATATGTGGTTAGTGGGGTGTAAGGAGACCCAGATGCTCAATCTGTATCATGATCATCAATCATAATGAATT GGAAC
CDS sequence (LotjaGi1g1v0017200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGTTGCAGAGTTTGATGATGATGGTGTTGTCAGTTTTGGTTTTTCTTATGTGGGTTCAGGTGGATTTAGCACAAGG TGGCCATGATCATGATCATGTTAGGAATTACATTAGTTGGGAAGATTTGAAGGTGGGTGAGCAAAGTTTGGCATTGGAAA CCAACAATGATGTTAGAGTTATCATGGTTGATCAGCATGGAAATGGTCATTCAAAAACTGTTCAAGGTGCTGTGGATATG GTTCCAGATCAGAACAGACAGAGGGTCAAAATATACATTTTTCCTGGAATTTACAGAGAAAAAGTGCTTGTGCCAAGCAC CAAGCCTTATATATCATTTATAGGTCAAAAAAATCAAACAACAAGTGCTATAATTACTTGGAATAGCAAATCATCAGATA GAGGTCCAAATGGCCAAGCATTGGGCACCTATGACTCAGCAACTGTAGTAGTAGCATCAGATTATTTCTGTGCAACTAAG ATCACTTTTGAGAACACAGTGGTTGCAGCTCCTGGTGAAAATGGAATGCAAGCAGTGGCACTGAGGGTGGACAGCAACAG GGCCATGTTTTATAAAGTTAGGATAAAGGGAACACAGGACACACTCTTAGACAACACAGGAACACATTACTTCTACAAGT GTAGAATCTTTGGAGAAGTTGATTTTATCTTTGGCAATGCAAAGTCACTCTATGAGAAATGTCGCCTTGAGTCAATAGCT AAGAACTATGGAGCAATTGCAGCACATCACAGGGATTCACCACATGAAGATACAGGTTTTTCTTTTGTAGGATGCAATAT CAGAGGAAGTGGAAGTGTGTACCTTGGAAGGGCATGGGGGGACTACTCAAGAATAATATACTCACATTGTAAAATGGATG ATATTATCAATCCTGAAGGATGGTCAGAATGGGATCATCCAGAAAGAAAGAAAACTGCAGTGTTTGGTGAGTATCAGTGC AATGGAAGAGGAGCAGATAGAAGAAATAGAGTGCCTTGGTCAAAATCATTCAGATATGTGGAAGCAAGGCCCTTCTTGGA CAAGAGTTTCATAAATGGAGACATGTGGCTCAGACTGTAG
Protein sequence (LotjaGi1g1v0017200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMLQSLMMMVLSVLVFLMWVQVDLAQGGHDHDHVRNYISWEDLKVGEQSLALETNNDVRVIMVDQHGNGHSKTVQGAVDM VPDQNRQRVKIYIFPGIYREKVLVPSTKPYISFIGQKNQTTSAIITWNSKSSDRGPNGQALGTYDSATVVVASDYFCATK ITFENTVVAAPGENGMQAVALRVDSNRAMFYKVRIKGTQDTLLDNTGTHYFYKCRIFGEVDFIFGNAKSLYEKCRLESIA KNYGAIAAHHRDSPHEDTGFSFVGCNIRGSGSVYLGRAWGDYSRIIYSHCKMDDIINPEGWSEWDHPERKKTAVFGEYQC NGRGADRRNRVPWSKSFRYVEARPFLDKSFINGDMWLRL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 9 | 9 | - | – | |
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| PANTHER | 9 | 359 | 351 | 9.1E-177 | – | |
| PANTHER | 9 | 359 | 351 | 9.1E-177 | – | |
| Phobius | 10 | 20 | 11 | - | – | |
| Phobius | 21 | 25 | 5 | - | – | |
| Phobius | 26 | 359 | 334 | - | – | |
| Gene3D | 58 | 359 | 302 | 1.3E-100 | ||
| SUPERFAMILY | 60 | 357 | 298 | 5.57E-78 | ||
| Pfam | 61 | 354 | 294 | 9.2E-68 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi1g1v0017200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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