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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0021500 |
| Transcript ID | LotjaGi1g1v0021500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial import inner membrane translocase subunit TIM22; TAIR: AT5G55510.1 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein; Swiss-Prot: sp|Q6NKU9|TI223_ARATH Mitochondrial import inner membrane translocase subunit TIM22-3; TrEMBL-Plants: tr|I3T6N2|I3T6N2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0021500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2653303..2656640) extracted from Lotus japonicus Gifu genome v1.2.
AGTTTTTGAGTTGGGCCTAGAGTGAGTGGAGTGAGTGGCATTGTTGGGTGAAAAAAGGGTAAAAGCGGGAGAGCAACCAA AACGACGTCATTTAGGAACTCTGCAAGCAGCAAAAGATAACATAGAGAGAGCGCACACACACACACGAAGGTAACGACGC TCCAATAACACACACCTCAGCTCAGCCATGGCCACGGCGGATTCCGACGACATCACTCAGCCTCCGCCTCAGGTTTCTTC CAATCCTCCGACCAACGCCCTTGTCCCTGCTACTCCTGCCGTCTGCCTAGTCCGCTTCGCCACCGACTCTGCCGGCGGCG CTTTCATGGGCTCCGTCTTCGGATACGGTCCTTCTCTTCTCTTCATTTCGCATCTCTTACTAGTTACCCTTAATTATGCC TAATTTTATTTCGTGCTTTTCAATCGAAGATTTAGTGTTTGTGAGCTTGTGTTGTGGAATGTTCATACACTCATTCAATG CTTGAATTGCTGGATCTTTTCGTTTTGAGAGGAGGAAAATGATTTTCCTCATTGATTTCAGTTACCAATGCTGGTTTTAG CTATGAACAGGGATGGGAGTAACTAGCTAATAACTTTTTCTCCAGAAATTTCCTGTAACTAACTTATAACTGACTTGTAC TATTATCAGTGGTATTAAATTGAGTGAAGAGGCTCTGAATCAAGTTACATCAGTTGTTGCAGTGTGATTAATGTCTAGTA GTTTTTATCAGAAATGAATTGGAGAAGTGAAAGTGCTTCTTCTTCTTCATTGTTTTGGTTTTTGAATTGTTGGTTGGTCT GTTTTAGGGTATGTATTAGGGAAAGAAGCAGGTTTGCGACACCGAAAATATGTTTGGGAAGTGATAAGAAGATGATACCT ACTTAGTTTAGTGTAATTGAGAACGAGGCAATGGGTTTGGGTTGGTGGTTTGCAGGAGCAAGTTCATGGTGTTATGTTAC CTGTGTTGCTAATGGCAGATGGCAGATTATGGTAGAATATCGGCTATGGCGGCTTGCTAGAATTCCGCCATGGCGGATAT TTGACTACACTGTATGTCACATTACATGGAACAATGTTAGCTTTCCGGTTAAGTTCTCTCATAATATGCATGACTAATAT GTTGATTCAATGTGTATCTAAGTGAAAAATAGAAAGCTGGCTAAAGGCCATCTTTGAGAAATTTGACTCTTGATAGTGTA ATTGTCGGTCAATTTTTCTGACTTTGCTTAAGGGTGCTTGTAATATGTGTTTTCAGGTGCTGGGCTATTTAAGAAAAAAG GTTTTAAAGGATCCTTTGTTGAAGCGGGGTCTTATGCAAAGGTACATTGGGAATCTCACTAGCTTTTTTCCCTGGCTGTT TTATGTTGCCTACTTGGTTAATATTTGGATGTATGGCCTGTTTTCTATGTTTTTCATTTAGCTCGTAAATAATCTTTCGG TAGACTAGCTCTTAGGGGCAGACCTCCCATAAACCAAGGTTAATGTGAGGCGCCAGTGAGTTTTCTGCTGTTAATTGATG TTAATAGTATAGTTAGTGGGATGTTAGTATAAATAAGAGAGGTTAAGTCAGTGTTAATCAGTTTTAGTGAGGTGGTTAGT TGGAGGAACTGAATTGCTGTCAATTCAGTTACGTTTCCCTTTCAAGAATTTGTACTTTCCTTTTCTACCAATAATACACT GTTTATACCAGAATCACACGGGCTCTATAGCTGTTCTTTCCTGAAATTCGTTTCTCTTCCTATTCTGAAGAACCAGTGCT AACATCTTTTTTCATTACCTCTTCAGACATTTGCAGTTTTGTCTGGAGTTCACAGTTTGGTTGTTTGCATCTTGAAAAGA CTTCGAGGAAAGGATGATGGTATAAAACATTTATCATGAAAAGTTACTTCTGCTTTTTACTGTTTTCCCACTGATAATGC GACGAATTTTATATCTGCAGTCATTAATGCTGGGGTAGCTGGATGTTGCACTGGTCTAGCTCTAAGTTTTCCAGGTATCT TCATTTTCCCTTTAAATAAATGGATGAAATTTTGCATTTTTTAAAAACTTGTCACACCTTGTTGGACTTTTTTTTTGTGA TAAGCACACCTTGTTGGACTAATAAGAAAGCAGGATAATGTGCTTGCCAATGTGGCCTAATTATCTTATGTGCTAATACA CTGACGAAATTTACTCGTAGTTGAGGTGGGAAAAAAAAAACCACCACCCCCCAAAAGAAAAAGGAAGTAAAATTTTTGCT AATTCAGAAGGCCTCCTGATCACTAATATTGTTAAATTTCAATACATTGTTTGGCTAAATATGCATGTAAAATTGTAAAT TTCATGTTTTGTACTTGTTATGTTATTGTGACTAATCTTTAAGGGTGTTCTCCAGGTGCACCACAAGCTCTTCTGCAGAG CTGCCTCACTTTTGGGGCTTTTTCTTTCGTTATGGAAGGGTTAAACAAGCAGCAGCCAGCACTTGCACTTCCCATGTCCT GGAAAACAACTGCGCTACATAATGCACGTCCTCCCTTTGCACTCCCCCTGCAACTCCCACTTCCCGATGAAATGAAAGAA GCCTTTTCCTCTTTCTGCAAGTCTTTGAAAAAGCGCAACAAGGGAGCTTTTCCTACATCCCAATAAGTAATCAGGGTATC TTGGTTTTGTAGCATCATGTTCATGTAGATAAGACGTGCACCCTTCTTTGACTTTATTTAGGGCTTCCTTGTAGCTTTTG TCAACATTTCTTTTAGAAGAAGTTGAGGGTGACAAACAATTGTCCATGGAGATAGGTTGTTACATCATGTTACTGAGTTC CAATCTAACGCCATCTTGGTTCTATTCTATCCTGTTCTTTCTTGGTGGATTGTTGGAACTTGAAAGGCATACGGTGTGAT GATTGATTGAGCTTGAGTGCTTGACTTATGCAGTTATTATCCAAAGCACATTAGTATGAAATGGCGGCAATTTCTGTTTA ATGCGATTGCAACCTATCTTAGATTATGAGCAAATGTAGAAACTATTTCACAATGGGTGGGCGCGCTCAAAGATTCTGAC ATCAAAAGCCTGTGTTATGACCATGAAAGATTCTTATGCCCCTTGCTTCTGCAAATATATTTTAATGAATGATGCTAAAG TTATATGTTATTTAAAACTACAACCTTTTGAAATTCTTAACACTTGCCATATAGCATGAAATCTAAATGATTTTTTCATG CAACTTCCAAGGTTTTTTATGTTTCTTTCGCCATTCTTGTCTGTGTTTTGTTATTTGGGATTGGTGTGGTTAAGTTCTTT TGTATCTTTCTTGAGAGGGTTGGTCTCATGGTACTATTTCTCGTTCAATAAATTCTTT
CDS sequence (LotjaGi1g1v0021500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACGGCGGATTCCGACGACATCACTCAGCCTCCGCCTCAGGTTTCTTCCAATCCTCCGACCAACGCCCTTGTCCC TGCTACTCCTGCCGTCTGCCTAGTCCGCTTCGCCACCGACTCTGCCGGCGGCGCTTTCATGGGCTCCGTCTTCGGATACG GTGCTGGGCTATTTAAGAAAAAAGGTTTTAAAGGATCCTTTGTTGAAGCGGGGTCTTATGCAAAGACATTTGCAGTTTTG TCTGGAGTTCACAGTTTGGTTGTTTGCATCTTGAAAAGACTTCGAGGAAAGGATGATGTCATTAATGCTGGGGTAGCTGG ATGTTGCACTGGTCTAGCTCTAAGTTTTCCAGGTGCACCACAAGCTCTTCTGCAGAGCTGCCTCACTTTTGGGGCTTTTT CTTTCGTTATGGAAGGGTTAAACAAGCAGCAGCCAGCACTTGCACTTCCCATGTCCTGGAAAACAACTGCGCTACATAAT GCACGTCCTCCCTTTGCACTCCCCCTGCAACTCCCACTTCCCGATGAAATGAAAGAAGCCTTTTCCTCTTTCTGCAAGTC TTTGAAAAAGCGCAACAAGGGAGCTTTTCCTACATCCCAATAA
Protein sequence (LotjaGi1g1v0021500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATADSDDITQPPPQVSSNPPTNALVPATPAVCLVRFATDSAGGAFMGSVFGYGAGLFKKKGFKGSFVEAGSYAKTFAVL SGVHSLVVCILKRLRGKDDVINAGVAGCCTGLALSFPGAPQALLQSCLTFGAFSFVMEGLNKQQPALALPMSWKTTALHN ARPPFALPLQLPLPDEMKEAFSSFCKSLKKRNKGAFPTSQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 23 | 23 | - | – | |
| PANTHER | 17 | 190 | 174 | 2.1E-96 | – | |
| PANTHER | 17 | 190 | 174 | 2.1E-96 | ||
| Pfam | 36 | 134 | 99 | 8.3E-14 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | TIM22 mitochondrial import inner membrane insertion complex | A multi-subunit complex embedded in the mitochondrial inner membrane that mediates the inner membrane insertion of multi-transmembrane spanning proteins that contain internal targeting elements. In yeast cells, TIM22 is a 300-kDa complex, consisting of four membrane integral subunits, Tim22, Tim54, Tim18 and Sdh3, and a peripheral chaperone complex consisting of the small TIM proteins, Tim9-Tim10-Tim12. | ||
| Biological process | Protein import into mitochondrial inner membrane | The process comprising the import of proteins into the mitochondrion from outside the organelle and their insertion into the mitochondrial inner membrane. The translocase of the outer membrane complex mediates the passage of these proteins across the outer membrane, after which they are guided by either of two inner membrane translocase complexes into their final destination in the inner membrane. |
Expression pattern of LotjaGi1g1v0021500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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