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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0019800 |
Transcript ID | LotjaGi1g1v0019800.2 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Altered inheritance of mitochondria protein 32; TAIR: AT4G26620.1 Sucrase/ferredoxin-like family protein; Swiss-Prot: sp|P08197|CYC6_CHLRE Cytochrome c6, chloroplastic; TrEMBL-Plants: tr|A0A1J7HCU8|A0A1J7HCU8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0019800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2467023..2470123) extracted from Lotus japonicus Gifu genome v1.2.
AATACATGTATCACCTTTGGCGTGTCATGGTGGCATCTTACCACCATTGCAGGCATGCATATGTGATGAGTCAAAGTTGC CTGCGGGTAGTCCACCATTGACTTGCTCTAATTATTCCGACAAATCCCCAAGCAAGGATGCTCACTGATTGCAGTTATAC CCGGAGCTATAGGGCATTTAGCCAATTTACACTGAGCATCAACATCCCGACCCCACCAAGCCCAGCCCTGGGACTGGAGT ATATGGATGACCATGTTCATACAGGCTACTCCATCATCCATTGCGGCAGATAAGATGAATGTCTGCGAAGACCACCATGA CTTGTATCTAGGGTAAATATAGTATTTGAAAATCATTCAGATAAATCCCCAAGCAAGGATGCTCACTGATTGCACCTGTG ATAAGACAGTACCACCTGCCAATATGAGCGGGACATTGATGTGCCTAATCCACTTGTGGTTGGGGAATTGTCTCGCTATG AGCCACACTAGCAATGTAAGGAGTACACCAATTACGGAGGGCCACAAGATGTACTCCTCACAGGGGTCAGATGAGTTTAT CAGAAGATGAACAGATGAATAAACTAGAACAAAGGCTTCTCCTGAGTGGAATCAGAAATGTAGAAGAAAGCACTTGCCTA GGTTACTCTATGCAGCAGTTATGGCCAGGAAGAGCCATATGAAGAAGGAGGTACTGTTCCTCCACCTTGCCCTTTGGGTG TTGTTTCTACATATTTGGTGTTTTCAACTTGTGGGTTTGTTAACCTAGATGTTGGAAATTATACTAGAAGTCCCTGAATG GATGATGTAATGAGTGATCCACTTGCTATTGGTTGTTATAACAAGTTTTGGTGTTTGTGACATGTGGGTAAAGCATACAA AGTTTTCGTAGTAATCCCTAGATGATGGATACTATACTAATAGCATGTTTGGAAATTCATTGATTTTGTAGTCAAAATCC GTTTTGGGGAGAAGTTTTGGAGTAGCCTTTGAGTTTCAGAGTTCATTCGGATAGAACATAAGCTGATCCAAACATACTAT GAGTGTAGTTTCCAGAGTTACTGTGATTTGGATTGTGTGCCTACTGCCAATGCAAACACTATAAAAGTTCTTAAATGAGT TGTAAGCCGCATAATCACTTTTGAGTAGAAGCTACAAAGTGTGTGTGCCTTCTAGTTACTGTACTTTGGATTGTGTGCCT ACCACCAATCCAAACACACTATAAAAGTTCTTAAATGAATGATGTAATGAGTGATCCACTTGAAATTGGTTGGTATCACA AATTTTGTTAGTATAAGGTGGGTTTTAGCTTTATGATGTGTGTTAAGGGTGTTAATTGATTATATTGTGAAAAATGTTCA ATCTTCATGTTTGTTTCTCTTACATTCACTTGGGCTGATTTTGCCTTGGGCTTATGCCTGGTGACTTGTTTCTTTTCTAG ACTCGATTAACGATATATGAGGGTCATGATGGGACTGAAACATCTAACGGGGATGTCTTAATCTTTCCTGACATGATCAG ATACAGGTCAGTACGAGCTTTTGTTTTGCAACATCTGATTCCCTCATTCATTATGGTTCTCTGTAGTTTTCCCCTACATT GTTGTCAACAACTAATTTTAGTGTGAAATTGCAGGAGGTTAACACATTTTGGTGTTGAGACATTTGTTGAAGAAGTTCTT GTGAAGGATGGAGAATGGCTTCCTGGGACTCCCGAATCTTTGAAAGGTTCATATATTTTTGTGTGTTCACATGCATCCCG GGATCACAGATGTGGGGTTTGTGGACCTGTCTTGGTCAGTAGATTCAGGGAAGAGATAGAGCTGCATGGTCTACAGGGTA AAGTGGTTGTTAGCCCATGCTCTCATATTGGGGGACACAAGTATGCTGGAAACATCATTATATTTGGACCAACCATGAAT GGAGAAGTCACCGGGCACTGGTAAGGAGAAGATCCGCACGGTTGTTGAAATTCCTTTCTGTGACAGAATTTTCTGTTTAT AATTTTAAATCTTGGAATACCATTATGCCATCGTTTATACAAATATTCTCTTCAACTTAAATATGCAGGAATTGATATGT TGATGAACCTTTATTGTTTCAACAACATATCATAAAAGGGGAGATCATAAACTCATTATGGAGGTAGTTAATGTTTTATA GTACTTTGTTTTCTTTACTATTTTGGCTACACAATTTTGATTTTTGCTGACTTGTTTTCATTTATATGTTTACAGAATTT TGCCATCAGGGGTCAGATGGGTTTATCAGAAGATGAACAGATGAATAAACTAGAACAAAGGCTTCTGCTGAGTGGAATCA GAAATGTAGAAGAAAGCACTGCAGTGTGTAGATCTCAAGATGATTTCGTGAGCTGCTGCCAATCAAATGGAATGAGCTAC TGCCAAGAAAATGGAAACTCTTCCTACTGTACTCAAAATCATGTGCCAGCGGTGGAAAAGAGAAAAGAGCCTGATGTCAT TGAGATGGAGGCGAAGCTCTCAGCTGATAGTAAGAGCAGTGAGACTGTGATTTCGCGGATCAACAACGGTAAAGGAGCTT CGTCGCGTAATTTCCATTCCATGACAACATGGCTAGATACCTGGGAGCAAGAAGACACTTATGCTGCTCTTGTTGTAGTC TTTGCTGCAGTGTCAGTTGCCATTGCCTATAACTCCTACAAACAATTGACATATGCTGAATCACCATTGAGAGTGTTATT TTGTGGGGTCAGATAACTTAACTTCTATTATGTTTGTATATCACTATTAACTTCATTTGTCTAATCCCGGTGCAGTTATT AAGATCATTCCTAACTGAACATGCAGGGAAACAAGGAAGGGCTTTATCATTAGTCTGGGTTTGTGTGCTTTTCTGCTGGT GGAATAGTGTTGCCTGGTGCACTTATAATTTGCTGGTTAGCTTAATCTGTAGTCTGTACATATAAGAAACCTTAGCCTCA GAATATTCAAGTTAAACATTGATAGTTTGTTTAGGTAGAATTTGATTTGTATCTTTTTTTCTTAATTTAATTTTATGGAA AGCTTTGGTGTTCCTTGAATTGCTAGTTGGTGTGTTTGAATATCAGCTGACGTGAACTGTC
CDS sequence (LotjaGi1g1v0019800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAATTTTGCCATCAGGGGTCAGATGGGTTTATCAGAAGATGAACAGATGAATAAACTAGAACAAAGGCTTCTGCT GAGTGGAATCAGAAATGTAGAAGAAAGCACTGCAGTGTGTAGATCTCAAGATGATTTCGTGAGCTGCTGCCAATCAAATG GAATGAGCTACTGCCAAGAAAATGGAAACTCTTCCTACTGTACTCAAAATCATGTGCCAGCGGTGGAAAAGAGAAAAGAG CCTGATGTCATTGAGATGGAGGCGAAGCTCTCAGCTGATAGTAAGAGCAGTGAGACTGTGATTTCGCGGATCAACAACGG TAAAGGAGCTTCGTCGCGTAATTTCCATTCCATGACAACATGGCTAGATACCTGGGAGCAAGAAGACACTTATGCTGCTC TTGTTGTAGTCTTTGCTGCAGTGTCAGTTGCCATTGCCTATAACTCCTACAAACAATTGACATATGCTGAATCACCATTG AGAGTGTTATTTTGTGGGGTCAGATAA
Protein sequence (LotjaGi1g1v0019800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENFAIRGQMGLSEDEQMNKLEQRLLLSGIRNVEESTAVCRSQDDFVSCCQSNGMSYCQENGNSSYCTQNHVPAVEKRKE PDVIEMEAKLSADSKSSETVISRINNGKGASSRNFHSMTTWLDTWEQEDTYAALVVVFAAVSVAIAYNSYKQLTYAESPL RVLFCGVR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 130 | 130 | - | – | |
PANTHER | 6 | 154 | 149 | 1.6E-29 | – | |
PANTHER | 6 | 154 | 149 | 1.6E-29 | ||
Phobius | 131 | 150 | 20 | - | – | |
Phobius | 151 | 168 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0019800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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