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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0019800 |
| Transcript ID | LotjaGi1g1v0019800.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Altered inheritance of mitochondria protein 32; TAIR: AT4G26620.1 Sucrase/ferredoxin-like family protein; Swiss-Prot: sp|P08197|CYC6_CHLRE Cytochrome c6, chloroplastic; TrEMBL-Plants: tr|I1M6F2|I1M6F2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0019800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2466859..2470123) extracted from Lotus japonicus Gifu genome v1.2.
ACAATCTTGGCCTCTTTGATGTACATACTACATAGAGATATTCCTGATTTCAGTGAATGATTTTATTTCCTTGACCATCA TAATTAAATTTCCAAAAAAAAAAAAAAACATATCTGACGGTTGACAATTTTTTCTTTTCTTTTCAGGGGGTAGGAACTGT AGTTAATACATGTATCACCTTTGGCGTGTCATGGTGGCATCTTACCACCATTGCAGGCATGCATATGTGATGAGTCAAAG TTGCCTGCGGGTAGTCCACCATTGACTTGCTCTAATTATTCCGACAAATCCCCAAGCAAGGATGCTCACTGATTGCAGTT ATACCCGGAGCTATAGGGCATTTAGCCAATTTACACTGAGCATCAACATCCCGACCCCACCAAGCCCAGCCCTGGGACTG GAGTATATGGATGACCATGTTCATACAGGCTACTCCATCATCCATTGCGGCAGATAAGATGAATGTCTGCGAAGACCACC ATGACTTGTATCTAGGGTAAATATAGTATTTGAAAATCATTCAGATAAATCCCCAAGCAAGGATGCTCACTGATTGCACC TGTGATAAGACAGTACCACCTGCCAATATGAGCGGGACATTGATGTGCCTAATCCACTTGTGGTTGGGGAATTGTCTCGC TATGAGCCACACTAGCAATGTAAGGAGTACACCAATTACGGAGGGCCACAAGATGTACTCCTCACAGGGGTCAGATGAGT TTATCAGAAGATGAACAGATGAATAAACTAGAACAAAGGCTTCTCCTGAGTGGAATCAGAAATGTAGAAGAAAGCACTTG CCTAGGTTACTCTATGCAGCAGTTATGGCCAGGAAGAGCCATATGAAGAAGGAGGTACTGTTCCTCCACCTTGCCCTTTG GGTGTTGTTTCTACATATTTGGTGTTTTCAACTTGTGGGTTTGTTAACCTAGATGTTGGAAATTATACTAGAAGTCCCTG AATGGATGATGTAATGAGTGATCCACTTGCTATTGGTTGTTATAACAAGTTTTGGTGTTTGTGACATGTGGGTAAAGCAT ACAAAGTTTTCGTAGTAATCCCTAGATGATGGATACTATACTAATAGCATGTTTGGAAATTCATTGATTTTGTAGTCAAA ATCCGTTTTGGGGAGAAGTTTTGGAGTAGCCTTTGAGTTTCAGAGTTCATTCGGATAGAACATAAGCTGATCCAAACATA CTATGAGTGTAGTTTCCAGAGTTACTGTGATTTGGATTGTGTGCCTACTGCCAATGCAAACACTATAAAAGTTCTTAAAT GAGTTGTAAGCCGCATAATCACTTTTGAGTAGAAGCTACAAAGTGTGTGTGCCTTCTAGTTACTGTACTTTGGATTGTGT GCCTACCACCAATCCAAACACACTATAAAAGTTCTTAAATGAATGATGTAATGAGTGATCCACTTGAAATTGGTTGGTAT CACAAATTTTGTTAGTATAAGGTGGGTTTTAGCTTTATGATGTGTGTTAAGGGTGTTAATTGATTATATTGTGAAAAATG TTCAATCTTCATGTTTGTTTCTCTTACATTCACTTGGGCTGATTTTGCCTTGGGCTTATGCCTGGTGACTTGTTTCTTTT CTAGACTCGATTAACGATATATGAGGGTCATGATGGGACTGAAACATCTAACGGGGATGTCTTAATCTTTCCTGACATGA TCAGATACAGGTCAGTACGAGCTTTTGTTTTGCAACATCTGATTCCCTCATTCATTATGGTTCTCTGTAGTTTTCCCCTA CATTGTTGTCAACAACTAATTTTAGTGTGAAATTGCAGGAGGTTAACACATTTTGGTGTTGAGACATTTGTTGAAGAAGT TCTTGTGAAGGATGGAGAATGGCTTCCTGGGACTCCCGAATCTTTGAAAGGTTCATATATTTTTGTGTGTTCACATGCAT CCCGGGATCACAGATGTGGGGTTTGTGGACCTGTCTTGGTCAGTAGATTCAGGGAAGAGATAGAGCTGCATGGTCTACAG GGTAAAGTGGTTGTTAGCCCATGCTCTCATATTGGGGGACACAAGTATGCTGGAAACATCATTATATTTGGACCAACCAT GAATGGAGAAGTCACCGGGCACTGGTAAGGAGAAGATCCGCACGGTTGTTGAAATTCCTTTCTGTGACAGAATTTTCTGT TTATAATTTTAAATCTTGGAATACCATTATGCCATCGTTTATACAAATATTCTCTTCAACTTAAATATGCAGGAATTGAT ATGTTGATGAACCTTTATTGTTTCAACAACATATCATAAAAGGGGAGATCATAAACTCATTATGGAGGTAGTTAATGTTT TATAGTACTTTGTTTTCTTTACTATTTTGGCTACACAATTTTGATTTTTGCTGACTTGTTTTCATTTATATGTTTACAGA ATTTTGCCATCAGGGGTCAGATGGGTTTATCAGAAGATGAACAGATGAATAAACTAGAACAAAGGCTTCTGCTGAGTGGA ATCAGAAATGTAGAAGAAAGCACTGCAGTGTGTAGATCTCAAGATGATTTCGTGAGCTGCTGCCAATCAAATGGAATGAG CTACTGCCAAGAAAATGGAAACTCTTCCTACTGTACTCAAAATCATGTGCCAGCGGTGGAAAAGAGAAAAGAGCCTGATG TCATTGAGATGGAGGCGAAGCTCTCAGCTGATAGTAAGAGCAGTGAGACTGTGATTTCGCGGATCAACAACGGTAAAGGA GCTTCGTCGCGTAATTTCCATTCCATGACAACATGGCTAGATACCTGGGAGCAAGAAGACACTTATGCTGCTCTTGTTGT AGTCTTTGCTGCAGTGTCAGTTGCCATTGCCTATAACTCCTACAAACAATTGACATATGCTGAATCACCATTGAGAGTGT TATTTTGTGGGGTCAGATAACTTAACTTCTATTATGTTTGTATATCACTATTAACTTCATTTGTCTAATCCCGGTGCAGT TATTAAGATCATTCCTAACTGAACATGCAGGGAAACAAGGAAGGGCTTTATCATTAGTCTGGGTTTGTGTGCTTTTCTGC TGGTGGAATAGTGTTGCCTGGTGCACTTATAATTTGCTGGTTAGCTTAATCTGTAGTCTGTACATATAAGAAACCTTAGC CTCAGAATATTCAAGTTAAACATTGATAGTTTGTTTAGGTAGAATTTGATTTGTATCTTTTTTTCTTAATTTAATTTTAT GGAAAGCTTTGGTGTTCCTTGAATTGCTAGTTGGTGTGTTTGAATATCAGCTGACGTGAACTGTC
CDS sequence (LotjaGi1g1v0019800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTTATCAGAAGATGAACAGATGAATAAACTAGAACAAAGGCTTCTGCTGAGTGGAATCAGAAATGTAGAAGAAAG CACTGCAGTGTGTAGATCTCAAGATGATTTCGTGAGCTGCTGCCAATCAAATGGAATGAGCTACTGCCAAGAAAATGGAA ACTCTTCCTACTGTACTCAAAATCATGTGCCAGCGGTGGAAAAGAGAAAAGAGCCTGATGTCATTGAGATGGAGGCGAAG CTCTCAGCTGATAGTAAGAGCAGTGAGACTGTGATTTCGCGGATCAACAACGGTAAAGGAGCTTCGTCGCGTAATTTCCA TTCCATGACAACATGGCTAGATACCTGGGAGCAAGAAGACACTTATGCTGCTCTTGTTGTAGTCTTTGCTGCAGTGTCAG TTGCCATTGCCTATAACTCCTACAAACAATTGACATATGCTGAATCACCATTGAGAGTGTTATTTTGTGGGGTCAGATAA
Protein sequence (LotjaGi1g1v0019800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLSEDEQMNKLEQRLLLSGIRNVEESTAVCRSQDDFVSCCQSNGMSYCQENGNSSYCTQNHVPAVEKRKEPDVIEMEAK LSADSKSSETVISRINNGKGASSRNFHSMTTWLDTWEQEDTYAALVVVFAAVSVAIAYNSYKQLTYAESPLRVLFCGVR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 121 | 121 | - | – | |
| PANTHER | 1 | 145 | 145 | 2.7E-26 | – | |
| PANTHER | 1 | 145 | 145 | 2.7E-26 | ||
| Phobius | 122 | 141 | 20 | - | – | |
| Phobius | 142 | 159 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0019800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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