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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0021200 |
| Transcript ID | LotjaGi1g1v0021200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein, putative; TAIR: AT3G07810.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1; TrEMBL-Plants: tr|A0A0B2QW64|A0A0B2QW64_GLYSO RNA-binding protein Musashi like Rbp6; Found in the gene: LotjaGi1g1v0021200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2610119..2615058) extracted from Lotus japonicus Gifu genome v1.2.
ATTTCTTAAAACATCAAAACAAAAACAAAAAAACATGTTGTGATCTGTTAGCTTGTCTGCACCAGAGGATTTGCAGTGTT GTTGTGTTCTCTCTCTATCTTTGCTTGAAATTCCATTTCTTTTGATTTAATTAAGGGTAGTGGAAGCAAGCAACAAGATA AAAAGGCAAGCAAGAGAGAGAGAGATAGAGAGAGGGGATGAGACCACATCCTCTGTTTTCATTCTCCCTGCCATTCAAAT TTTTCACATAACCTCTCATTATTATTGTTGTTATTGTTTTTTTATTTTTTGCTTCTGTTTTCCATCACCTACCATTCATT TTGATTCTTGAATGGTGAATTTTTCATCTGGGTTGTTCCAATTTTTGATTTCCTTCTCCTTTGATCTCTAATCTCTACTC TGAATTTCTTCTCTGATCCTATCTTTCTTTGCTGGATTGCTGGATTGGTTAAGTTTCTGATTGGTTCTCTGAAGATCCCA TTCTCTTAGATCGAATTTCACAAACCCCACTTCGTATAATTCAGAAGCATCAACTGGGTTCTGGCTGAATTTCAATATAA GGTGACCCTTTTAGCAGATTTATCTAATCTGCATTTCTGATCGCTTTACTTTGCTTCTGCTTATCAAAGATTGAATTTTT ATGTAGATTGAGCTCAATTGTACATTAACCAATTACCTATGCATTTAGATTGGTTCAGGGACTTAAATTCTGGCCATCAC TGAATAATTTAGATTCTTTGTGTTGAGATATGCATGTTTTGTTGGTGTTGATGTTGGTTTTGGTTTTGATTTGGCATGAG AATTTTGACTTAAAGTGAGTTGTTTGTCTGAATCTGTTGAATGGAAATAGCTTTTGATGGTTAATTTGGCCTGGTTGGTT ACATGACAGATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGAATTTCCTGGGATACTGATGAGGAACGTCTCAAAGA ACATTTTGGGAAATATGGGGAGGTGATAGAGGCTGTGATCATGCGAGATCGCACCACAGGCCGTGCTCGAGGCTTCGGTT TTGTTGTTTTTGCTGATCCTGCTGTTGCAGAACGAGTCATTGTGGATAAGCACATAATTGATGGCCGAACGGTGAGTTGT TTCATCGTAGATGCACTAGGCATTGTTTTGATGCATGTTACTTTGCTAAGCTGTGATGCCACTTTGCTAAATTTTGGTTT CTGATAGAGATAATCATGTCCCTACTTATGTTTTCCACTTTGTTGATGTGATCTAAATGATGCTCACTTTTTGCTCCATT GAGCATGTTAGAAACATAATCTAAAGTCATTCATGTGTCTTCCCCTGAATAGCTTAAGCTTATGGGGTAGTTAGTTCATG ACAAAGCTGGAGATTATCAACTTTTTGTGCATGTGTTTTTATATGTACATTGTATCAAACTTGACCTTTGTTTTGCTTAT AGGATCGGAAACTGGAACTGACTTGCAGATTTTGATCTTTGTGTTTGATGGTTAATGTGAATCTGTTCAATGAAAAAAGT ATTTGATTGTTAAGCTTAGCATTTTTTTGTGCATGGGTTTTTATATGTACATTGTGTCAAGCTTGACCTTTTTTTTGCTT ATAGGATAGGAAAGTGGAAATGACTTGTAGATTTTGATCTTTGTGTGTTGTGATCTTAATTTCCAGGTTGAAGCCAAGAA GGCTGTTCCTCGGGATGATCAGAACACCTTAAACAGACAGTCCGGTAGCGTCCATGGATCTCCTGGTCCCGGACGCACCA AGAAGATTTTTGTTGGAGGCTTACCCTCAACAATCACAGAAAGTGATTTTAAGAACTATTTTGATCAGTTTGGTACAATT ACCGATGTTGTAGTAATGTATGACCACAACACCCAGAGACCAAGAGGTTTTGGCTTCATCACTTATGATTCAGAAGAAGC TGTAGACAGAGTTCTTTTTAAGACATTTCATGAACTCAACGGAAAGATGGTTGAGGTCAAGCGAGCAGTTCCCAAAGAGC TTTCCCCCGGACCGATTCGGAGCCCATTGAAAGGATCATATAACTATGGTTTGAATAGGGCCAGTAGCTACCTAAACAGC TTTGCCCAGGGCTTTAATATGAACCCGGTTGGAGGCTTGGGAGTCAGGATGGATGGTAGGTTTAGTCTTAATCCACTTAC TACTAGTAGAGGTGGATTAACCCCATTTGGCTCCAGTGGTTATGGAATGGGAGTGAATTTGGATTCAGGATTGAATTTGA ACCCAAGCTATGGAGGAACTTCCAATTATGGGGGTAATCTAGGATACAGTCGGATAAGTCCTTTCTACAACAGCAACTCT AGCAGATATACCACTCCTATCGGCTACAGCGGGGGCAATGTGAGAAGTGATTCGCTTATGAACTCTCCTTCTCGGAATGT TTGGGGAAATGGGGATCTAAATAGTACTTCCAATAACCAAGCCAGCCCTGGTGGTGCTTACTTGGGATCTGGAAGTGGGG CTTTTGGAGTTTCAATTGGAAATAGCGGCGCGAGTTGGGGTCAATCTGTTCCAAACCAAGGTGGAGGGGCTGCTTCCAGC TATAATGCTTGGAATAATGCTTATGAAGGTGGAGGTAGCAGCATTGGATTAGGAGGGGGAGGGTATGGAAGGAACAGCCC AAGCGTGCCTCAATCCTCAACATTTACTGCACCAACTGGCGGTTATGAAGGATCCTATGGGGACTTGTACCGCAATGGTT CATTTTACAGTGACTCAACTTGGCGGTCCGGTGCTTCTGAAATTGATGGCTCGGGTTCGTTTGGTTATGGACTTGGTGGT ATAGCTTCAGAAGATCTAGTGAAGAGTTCAGATGATTTGAATGGAAACTACAATGTAGCAAGTAGACAATCTAATAGAGG TAAGATCTTCAGAGACATTATTTTCTCCTGTAGAAATTATGTCATAAGTGTGCAATTATGAATCTTTGTTGTTTGCTTGT TTCCATTTTTTAACAAAACTAGTTGTGCATTTTTAAACTTTTTTATGTTTCAGATAAATTAGTCTGAAGGAAGTTGAAAT GTAAATCTTTTTTATTTTATTTTCTAGTGTGCTGTTACATTTGTCTTTAAGCCTAAAATCCGCATGTTTGTAAATCTGAT ATGGATAAAGATACCATAAATAGCATTGTTCATGTCTTCTTTTAATTACTATCAAAAACTCTAGGTTCCTCATTTCTCAT CCCCGGGTCCCTAAATTCTTGATATATTTGTTGTAATTCGTACTACAGTCTAAAAGGTTATTAGCTTCCTATACTTAAAA GATGGGTTTCTTGATTACTTTCATTTAAAGATATTGGAATTTGATGCTTCATGTGAGCTCATATAACCTGCAAGATGCTA AAGTTGTGGACATAGATAACATATTTCTATCTCATGTTGAATGTGTAGAATTCTTTTTTTCATGAATTGAAAATGAGTTG TTCTTGACTTCTTGTTGAAGATACTTTCTCTCTTTGTAAGGGTTGAAATTTGAGCATAATTCAGTAATGATACTTAGACA CTCAAATAGTGCAGACACCCCATTTTTTCTATCTATCTCTCTTCTTATCACACCACTTCATATATCACATCTATTATTTC TATCTCTTCTCGTCCCAAAGGGTTAGCTCAAGTGGTAAGAACTAGGGGACATAAGGGTTGGGTGGGATGAAGGGTGAAGG GTTCGAACCCTGAGGAGGGACTAATTTACTAACATTACTAACAACTAACATTTGCCTATTAAAAAAAAACTTCTATCTCT TCTCTTTATTCCTCTCCCTCTGGGCGTCTTCTGGATGTCTTCACTATATAGATGTATACGAATCATTTTCCTGTCGAATA CATTTTTTAGATGTTCTGATTTAACTTAGTTGTATATTACTCATATTCTTTTGCTGTATCTTCTCTTGCTTCAGGTATTG CTGCTTAGGAGATATGGTAATCGGATATAGCATGGTAACTGTAGATCAAGGGATACTGTTAAAGTAATGAGGTATTGTGA ATTCATACATCTCCATCACTTGAGAGAAATCAGCTCATAAGGAAATTCAGCATATATAGCTAACGGTGTTCTTTCATTTG AACTATAGATAAGCTAAATCAGTTACAAGGGATTTTGTATAAGGCTTGGGATTTTTTTTGTCCCCATTTTGAATTTTCAA GACTTAGCTCCTTTCATGGATCAGATTGCGGGATATGCTCAAGGAAGATTGGTTCCAATAGGGTAGTACGGTCATTAGTA TCTTTAGTGCATGTTTGGAAATTCTTCTACAATTAATTCTAAAGTCATAATCAATTCTGTCAAAACTTCTAGGTTTCAGA ATTGATTTTGAGGAAAAAGAAGTTGTTCCAAACATGCGTAATGATAGTGTATGAATTGTTCTTTTTTCTTGTGTCATTGT AATGTCTGGCAAAAAACTGCTTGTTCTTGTCACCATCTTTTTTATGGGACATGTTTCTAATCAAATTGTGAGGTTCAGTT TGATTTATGAGGTTTGAAATATGAGAGGGGCATCCATCTAGGATCCCCATTAAATAATGAAGTTACTAGACAGATATTAT TTTTCTTTTTGTTTGACTTTTTTATATAGATGATCTTTTTTCACCCTTCAAAACTTGTTCCTGCATACTCTGTGTATATG CTTGGCATTCTTTGTTGGTTTAGCTACTTGGTTGGTTTCCCCGTTTGTACGTCTAAGGCACGTTTACTCTGAAGCTAAGA GCTCATTTAGTTTCCGCAAACGAGAAAATGAACATCTTTACATATAACATTAAAACAAGAATTTGTTATGTTGACACTGA AAACTCGGATAAGTGTTGAGTTCAATGAAAATTTCTTTATACATTAAGATTTATATGGTTTTAAAGCATTTTACATGCTA GCCTCTTATTGCATATATGATCCAAATTTGATTGGTTGAAATAAGGGCACACGTTTTAAG
CDS sequence (LotjaGi1g1v0021200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGAATTTCCTGGGATACTGATGAGGAACGTCTCAAAGAACATTTTGG GAAATATGGGGAGGTGATAGAGGCTGTGATCATGCGAGATCGCACCACAGGCCGTGCTCGAGGCTTCGGTTTTGTTGTTT TTGCTGATCCTGCTGTTGCAGAACGAGTCATTGTGGATAAGCACATAATTGATGGCCGAACGGTTGAAGCCAAGAAGGCT GTTCCTCGGGATGATCAGAACACCTTAAACAGACAGTCCGGTAGCGTCCATGGATCTCCTGGTCCCGGACGCACCAAGAA GATTTTTGTTGGAGGCTTACCCTCAACAATCACAGAAAGTGATTTTAAGAACTATTTTGATCAGTTTGGTACAATTACCG ATGTTGTAGTAATGTATGACCACAACACCCAGAGACCAAGAGGTTTTGGCTTCATCACTTATGATTCAGAAGAAGCTGTA GACAGAGTTCTTTTTAAGACATTTCATGAACTCAACGGAAAGATGGTTGAGGTCAAGCGAGCAGTTCCCAAAGAGCTTTC CCCCGGACCGATTCGGAGCCCATTGAAAGGATCATATAACTATGGTTTGAATAGGGCCAGTAGCTACCTAAACAGCTTTG CCCAGGGCTTTAATATGAACCCGGTTGGAGGCTTGGGAGTCAGGATGGATGGTAGGTTTAGTCTTAATCCACTTACTACT AGTAGAGGTGGATTAACCCCATTTGGCTCCAGTGGTTATGGAATGGGAGTGAATTTGGATTCAGGATTGAATTTGAACCC AAGCTATGGAGGAACTTCCAATTATGGGGGTAATCTAGGATACAGTCGGATAAGTCCTTTCTACAACAGCAACTCTAGCA GATATACCACTCCTATCGGCTACAGCGGGGGCAATGTGAGAAGTGATTCGCTTATGAACTCTCCTTCTCGGAATGTTTGG GGAAATGGGGATCTAAATAGTACTTCCAATAACCAAGCCAGCCCTGGTGGTGCTTACTTGGGATCTGGAAGTGGGGCTTT TGGAGTTTCAATTGGAAATAGCGGCGCGAGTTGGGGTCAATCTGTTCCAAACCAAGGTGGAGGGGCTGCTTCCAGCTATA ATGCTTGGAATAATGCTTATGAAGGTGGAGGTAGCAGCATTGGATTAGGAGGGGGAGGGTATGGAAGGAACAGCCCAAGC GTGCCTCAATCCTCAACATTTACTGCACCAACTGGCGGTTATGAAGGATCCTATGGGGACTTGTACCGCAATGGTTCATT TTACAGTGACTCAACTTGGCGGTCCGGTGCTTCTGAAATTGATGGCTCGGGTTCGTTTGGTTATGGACTTGGTGGTATAG CTTCAGAAGATCTAGTGAAGAGTTCAGATGATTTGAATGGAAACTACAATGTAGCAAGTAGACAATCTAATAGAGGTATT GCTGCTTAG
Protein sequence (LotjaGi1g1v0021200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESDLGKLFIGGISWDTDEERLKEHFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKA VPRDDQNTLNRQSGSVHGSPGPGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV DRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLKGSYNYGLNRASSYLNSFAQGFNMNPVGGLGVRMDGRFSLNPLTT SRGGLTPFGSSGYGMGVNLDSGLNLNPSYGGTSNYGGNLGYSRISPFYNSNSSRYTTPIGYSGGNVRSDSLMNSPSRNVW GNGDLNSTSNNQASPGGAYLGSGSGAFGVSIGNSGASWGQSVPNQGGGAASSYNAWNNAYEGGGSSIGLGGGGYGRNSPS VPQSSTFTAPTGGYEGSYGDLYRNGSFYSDSTWRSGASEIDGSGSFGYGLGGIASEDLVKSSDDLNGNYNVASRQSNRGI AA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 92 | 91 | 1.7E-25 | ||
| SUPERFAMILY | 4 | 104 | 101 | 7.12E-28 | ||
| ProSiteProfiles | 6 | 82 | 77 | 17.745 | ||
| SMART | 7 | 78 | 72 | 1.1E-23 | ||
| Pfam | 8 | 75 | 68 | 9.7E-17 | ||
| CDD | 8 | 78 | 71 | 1.20653E-38 | – | |
| PANTHER | 11 | 344 | 334 | 1.5E-152 | – | |
| PANTHER | 11 | 344 | 334 | 1.5E-152 | – | |
| MobiDBLite | 80 | 105 | 26 | - | – | |
| Gene3D | 103 | 181 | 79 | 1.9E-25 | ||
| CDD | 104 | 183 | 80 | 2.81406E-49 | ||
| SUPERFAMILY | 105 | 280 | 176 | 3.09E-26 | ||
| ProSiteProfiles | 106 | 183 | 78 | 17.933 | ||
| SMART | 107 | 179 | 73 | 2.1E-23 | ||
| Pfam | 108 | 164 | 57 | 7.6E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi1g1v0021200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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