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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0019800 |
| Transcript ID | LotjaGi1g1v0019800.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Altered inheritance of mitochondria protein 32; TAIR: AT4G26620.1 Sucrase/ferredoxin-like family protein; Swiss-Prot: sp|O40626|NSP1_ROTH6 Non-structural protein 1; TrEMBL-Plants: tr|A0A1J7HCU8|A0A1J7HCU8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0019800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2467023..2470123) extracted from Lotus japonicus Gifu genome v1.2.
AATACATGTATCACCTTTGGCGTGTCATGGTGGCATCTTACCACCATTGCAGGCATGCATATGTGATGAGTCAAAGTTGC CTGCGGGTAGTCCACCATTGACTTGCTCTAATTATTCCGACAAATCCCCAAGCAAGGATGCTCACTGATTGCAGTTATAC CCGGAGCTATAGGGCATTTAGCCAATTTACACTGAGCATCAACATCCCGACCCCACCAAGCCCAGCCCTGGGACTGGAGT ATATGGATGACCATGTTCATACAGGCTACTCCATCATCCATTGCGGCAGATAAGATGAATGTCTGCGAAGACCACCATGA CTTGTATCTAGGGTAAATATAGTATTTGAAAATCATTCAGATAAATCCCCAAGCAAGGATGCTCACTGATTGCACCTGTG ATAAGACAGTACCACCTGCCAATATGAGCGGGACATTGATGTGCCTAATCCACTTGTGGTTGGGGAATTGTCTCGCTATG AGCCACACTAGCAATGTAAGGAGTACACCAATTACGGAGGGCCACAAGATGTACTCCTCACAGGGGTCAGATGAGTTTAT CAGAAGATGAACAGATGAATAAACTAGAACAAAGGCTTCTCCTGAGTGGAATCAGAAATGTAGAAGAAAGCACTTGCCTA GGTTACTCTATGCAGCAGTTATGGCCAGGAAGAGCCATATGAAGAAGGAGGTACTGTTCCTCCACCTTGCCCTTTGGGTG TTGTTTCTACATATTTGGTGTTTTCAACTTGTGGGTTTGTTAACCTAGATGTTGGAAATTATACTAGAAGTCCCTGAATG GATGATGTAATGAGTGATCCACTTGCTATTGGTTGTTATAACAAGTTTTGGTGTTTGTGACATGTGGGTAAAGCATACAA AGTTTTCGTAGTAATCCCTAGATGATGGATACTATACTAATAGCATGTTTGGAAATTCATTGATTTTGTAGTCAAAATCC GTTTTGGGGAGAAGTTTTGGAGTAGCCTTTGAGTTTCAGAGTTCATTCGGATAGAACATAAGCTGATCCAAACATACTAT GAGTGTAGTTTCCAGAGTTACTGTGATTTGGATTGTGTGCCTACTGCCAATGCAAACACTATAAAAGTTCTTAAATGAGT TGTAAGCCGCATAATCACTTTTGAGTAGAAGCTACAAAGTGTGTGTGCCTTCTAGTTACTGTACTTTGGATTGTGTGCCT ACCACCAATCCAAACACACTATAAAAGTTCTTAAATGAATGATGTAATGAGTGATCCACTTGAAATTGGTTGGTATCACA AATTTTGTTAGTATAAGGTGGGTTTTAGCTTTATGATGTGTGTTAAGGGTGTTAATTGATTATATTGTGAAAAATGTTCA ATCTTCATGTTTGTTTCTCTTACATTCACTTGGGCTGATTTTGCCTTGGGCTTATGCCTGGTGACTTGTTTCTTTTCTAG ACTCGATTAACGATATATGAGGGTCATGATGGGACTGAAACATCTAACGGGGATGTCTTAATCTTTCCTGACATGATCAG ATACAGGTCAGTACGAGCTTTTGTTTTGCAACATCTGATTCCCTCATTCATTATGGTTCTCTGTAGTTTTCCCCTACATT GTTGTCAACAACTAATTTTAGTGTGAAATTGCAGGAGGTTAACACATTTTGGTGTTGAGACATTTGTTGAAGAAGTTCTT GTGAAGGATGGAGAATGGCTTCCTGGGACTCCCGAATCTTTGAAAGGTTCATATATTTTTGTGTGTTCACATGCATCCCG GGATCACAGATGTGGGGTTTGTGGACCTGTCTTGGTCAGTAGATTCAGGGAAGAGATAGAGCTGCATGGTCTACAGGGTA AAGTGGTTGTTAGCCCATGCTCTCATATTGGGGGACACAAGTATGCTGGAAACATCATTATATTTGGACCAACCATGAAT GGAGAAGTCACCGGGCACTGGTAAGGAGAAGATCCGCACGGTTGTTGAAATTCCTTTCTGTGACAGAATTTTCTGTTTAT AATTTTAAATCTTGGAATACCATTATGCCATCGTTTATACAAATATTCTCTTCAACTTAAATATGCAGGAATTGATATGT TGATGAACCTTTATTGTTTCAACAACATATCATAAAAGGGGAGATCATAAACTCATTATGGAGGTAGTTAATGTTTTATA GTACTTTGTTTTCTTTACTATTTTGGCTACACAATTTTGATTTTTGCTGACTTGTTTTCATTTATATGTTTACAGAATTT TGCCATCAGGGGTCAGATGGGTTTATCAGAAGATGAACAGATGAATAAACTAGAACAAAGGCTTCTGCTGAGTGGAATCA GAAATGTAGAAGAAAGCACTGCAGTGTGTAGATCTCAAGATGATTTCGTGAGCTGCTGCCAATCAAATGGAATGAGCTAC TGCCAAGAAAATGGAAACTCTTCCTACTGTACTCAAAATCATGTGCCAGCGGTGGAAAAGAGAAAAGAGCCTGATGTCAT TGAGATGGAGGCGAAGCTCTCAGCTGATAGTAAGAGCAGTGAGACTGTGATTTCGCGGATCAACAACGGTAAAGGAGCTT CGTCGCGTAATTTCCATTCCATGACAACATGGCTAGATACCTGGGAGCAAGAAGACACTTATGCTGCTCTTGTTGTAGTC TTTGCTGCAGTGTCAGTTGCCATTGCCTATAACTCCTACAAACAATTGACATATGCTGAATCACCATTGAGAGTGTTATT TTGTGGGGTCAGATAACTTAACTTCTATTATGTTTGTATATCACTATTAACTTCATTTGTCTAATCCCGGTGCAGTTATT AAGATCATTCCTAACTGAACATGCAGGGAAACAAGGAAGGGCTTTATCATTAGTCTGGGTTTGTGTGCTTTTCTGCTGGT GGAATAGTGTTGCCTGGTGCACTTATAATTTGCTGGTTAGCTTAATCTGTAGTCTGTACATATAAGAAACCTTAGCCTCA GAATATTCAAGTTAAACATTGATAGTTTGTTTAGGTAGAATTTGATTTGTATCTTTTTTTCTTAATTTAATTTTATGGAA AGCTTTGGTGTTCCTTGAATTGCTAGTTGGTGTGTTTGAATATCAGCTGACGTGAACTGTC
CDS sequence (LotjaGi1g1v0019800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAATTTTGCCATCAGGGGTCAGATGGGTTTATCAGAAGATGAACAGATGAATAAACTAGAACAAAGGCTTCTGCT GAGTGGAATCAGAAATGTAGAAGAAAGCACTGCAGTGTGTAGATCTCAAGATGATTTCGTGAGCTGCTGCCAATCAAATG GAATGAGCTACTGCCAAGAAAATGGAAACTCTTCCTACTGTACTCAAAATCATGTGCCAGCGGTGGAAAAGAGAAAAGAG CCTGATGTCATTGAGATGGAGGCGAAGCTCTCAGCTGATAGTAAGAGCAGTGAGACTGTGATTTCGCGGATCAACAACGG TAAAGGAGCTTCGTCGCGTAATTTCCATTCCATGACAACATGGCTAGATACCTGGGAGCAAGAAGACACTTATGCTGCTC TTGTTGTAGTCTTTGCTGCAGTGTCAGTTGCCATTGCCTATAACTCCTACAAACAATTGACATATGCTGAATCACCATTG AGAGTGTTATTTTGTGGGGGAAACAAGGAAGGGCTTTATCATTAG
Protein sequence (LotjaGi1g1v0019800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENFAIRGQMGLSEDEQMNKLEQRLLLSGIRNVEESTAVCRSQDDFVSCCQSNGMSYCQENGNSSYCTQNHVPAVEKRKE PDVIEMEAKLSADSKSSETVISRINNGKGASSRNFHSMTTWLDTWEQEDTYAALVVVFAAVSVAIAYNSYKQLTYAESPL RVLFCGGNKEGLYH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 130 | 130 | - | – | |
| PANTHER | 6 | 154 | 149 | 1.8E-29 | – | |
| PANTHER | 6 | 154 | 149 | 1.8E-29 | ||
| Phobius | 131 | 150 | 20 | - | – | |
| Phobius | 151 | 174 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0019800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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