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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0017300 |
| Transcript ID | LotjaGi1g1v0017300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT5G55590.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9FM79|PME62_ARATH Pectinesterase QRT1; TrEMBL-Plants: tr|K7KBL9|K7KBL9_SOYBN Pectinesterase; Found in the gene: LotjaGi1g1v0017300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2167438..2172571) extracted from Lotus japonicus Gifu genome v1.2.
AATGAAAAACCATTGGAGTGGGTAAAAGTTGAATGAAGTGTTGAATTGGAGAGAGAAGATGATGTGGAGTGTTGGGAAGA GAAAAAGTGGAGTGTTGAGGGTGTTGAATGTTGAAACCATTGGAGATAGTCTAAGGACTTATTTAGATTAAAAAACAAAT TTCAGGGACTCTGAATCGGAAAAACTTTTTTCAGGAACTTATTTTCATACGCGAGACAATTTCAGGGACCTCCAGAGTAT TTAAGCCTATAGTATATAGAACAATTTCATGCTGCAGCTAAACAGTTTCTACCTAAAGTCGGTTTTTATTTCACCATTAT TCTTGCAATCTGCAACTGCCATTCCAATCTTAATCAATAGTGTTTATGGTGATGTGTTCACATTTGATCCTGAGTAATTC ATAGAGTTATTTCAATAAAAAATAAGAGTAAAGAGAATCTTAATTGCATCCAATGTAACTCTTACCACACCCCATGAAGT TACAACCGTTCTTCTGGTTGCTGACTCCTCTATAAACTTAAACAACATCACTGCTTCAGCAACATTACTTAGTAAAATTT CATAAATCTGAGTTTCTTTATTTAAACTCAATATATATTCACCTTTGCATTCCCATTCTTTTGCTACTACTTTCTCTCAC CCTATGAAAAAGTCTTTCATGTGGGATTGGAACACTGCTCTGTATATATTGATTTATTGTTACTACATTCCCTCATAGCA TTAACCTTTCTGAGAGTCTAGACTTAACTCACATATCCTAAAGATGAAATCATCAGTTTTTGGAGCATTGGTTTTGGTTT TTCAAGTTTTATTGTTGTTGGTGTGTTGTGTTCAGGTGAAAAGTGTTGGTGGCCAAACTAGAAAGTTCATTACTTGGGAT GACTTCACGGTGAATGAACAGAATCTAGCCTCCGATGGTGCTGAAAGAGTTATAGTGGTGGATCAGAGTGGTCATGGAGA TTCAAAAACTGTTCAAGGGGCTGTAGATTTGGTTCCAGAAAACAACACAGAAAGAATCAAAATATATATCTATCCAGGAA CTTACAGGTATATAATAACAAGAATTGAGTTTGAGAATTGTTTTCAAAACATAAGATTTTACATAAATATTCTCATCAGG TTTTTCATCCTAATTCTAATCACAACCATTTGACAAGTGATATTATAACATATATATAGTAACTGATATCATTGCTAATA ATAACATTTTCGGATTGGGTTCCATGCAGTTAGGATAGTTCTAAATTCGCGCATCGAAGTCATCCGAGCCGTTGAAATGA GATCAGAAAACTCATGTTTCAGCAAGATTAAACAGCGCAAATAACCTCAAAATTTGAGCCATCTAAATTTAATTGAACGG CTCATATTGGCGAATTTAGGATTTTCCTAGCGGCATGACATCCAAAATCCATATATGCTCCTTTATCACAAGGAAAGTGT GGTTTGGGAATGAGATTTTTTTTATACCTTTCTGAAGAAAAATATGTATCACATGCATGATTTAGGTGTCAACATTTGTA ATAATTAAGATAAAGAAACAAGATGCAGCTAATAAGCATGTTTGTAAATTCTTCTTTAAATTCTGGAGCTATAATCAATT AGTAGCTTCTGATCCAAACAGACTAACAATTTATGCAGAGAAAGAGTGCATGTACCAAGAGGCAAGCCTTACATTTCCTT CATAGGCAAACCCAACATAACTGTCAATGGCAGTGATCTAAATGTAAGGGCCAATGCCAATGCAGTGAATGTAACCAACA TTGCCAATGCCATACCCATCATCACAAATAGTACTAAAGCATCAGACAAAGGCTCAGATGGCCAAGAAATGGGCACAGTC GGTACAGCAACTGTGTGGATAGAATCAGATTTCTTCTGTGCAACTAAACTTACTATTGAGGTAAGAACAAACTCATTGCT ATCTACCCTCTTAATCCCAGAATCTGATGCAGATTAGGCTTAAAATTTGAGTCATTCCAATCTTAATTGAACGACTCAGA TTCATTGACAACATGGATTTAGGAATTTGCTGACCGCAGAGAATCTACACTCAAGATTGAGGGGATAAAATTAATATGTA TTTGATCGGTCGAATCTTATGAGGGAAAAAGTATCTCTGTCTTTAGTTTTCACCCCTAATGGAACCAAAATGTTCTATGG ATAATCCTAAGAATTCACCTAATATTAGTTTGATGTATGCACTGTCTCAAGCCTGAGTAACATATGTTGTTTACAACATT TTGTGCCTTTTTTTGTGCAGAATTTGGTTGGTAAAGATGCAGAAAAGCGTCAAGCTGTAGCTTTGAGGGTGGATGGGGAT AAAGCTGTATTCTATCAAGTTAGGCTTGTGGGGGAGCAGGACACCCTTCTAGATAGCAATGGAACACATTATTTCTACAA AAGTTACATTGAAGGATCCGTTGATTTCATATGTGGCAATGCAAAATCATTGTTCCATGTATAAATTTTGCATTCATAAG TTCTTCTGATTGCTACGTTCAATTTTAATCATTGAAGGAACTATTTTGCCTATTTCTATAGTTGAGGGACTAAACTGATT GAGCCTAAATTTCTTAGAGACCAAAGTGACTATCAGCACTATTTTATGGTCCAAATTATATACATACCACACATATCTTA TGCAAAATATTTGTTCCCTTTTGATTCTAAGCTTTTTGGGTTTCTTTCTAACATTTCATTGTTGATTTCTGCCACCAGGA GTGTATACTGTACTCTGTAGCTGAGTTTTGGGGGGCAATTGCAGCTCATCACAGGGAATCACCTGATGAAGACACAGGAT TTTCATTTGTTGATTGCACAATCAAAGGAAATGGTAGTGTCTTGCTAGGGAGAGCTTGGGGGGAGTATGCTACAACAATA TATTCAAACTGTGACATGGATGATATCATTAGCCCCATGGGATGGAGTGATTGGGATGTTCCATCTAGACAGAGGTATCA TAATATTTTTATTTGACCAGGAAACAAGCTAATTTTAGATTATTCATGAAAAAAAAAACCTTTCTGGAGGAGCTAGTCCC ATCGGTATGTGATGATCCAACTCAAACACGATTGTCTCCTAGAGGATATATGTGGTCAAAGCATAATAAATAGAACTTTT ATTTTAAAATATAGCCCTAATTCTTAGATTTTTTTACAAGCTACTCTCAAATATGCTAAACATTTTTACAACAATAATGA TACTTGAACATACAAACAGTGCAGATATCTAACTGAAACCGCATTTTGTTTCTATCTATCTCGTTTTACATATATCAAAC CAATTACTTCTCTCTATTTTCTTCATTTCTCACTCCGGGTGTTTGTTGGATGTCTGCACTATGCAGATGTCTACAAATCA TTTTCTTTTTTATAATGGAAGTGTTTTTAAAAAAATGCAACAAACTCAAATTAATCTAACATGTTTCTGGTTTTGCAGGA CTGCACTGTTTGGGGAGTATCAATGTTCAGGAAAAGGATCAAATAGAACTGGGAGGGTGGAATGGTCAAAATCTCTAAGC AGTGAGGAAGCTAGGCCTTTCCTGGGCAGAGAGTACATATCTGGAGACGAATGGCTTAGACTACAATAATAACCACTTCA CCCACCATATAATATTCATATATGGTCCTCTTTTCATCTTACGTTTTCTTTATTTGTTTAGATAGCATCATAAAAAGATG AAATTATAAACAGTCATGGAATCGTGATCGATTATCTTAATTGTAAACAATTTTGTGTATAGTCCAAGTGTTTTTCTGCT CTTTGCTGAGGGCTAATTTATACCTGTGCTAGCACATGGAAGCAGTACTCTAAACTCCAAAGGACACTTAAATAATAACT GCCATAATAATCATTTAGGCGAATAATAATTGACATCAAGTAATAAATACAACTTTTTGCCATTGATGAAGAATCAGATT TTATCAAACCACCACCACCATGATAATTAATCCACCATTTTACATACTTAAGTGGAAAAGAAAAATCTCACGATAAAGGC ATAAATTCCCAATTACATCAAAGGTTAAAACTTAGATGCAGTAATATAAGTATTCTTTGTGCTCTTGCCCAAAAAAGTCT GATCACCCAATTTTTTTTAATGTTATAGGATTTTTTTAATGAAACAAATTCCCAACTTCTCACCAACGTTTATGCTGATC TAACTTTGGAGGAATATAAGGAACTCGTTGGGTGCTGAAATTTCAAGTGAATGAAGTGATCGATTGCCCTTTCAATTTTT TATTGTGTTTAGTGGCTGCTTTATCTACTTTTTAGTTTGTTAGTTTGAACCGTGGTTGAATTTCAGCAAACCCATAGTTA AAGTAATGCCTTTGACTTTGAGGCTTTGGAAATTTGATGCTTTCTGGAAAATTATCAACCTTTTAAGCTCAGTTTTGGTC TAGACTTTGGAAGCTTATAGGATAGTTAGTGTCTGTTGCCACCTTTTAGTGGAAAAAGTAATCCTTAGACTTACATAGAG TGGGAAGATGAAGGTGGGGAAAATATTTTCTCATCATACCTTTTAAGTGAATAAGAGAAAAATGAAATTGACTTCTTCAA AATTTACTAACTATGTCTTAGTTTGCTGGGACCAAGTGGATGGGAAGAGGTATGGTGAACCACTTGTGAGTATATGAAAA AAATCATGAGGAGGGTTGTAGACCTGGAGATTATAGGAAAGGTTGTGGTTGAGATTTTGTTGTGTATTGCATGGCAGAGG TAATCTCAAAAAAAGTGAGTGAAATTTTTGAAAGAATAAAATATAAGAATCATATGTGTACTAAACCCAAAAAGAAATAG AAAATGGATTAGTTAAATGAAAATGTGTGCTGGAATGTTAGTGTTAGAGAAAAAGTGAGTGACAACTGCTGATTAAAGAT ATAACTCACCCCCTCAAAAAAGAAGATATAACTTACCAATTGTCACCTTTTTGGTAGAAGTGGAAACAAACAATGGTAAC AATTTATTTGGATTTCATTTGATTAATTTTGAGTTTGTTTTTGTTCTAAGTAACAGCATTGTCAGTGTCACTACCCTGTA AGCACCTTGTGTGCTGGTATGTATCTTGTCCGTGTAAAAGAATTCTTGTAATATTGATGTGTTGATTGATGCAATCAATC ATCTTATGAGTTAT
CDS sequence (LotjaGi1g1v0017300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATCATCAGTTTTTGGAGCATTGGTTTTGGTTTTTCAAGTTTTATTGTTGTTGGTGTGTTGTGTTCAGGTGAAAAG TGTTGGTGGCCAAACTAGAAAGTTCATTACTTGGGATGACTTCACGGTGAATGAACAGAATCTAGCCTCCGATGGTGCTG AAAGAGTTATAGTGGTGGATCAGAGTGGTCATGGAGATTCAAAAACTGTTCAAGGGGCTGTAGATTTGGTTCCAGAAAAC AACACAGAAAGAATCAAAATATATATCTATCCAGGAACTTACAGAGAAAGAGTGCATGTACCAAGAGGCAAGCCTTACAT TTCCTTCATAGGCAAACCCAACATAACTGTCAATGGCAGTGATCTAAATGTAAGGGCCAATGCCAATGCAGTGAATGTAA CCAACATTGCCAATGCCATACCCATCATCACAAATAGTACTAAAGCATCAGACAAAGGCTCAGATGGCCAAGAAATGGGC ACAGTCGGTACAGCAACTGTGTGGATAGAATCAGATTTCTTCTGTGCAACTAAACTTACTATTGAGAATTTGGTTGGTAA AGATGCAGAAAAGCGTCAAGCTGTAGCTTTGAGGGTGGATGGGGATAAAGCTGTATTCTATCAAGTTAGGCTTGTGGGGG AGCAGGACACCCTTCTAGATAGCAATGGAACACATTATTTCTACAAAAGTTACATTGAAGGATCCGTTGATTTCATATGT GGCAATGCAAAATCATTGTTCCATGAGTGTATACTGTACTCTGTAGCTGAGTTTTGGGGGGCAATTGCAGCTCATCACAG GGAATCACCTGATGAAGACACAGGATTTTCATTTGTTGATTGCACAATCAAAGGAAATGGTAGTGTCTTGCTAGGGAGAG CTTGGGGGGAGTATGCTACAACAATATATTCAAACTGTGACATGGATGATATCATTAGCCCCATGGGATGGAGTGATTGG GATGTTCCATCTAGACAGAGGACTGCACTGTTTGGGGAGTATCAATGTTCAGGAAAAGGATCAAATAGAACTGGGAGGGT GGAATGGTCAAAATCTCTAAGCAGTGAGGAAGCTAGGCCTTTCCTGGGCAGAGAGTACATATCTGGAGACGAATGGCTTA GACTACAATAA
Protein sequence (LotjaGi1g1v0017300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKSSVFGALVLVFQVLLLLVCCVQVKSVGGQTRKFITWDDFTVNEQNLASDGAERVIVVDQSGHGDSKTVQGAVDLVPEN NTERIKIYIYPGTYRERVHVPRGKPYISFIGKPNITVNGSDLNVRANANAVNVTNIANAIPIITNSTKASDKGSDGQEMG TVGTATVWIESDFFCATKLTIENLVGKDAEKRQAVALRVDGDKAVFYQVRLVGEQDTLLDSNGTHYFYKSYIEGSVDFIC GNAKSLFHECILYSVAEFWGAIAAHHRESPDEDTGFSFVDCTIKGNGSVLLGRAWGEYATTIYSNCDMDDIISPMGWSDW DVPSRQRTALFGEYQCSGKGSNRTGRVEWSKSLSSEEARPFLGREYISGDEWLRLQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 4 | 4 | - | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 5 | 18 | 14 | - | – | |
| PANTHER | 12 | 375 | 364 | 2.9E-160 | – | |
| PANTHER | 12 | 375 | 364 | 2.9E-160 | – | |
| Phobius | 19 | 22 | 4 | - | – | |
| Phobius | 23 | 376 | 354 | - | – | |
| SUPERFAMILY | 53 | 374 | 322 | 1.85E-76 | ||
| Gene3D | 55 | 376 | 322 | 3.6E-94 | ||
| Pfam | 57 | 129 | 73 | 5.8E-9 | ||
| Pfam | 147 | 370 | 224 | 1.4E-48 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi1g1v0017300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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