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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0022300 |
| Transcript ID | LotjaGi1g1v0022300.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fimbrin, putative; TAIR: AT4G26700.1 fimbrin 1; Swiss-Prot: sp|Q7G188|FIMB1_ARATH Fimbrin-1; TrEMBL-Plants: tr|K7KBJ8|K7KBJ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0022300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2748024..2753808) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCAAAATTTGAGGGTGTTATTGTCTCCGATCAATGGCTTCATAGCCAGTTTACGCAGGTTGAACTTCGCGCCCTGAA ATCAAAAGTAAGTTCGTTTTTTTGTTCCTTACATGGGACATTTTGGTCCAATTCTGTTAATTGCATGTTTGGAAACTCTT CTATAATTGATTCTAATGCCAAAATCAATTCTGGGGGAAGCTTCTATGAGTAGCTTCTTATGTGTCAGAATTGATTATGA GGAAGTAGAAGTTGATCCATACATATATCAAGTTTGATGCCTTACATGCTTTTGTATTTTTGGCTAATGTGGCCCATCAT TCTGGTGTTGTAGTTTGTCTCTTTGAAGAATCAGAATGGTAAAGTTACATTAGGAGATTTGCCACCTCTAATGGTGAAGC TCAAGGCATTCAGAGACATGTACAAGGAGGATGAGATTAAGGGGATTTTGGGTGATTCAGGCACTGACTTTACCATTGAT ATTGATTTTGAAGCCTTCTTAAGGGTGAGTAATTTCATGTCTTTGATATGTTCATTATTGGATAACTTTTTCCTTGCTGT GAACATAGCTGTCAAATTGGGATTATGACTTTAATCTGGAAAGGGGTGTTAATCATAAATCGCATAGTCGTAAAATAGCA TGTGTGTGTAAGTTATATCATAAAGATAAGAAAGAAGCAACAACATGTGAGTGTACAAGATCTCATAGTTGTAAAATAGC ATATCTAAGCGACTTTAATCTCGATTTTGACTACTATGGTTGTAAGTTATAACTTGTAAAATTGGGATTTTTTGTTTGAA TTAATTGCATTGTGAAACAGTTTATGTGCCATGCATTAAATATAATACATGTTATTTAATGTAATAAATGTATGCAACCT TTGAATTTAATACATTTTTCATGTAGGCATACTTGAATTTGCGAAGCCTTGGTACAGAAAAACAAGGCGGTATAAAGCAC TCCTCATCGTTCCTTCAGGAATCCATAACTACCCTTCTTCACACAATCAGTGAATCAGAAAAATCCTGTTATGTTAATCA CATAAACAGCTACCTTGGTGATGACCCATTTCTGAAGCAATATCTTCCTTTGGACCCAGCTACAAATGGTCTATTCGAAC TTGTAAAAGATGGCATTCTTCTTTGGTATATATAAGCAGGGTCTGCTAATTTTGTGCTTTACTCATGTGTATACAAGCCT TTAATATATACTGAAATTGATATACATTCTGCCTTTTGCAGTAAGCTTATCAATGTGGCCGTGCCTGGGACTATAGATGA GCGAGCCATCAATACCAAACGAAATCCTAGCCTTTGGGAGAGAAATGAGAACCATACTCTATGCCTCAATTCTGCAAAGG CCATAGGCTGCACAGTGGTTAACATAGGCACACAGGACTTGGTTGAAGGAAGGGTGAGTTTTTGCAATCTGAGCTCTCCA TAATCATGTTATGGTCAATAATATCCTACAAATTTTGTTGTTGACCTCACTTAATAGGATAAGACCTTTGTTGTTGTTGT TTTTTTTTAACTTGTGACCTTTAAGTTCTTAATCTTTCACTGTTGTGACATTATTGTCTGGCTGTTTATCTTGCAGCCTC ATCTTGTTCTAGGGTTGATTTCCCAAATCTTTAAGGTAAATACTCAAACTTCATATGTCATTTGTTCATTTTTAGTTAGT TGTTTTAACTTATTTGGATTTGCTTGTATGCTGTCACTTTTTGTTTTCTTCTTGACCTAATAGATTTTCTAACTTTAGGA ATGAGTAATCTGACATTGTTATATTTTCCTCCCACTCTTTGTGATTTCAGATCCAACTGCTGGCAGATCTCAACCTCAAG AAGACACCTCAACTCGTGGAATTGGTTGATGACAGCCAGGTAATGAGATATGCATTTTCTTTCTTCCTTAAATTTTATTT TCGTTCATATTAAATCAAATTTAAATGTTCCTTTTTTCACATATTGTTTTTTATAACTGATTCATCTTTCATTTTGTTGT TGTCTCAGGAAATTGAAGAGCTTCTTAGTTTGTCACCTGAAAAGGTTCTACTAAAATGGATGAATTTTCACCTCCAGAGA GGAGGTTACCAGAAAACTGTTAAAAATTACTCTTCTGATGTTAAGGTATATGAGCACTTATAACATTTTATGCTCAGGAA TGTCGGATACTGATTTGACTAATTTCTCATTTGTTAATTTTGTTTGTCATTATTCTTGTATGCTTAAGAATACAACTAGA TAAATTGTAAATAAACCAAAAGTATTGGTTGTTCATTCAGATTTGTTATTCCTACAACTCCAGACTTCTAATTTTGCCTC TACAATTTGAAACTGAATTAAGCTATTGCCAATCCAATATACTTATGTATTCATGTTTGTTAATTTACAGGATGGAGAGG CTTATGCTTATCTGCTTAATGTCCTTGCTCCTGAACATTGCAATCCGGCCACCTTGGATACTAAAGATCCTACTGAAAGA GCAAATCTAGTGCTTGAACATGCAGAGAAAATGGGCTGCAAAAGATACTTGACCCCAAGGGACATTGTAGAGGGTACCTC AAATCTGAATCTTGCATTTGTTGCACAATTGTTTCAGCACAGGTATGAAATGAATTGCATAACTATTAACTAATTTTATG CAGACAACTTCATAGTTTAAACAATTGTTCTATGGTGGAAGATCTCTTTTTTTTGGTTTATTTATTGTCATCATCATCAT TGATTCACTGTGTTGAGGTGATATCAAGTGCGAGTAAGAAGTCTCACATTAAAAGAAAAAGAATGTGTTGCACTTTATAA GTGAGAGGACTCATACACTCAATGCCTTAAGGTTTTGGGTGAAATATGTGGTGTGTAATCCACTTGTGATTTGCTTTTTA GCCCAATGTGGAGATCCCCCCGGAGTTTTATACCTCTTGCGGCAAACAGCGGTCTGATTGGCATGCATGGTTGTCTGACT GTGGGCTACATAACATGTAGAATAGTTTATGTAGAAGTTGAACACTTCAGTTGATTGGTTATTTTGAAGTACTTATATCA TTTCTTTGTACATGATGACACAAAAACAGAAAAACACTGTTGAATTTCCCCTTGAGATAAAGGTTCAAATATTCTACCTA GACAATTCATGATTGTTTTACTTTTATTTCTCTTCAGAAATACATAGGTTTTTAGTAGAATTACATATGAAATTTCTGTA AGTTTTCCTGATAAGTTCTCTAGTTATTTAATCACGGCCCTGCACATTGCAGGAGTGGCCTATCTACAGATACTCGAAAG ATGTCCTATGCTGAGATGATGACGGAAGATGTGCAGACTTGTAGAGAAGAGAGATGCTTCCGGATGTGGATCAATAGTCT TGGAATTTCCACTCATGTAAACAATCTTTTTGAGGATGTCAGAAATGGGTATGTGTTTGTTTTCTTAAATTACATTACTA TATTGTCAAAATCTAATGCCTTTTTATGTGTCGAGAAAATTGCAAATTTTCTGAATCTCAAAACAGTCATAGCATGTTGG ATAAGCTTCTTTTTCCTCAGATTCTAACACCCAGAAGTTAATCACAGAAGCTTCTCCCCATAATTGATTCTGACTTTAGA ATCAATTGAATCATTTTTTCCAAACATGCGCTGAATGAGCCACCCGGCACATATTTATTCACTGATTCTTTAGAATTAAC AGCCTTTAGTTGCTCTTTTTTCCTTTCTTTATCTGTTAATGTAAATTTATATCTTTTCTTTGTCCTCATGTCTACTTTCA AGTTTCAGATATTTTTCCTGCTATCCCATGTTGGGAAAAAGGAACTGAATGTGATGTGGAGTGGTCTTCAATAATATTTA GAGACTTTATATCTTTGCTTAATCTTATCGCATTTTTGTAAAGAGTAATTAATGAATGTGTTATCCAAATCTGATTTATA AATCCTCTAAGTTTTTAATGTGTTTTATTTTTCTTTAAACTTTTTGTGAGTAGATGGATACTTCTAGAAGTGCTAGACAA GATTTTTCCAGGAACAGTTAACTGGAAACTGGCAACAAGACCTCCGATTAGAATGCCATTCAGAAAAGTAGAGAACTGCA ATCAGGTCATCAAAATTGGTAAACAACTGAGATTCTCATTAGTCAATGTAGCTGGCAATGACATTGTGCAAGGAAATAAG AAGCTCATTCTTGGTAACTTTTTCATCTTGTTATAGCTTCCACATAAATGTTATAGACTTTTATTTTTGATAAGCCATAA ATGTTATGGACTTGATTTTCTGTTACATAATGTCCCCTTTTCCCACATGCCTAATTTAGCTTTCAGTTTGTGGAAGATTG ACTACTAAATTTTTTTATTTCAGATCTTTGATGAAAAGAAAAATATTGGATGGCATTGCAGTTGTTTTTGTCCTTGAAAG AGACTTGCTGTAACAGTCTAACATAATGCTATATTTTTCAGCTTTGTTGTGGCAGTTGATGAGATTCACAATGCTTCAAC TTTTGAAAAATTTGAGATCTCATTCCCAAGGAAAAGAGATAAGTGATGCTGATATCCTGAAATGGGCAAACAGAAAAGTG AAGAGCACTGGCAGAACTTCTCATATAGAGAGTTTCAAGGTTTTTATTTTCTGTCTAAAGATTTTTTTTCGTTTATTTTC CACAAAATATGCCCAACAGAAGTAAACTAAAATGATGGTTTGTTAGTAATAGTGACACAATTTTGGACGTAATTTTATAT GCAGGATAGGAGCTTGTCAACTGGTCTCTTTTTCCTCGAGCTTCTGAGTGCTGTAGAGCCCAGGGTTGTCAATTGGAACC TTGTCACTAAGGGAGAAACTGGTATGATTCCTTGCAGAAGTTACTATTTTGCATTTTGGCCAATTGTATGGGGATGAATA GATATAAACATGTCCTTTGCACAACATTTATACCTTTGCTATTTTTATCATGCATGCTAAATTAGCATTACTTGTTGTTT TCTATATTGTAGATGATGAAAAGAAGTTGAATGCCACATATACAATCAGTGTTGCAAGGAAGCTTGGTTGTTCCATCTTT TTGTTACCTGAGGATATTATGGAGGTATGATTGCCACCATCTAATTTTTCTCATTAATATTTCTTACAGAAGATCATTCA CATGGCACAATGCATGTTCAGAAATCTTTCTACAATTTATTCTAAAGTCAAAACCGATTCTGAGAAGAAGCTTCTCTTAG TGTGTGCCTCAGAATCAATTCGAATAGAGTAAAATCGATTTTGGATGAAAATATATATGTTTGAGAGTCAATTTGGAGAA TTGATTTCAGTACCAAAATTAATTCTGCTTGAAGCTTGAGTGAGTAGCTTCTACATTAAACATATTAATTTTGAGATTTT ACAACTGGGTGCCAGAACTGATCCTGAGAAAATAGAGGCGGATCCAAGCATACTAACAGATGTTGAAATTTTGAGTTGAC ATCTTCCAGGGTGGACTTTGTTTATGCTGTGCTTAATTCCTTGTTGGTCTTATTGTCATGGCAGATTAACCAGAAGATGG TTCTCACTCTTGCAGCCAGTATAATGTATTGGAGCCTGCAACAGCAGACTGAAGATGCAGATTCATTTCCTTCACCTGCA GATACTGCTACTACAACCACCCCTGAAGCATCCCCAGCACCTTCAGTTTGTGGTGAAGATGAAATTTCCTCTCTTGGTGG TGAATTATCCAACTTGAGTGTTGATGATGCCACCTCTGACACAACAGTCTCTTCAACACTTGAATCTGATGAGCTACTAT GAGTATAGTTTTCAAGGCTTTCATG
CDS sequence (LotjaGi1g1v0022300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAAAATTTGAGGGTGTTATTGTCTCCGATCAATGGCTTCATAGCCAGTTTACGCAGGTTGAACTTCGCGCCCTGAA ATCAAAATTTGTCTCTTTGAAGAATCAGAATGGTAAAGTTACATTAGGAGATTTGCCACCTCTAATGGTGAAGCTCAAGG CATTCAGAGACATGTACAAGGAGGATGAGATTAAGGGGATTTTGGGTGATTCAGGCACTGACTTTACCATTGATATTGAT TTTGAAGCCTTCTTAAGGGCATACTTGAATTTGCGAAGCCTTGGTACAGAAAAACAAGGCGGTATAAAGCACTCCTCATC GTTCCTTCAGGAATCCATAACTACCCTTCTTCACACAATCAGTGAATCAGAAAAATCCTGTTATGTTAATCACATAAACA GCTACCTTGGTGATGACCCATTTCTGAAGCAATATCTTCCTTTGGACCCAGCTACAAATGGTCTATTCGAACTTGTAAAA GATGGCATTCTTCTTTGTAAGCTTATCAATGTGGCCGTGCCTGGGACTATAGATGAGCGAGCCATCAATACCAAACGAAA TCCTAGCCTTTGGGAGAGAAATGAGAACCATACTCTATGCCTCAATTCTGCAAAGGCCATAGGCTGCACAGTGGTTAACA TAGGCACACAGGACTTGGTTGAAGGAAGGCCTCATCTTGTTCTAGGGTTGATTTCCCAAATCTTTAAGATCCAACTGCTG GCAGATCTCAACCTCAAGAAGACACCTCAACTCGTGGAATTGGTTGATGACAGCCAGGAAATTGAAGAGCTTCTTAGTTT GTCACCTGAAAAGGTTCTACTAAAATGGATGAATTTTCACCTCCAGAGAGGAGGTTACCAGAAAACTGTTAAAAATTACT CTTCTGATGTTAAGGATGGAGAGGCTTATGCTTATCTGCTTAATGTCCTTGCTCCTGAACATTGCAATCCGGCCACCTTG GATACTAAAGATCCTACTGAAAGAGCAAATCTAGTGCTTGAACATGCAGAGAAAATGGGCTGCAAAAGATACTTGACCCC AAGGGACATTGTAGAGGGTACCTCAAATCTGAATCTTGCATTTGTTGCACAATTGTTTCAGCACAGGAGTGGCCTATCTA CAGATACTCGAAAGATGTCCTATGCTGAGATGATGACGGAAGATGTGCAGACTTGTAGAGAAGAGAGATGCTTCCGGATG TGGATCAATAGTCTTGGAATTTCCACTCATGTAAACAATCTTTTTGAGGATGTCAGAAATGGATGGATACTTCTAGAAGT GCTAGACAAGATTTTTCCAGGAACAGTTAACTGGAAACTGGCAACAAGACCTCCGATTAGAATGCCATTCAGAAAAGTAG AGAACTGCAATCAGGTCATCAAAATTGGTAAACAACTGAGATTCTCATTAGTCAATGTAGCTGGCAATGACATTGTGCAA GGAAATAAGAAGCTCATTCTTGCTTTGTTGTGGCAGTTGATGAGATTCACAATGCTTCAACTTTTGAAAAATTTGAGATC TCATTCCCAAGGAAAAGAGATAAGTGATGCTGATATCCTGAAATGGGCAAACAGAAAAGTGAAGAGCACTGGCAGAACTT CTCATATAGAGAGTTTCAAGGATAGGAGCTTGTCAACTGGTCTCTTTTTCCTCGAGCTTCTGAGTGCTGTAGAGCCCAGG GTTGTCAATTGGAACCTTGTCACTAAGGGAGAAACTGATGATGAAAAGAAGTTGAATGCCACATATACAATCAGTGTTGC AAGGAAGCTTGGTTGTTCCATCTTTTTGTTACCTGAGGATATTATGGAGATTAACCAGAAGATGGTTCTCACTCTTGCAG CCAGTATAATGTATTGGAGCCTGCAACAGCAGACTGAAGATGCAGATTCATTTCCTTCACCTGCAGATACTGCTACTACA ACCACCCCTGAAGCATCCCCAGCACCTTCAGTTTGTGGTGAAGATGAAATTTCCTCTCTTGGTGGTGAATTATCCAACTT GAGTGTTGATGATGCCACCTCTGACACAACAGTCTCTTCAACACTTGAATCTGATGAGCTACTATGA
Protein sequence (LotjaGi1g1v0022300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKFEGVIVSDQWLHSQFTQVELRALKSKFVSLKNQNGKVTLGDLPPLMVKLKAFRDMYKEDEIKGILGDSGTDFTIDID FEAFLRAYLNLRSLGTEKQGGIKHSSSFLQESITTLLHTISESEKSCYVNHINSYLGDDPFLKQYLPLDPATNGLFELVK DGILLCKLINVAVPGTIDERAINTKRNPSLWERNENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLVLGLISQIFKIQLL ADLNLKKTPQLVELVDDSQEIEELLSLSPEKVLLKWMNFHLQRGGYQKTVKNYSSDVKDGEAYAYLLNVLAPEHCNPATL DTKDPTERANLVLEHAEKMGCKRYLTPRDIVEGTSNLNLAFVAQLFQHRSGLSTDTRKMSYAEMMTEDVQTCREERCFRM WINSLGISTHVNNLFEDVRNGWILLEVLDKIFPGTVNWKLATRPPIRMPFRKVENCNQVIKIGKQLRFSLVNVAGNDIVQ GNKKLILALLWQLMRFTMLQLLKNLRSHSQGKEISDADILKWANRKVKSTGRTSHIESFKDRSLSTGLFFLELLSAVEPR VVNWNLVTKGETDDEKKLNATYTISVARKLGCSIFLLPEDIMEINQKMVLTLAASIMYWSLQQQTEDADSFPSPADTATT TTPEASPAPSVCGEDEISSLGGELSNLSVDDATSDTTVSSTLESDELL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 685 | 682 | 0.0 | ||
| PANTHER | 4 | 685 | 682 | 0.0 | – | |
| Gene3D | 118 | 244 | 127 | 2.2E-38 | ||
| SUPERFAMILY | 120 | 618 | 499 | 2.23E-168 | ||
| ProSiteProfiles | 122 | 239 | 118 | 21.554 | ||
| SMART | 124 | 237 | 114 | 2.3E-20 | ||
| CDD | 130 | 237 | 108 | 2.99643E-19 | ||
| Pfam | 152 | 237 | 86 | 1.9E-17 | ||
| Gene3D | 245 | 373 | 129 | 1.2E-39 | ||
| ProSiteProfiles | 267 | 370 | 104 | 22.359 | ||
| CDD | 268 | 368 | 101 | 1.61213E-17 | ||
| Pfam | 268 | 369 | 102 | 2.8E-22 | ||
| SMART | 269 | 368 | 100 | 3.0E-22 | ||
| Gene3D | 388 | 505 | 118 | 3.1E-38 | ||
| ProSiteProfiles | 392 | 498 | 107 | 22.977 | ||
| SMART | 394 | 496 | 103 | 7.6E-27 | ||
| Pfam | 395 | 496 | 102 | 1.6E-19 | ||
| CDD | 401 | 495 | 95 | 6.81871E-15 | ||
| ProSitePatterns | 470 | 494 | 25 | - | ||
| Gene3D | 506 | 618 | 113 | 1.0E-36 | ||
| ProSiteProfiles | 513 | 621 | 109 | 18.923 | ||
| SMART | 515 | 619 | 105 | 3.2E-14 | ||
| Pfam | 516 | 617 | 102 | 2.5E-16 | ||
| MobiDBLite | 627 | 688 | 62 | - | – | |
| MobiDBLite | 627 | 647 | 21 | - | – | |
| MobiDBLite | 661 | 688 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Actin filament binding | Interacting selectively and non-covalently with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits. | ||
| Biological process | Actin filament bundle assembly | The assembly of actin filament bundles; actin filaments are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness. |
Expression pattern of LotjaGi1g1v0022300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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