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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0022300 |
| Transcript ID | LotjaGi1g1v0022300.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fimbrin-like protein 2; TAIR: AT4G26700.7 fimbrin 1; Swiss-Prot: sp|Q9FJ70|FIMB3_ARATH Fimbrin-3; TrEMBL-Plants: tr|K7KBJ8|K7KBJ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0022300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2749129..2753808) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTCTATTCGAACTTGTAAAAGATGGCATTCTTCTTTGGTATATATAAGCAGGGTCTGCTAATTTTGTGCTTTACTCA TGTGTATACAAGCCTTTAATATATACTGAAATTGATATACATTCTGCCTTTTGCAGTAAGCTTATCAATGTGGCCGTGCC TGGGACTATAGATGAGCGAGCCATCAATACCAAACGAAATCCTAGCCTTTGGGAGAGAAATGAGAACCATACTCTATGCC TCAATTCTGCAAAGGCCATAGGCTGCACAGTGGTTAACATAGGCACACAGGACTTGGTTGAAGGAAGGGTGAGTTTTTGC AATCTGAGCTCTCCATAATCATGTTATGGTCAATAATATCCTACAAATTTTGTTGTTGACCTCACTTAATAGGATAAGAC CTTTGTTGTTGTTGTTTTTTTTTAACTTGTGACCTTTAAGTTCTTAATCTTTCACTGTTGTGACATTATTGTCTGGCTGT TTATCTTGCAGCCTCATCTTGTTCTAGGGTTGATTTCCCAAATCTTTAAGGTAAATACTCAAACTTCATATGTCATTTGT TCATTTTTAGTTAGTTGTTTTAACTTATTTGGATTTGCTTGTATGCTGTCACTTTTTGTTTTCTTCTTGACCTAATAGAT TTTCTAACTTTAGGAATGAGTAATCTGACATTGTTATATTTTCCTCCCACTCTTTGTGATTTCAGATCCAACTGCTGGCA GATCTCAACCTCAAGAAGACACCTCAACTCGTGGAATTGGTTGATGACAGCCAGGTAATGAGATATGCATTTTCTTTCTT CCTTAAATTTTATTTTCGTTCATATTAAATCAAATTTAAATGTTCCTTTTTTCACATATTGTTTTTTATAACTGATTCAT CTTTCATTTTGTTGTTGTCTCAGGAAATTGAAGAGCTTCTTAGTTTGTCACCTGAAAAGGTTCTACTAAAATGGATGAAT TTTCACCTCCAGAGAGGAGGTTACCAGAAAACTGTTAAAAATTACTCTTCTGATGTTAAGGTATATGAGCACTTATAACA TTTTATGCTCAGGAATGTCGGATACTGATTTGACTAATTTCTCATTTGTTAATTTTGTTTGTCATTATTCTTGTATGCTT AAGAATACAACTAGATAAATTGTAAATAAACCAAAAGTATTGGTTGTTCATTCAGATTTGTTATTCCTACAACTCCAGAC TTCTAATTTTGCCTCTACAATTTGAAACTGAATTAAGCTATTGCCAATCCAATATACTTATGTATTCATGTTTGTTAATT TACAGGATGGAGAGGCTTATGCTTATCTGCTTAATGTCCTTGCTCCTGAACATTGCAATCCGGCCACCTTGGATACTAAA GATCCTACTGAAAGAGCAAATCTAGTGCTTGAACATGCAGAGAAAATGGGCTGCAAAAGATACTTGACCCCAAGGGACAT TGTAGAGGGTACCTCAAATCTGAATCTTGCATTTGTTGCACAATTGTTTCAGCACAGGTATGAAATGAATTGCATAACTA TTAACTAATTTTATGCAGACAACTTCATAGTTTAAACAATTGTTCTATGGTGGAAGATCTCTTTTTTTTGGTTTATTTAT TGTCATCATCATCATTGATTCACTGTGTTGAGGTGATATCAAGTGCGAGTAAGAAGTCTCACATTAAAAGAAAAAGAATG TGTTGCACTTTATAAGTGAGAGGACTCATACACTCAATGCCTTAAGGTTTTGGGTGAAATATGTGGTGTGTAATCCACTT GTGATTTGCTTTTTAGCCCAATGTGGAGATCCCCCCGGAGTTTTATACCTCTTGCGGCAAACAGCGGTCTGATTGGCATG CATGGTTGTCTGACTGTGGGCTACATAACATGTAGAATAGTTTATGTAGAAGTTGAACACTTCAGTTGATTGGTTATTTT GAAGTACTTATATCATTTCTTTGTACATGATGACACAAAAACAGAAAAACACTGTTGAATTTCCCCTTGAGATAAAGGTT CAAATATTCTACCTAGACAATTCATGATTGTTTTACTTTTATTTCTCTTCAGAAATACATAGGTTTTTAGTAGAATTACA TATGAAATTTCTGTAAGTTTTCCTGATAAGTTCTCTAGTTATTTAATCACGGCCCTGCACATTGCAGGAGTGGCCTATCT ACAGATACTCGAAAGATGTCCTATGCTGAGATGATGACGGAAGATGTGCAGACTTGTAGAGAAGAGAGATGCTTCCGGAT GTGGATCAATAGTCTTGGAATTTCCACTCATGTAAACAATCTTTTTGAGGATGTCAGAAATGGGTATGTGTTTGTTTTCT TAAATTACATTACTATATTGTCAAAATCTAATGCCTTTTTATGTGTCGAGAAAATTGCAAATTTTCTGAATCTCAAAACA GTCATAGCATGTTGGATAAGCTTCTTTTTCCTCAGATTCTAACACCCAGAAGTTAATCACAGAAGCTTCTCCCCATAATT GATTCTGACTTTAGAATCAATTGAATCATTTTTTCCAAACATGCGCTGAATGAGCCACCCGGCACATATTTATTCACTGA TTCTTTAGAATTAACAGCCTTTAGTTGCTCTTTTTTCCTTTCTTTATCTGTTAATGTAAATTTATATCTTTTCTTTGTCC TCATGTCTACTTTCAAGTTTCAGATATTTTTCCTGCTATCCCATGTTGGGAAAAAGGAACTGAATGTGATGTGGAGTGGT CTTCAATAATATTTAGAGACTTTATATCTTTGCTTAATCTTATCGCATTTTTGTAAAGAGTAATTAATGAATGTGTTATC CAAATCTGATTTATAAATCCTCTAAGTTTTTAATGTGTTTTATTTTTCTTTAAACTTTTTGTGAGTAGATGGATACTTCT AGAAGTGCTAGACAAGATTTTTCCAGGAACAGTTAACTGGAAACTGGCAACAAGACCTCCGATTAGAATGCCATTCAGAA AAGTAGAGAACTGCAATCAGGTCATCAAAATTGGTAAACAACTGAGATTCTCATTAGTCAATGTAGCTGGCAATGACATT GTGCAAGGAAATAAGAAGCTCATTCTTGGTAACTTTTTCATCTTGTTATAGCTTCCACATAAATGTTATAGACTTTTATT TTTGATAAGCCATAAATGTTATGGACTTGATTTTCTGTTACATAATGTCCCCTTTTCCCACATGCCTAATTTAGCTTTCA GTTTGTGGAAGATTGACTACTAAATTTTTTTATTTCAGATCTTTGATGAAAAGAAAAATATTGGATGGCATTGCAGTTGT TTTTGTCCTTGAAAGAGACTTGCTGTAACAGTCTAACATAATGCTATATTTTTCAGCTTTGTTGTGGCAGTTGATGAGAT TCACAATGCTTCAACTTTTGAAAAATTTGAGATCTCATTCCCAAGGAAAAGAGATAAGTGATGCTGATATCCTGAAATGG GCAAACAGAAAAGTGAAGAGCACTGGCAGAACTTCTCATATAGAGAGTTTCAAGGTTTTTATTTTCTGTCTAAAGATTTT TTTTCGTTTATTTTCCACAAAATATGCCCAACAGAAGTAAACTAAAATGATGGTTTGTTAGTAATAGTGACACAATTTTG GACGTAATTTTATATGCAGGATAGGAGCTTGTCAACTGGTCTCTTTTTCCTCGAGCTTCTGAGTGCTGTAGAGCCCAGGG TTGTCAATTGGAACCTTGTCACTAAGGGAGAAACTGGTATGATTCCTTGCAGAAGTTACTATTTTGCATTTTGGCCAATT GTATGGGGATGAATAGATATAAACATGTCCTTTGCACAACATTTATACCTTTGCTATTTTTATCATGCATGCTAAATTAG CATTACTTGTTGTTTTCTATATTGTAGATGATGAAAAGAAGTTGAATGCCACATATACAATCAGTGTTGCAAGGAAGCTT GGTTGTTCCATCTTTTTGTTACCTGAGGATATTATGGAGGTATGATTGCCACCATCTAATTTTTCTCATTAATATTTCTT ACAGAAGATCATTCACATGGCACAATGCATGTTCAGAAATCTTTCTACAATTTATTCTAAAGTCAAAACCGATTCTGAGA AGAAGCTTCTCTTAGTGTGTGCCTCAGAATCAATTCGAATAGAGTAAAATCGATTTTGGATGAAAATATATATGTTTGAG AGTCAATTTGGAGAATTGATTTCAGTACCAAAATTAATTCTGCTTGAAGCTTGAGTGAGTAGCTTCTACATTAAACATAT TAATTTTGAGATTTTACAACTGGGTGCCAGAACTGATCCTGAGAAAATAGAGGCGGATCCAAGCATACTAACAGATGTTG AAATTTTGAGTTGACATCTTCCAGGGTGGACTTTGTTTATGCTGTGCTTAATTCCTTGTTGGTCTTATTGTCATGGCAGA TTAACCAGAAGATGGTTCTCACTCTTGCAGCCAGTATAATGTATTGGAGCCTGCAACAGCAGACTGAAGATGCAGATTCA TTTCCTTCACCTGCAGATACTGCTACTACAACCACCCCTGAAGCATCCCCAGCACCTTCAGTTTGTGGTGAAGATGAAAT TTCCTCTCTTGGTGGTGAATTATCCAACTTGAGTGTTGATGATGCCACCTCTGACACAACAGTCTCTTCAACACTTGAAT CTGATGAGCTACTATGAGTATAGTTTTCAAGGCTTTCATG
CDS sequence (LotjaGi1g1v0022300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATTCTTCTTTGGTATATATAATAAGCTTATCAATGTGGCCGTGCCTGGGACTATAGATGAGCGAGCCATCAATAC CAAACGAAATCCTAGCCTTTGGGAGAGAAATGAGAACCATACTCTATGCCTCAATTCTGCAAAGGCCATAGGCTGCACAG TGGTTAACATAGGCACACAGGACTTGGTTGAAGGAAGGCCTCATCTTGTTCTAGGGTTGATTTCCCAAATCTTTAAGATC CAACTGCTGGCAGATCTCAACCTCAAGAAGACACCTCAACTCGTGGAATTGGTTGATGACAGCCAGGAAATTGAAGAGCT TCTTAGTTTGTCACCTGAAAAGGTTCTACTAAAATGGATGAATTTTCACCTCCAGAGAGGAGGTTACCAGAAAACTGTTA AAAATTACTCTTCTGATGTTAAGGATGGAGAGGCTTATGCTTATCTGCTTAATGTCCTTGCTCCTGAACATTGCAATCCG GCCACCTTGGATACTAAAGATCCTACTGAAAGAGCAAATCTAGTGCTTGAACATGCAGAGAAAATGGGCTGCAAAAGATA CTTGACCCCAAGGGACATTGTAGAGGGTACCTCAAATCTGAATCTTGCATTTGTTGCACAATTGTTTCAGCACAGGAGTG GCCTATCTACAGATACTCGAAAGATGTCCTATGCTGAGATGATGACGGAAGATGTGCAGACTTGTAGAGAAGAGAGATGC TTCCGGATGTGGATCAATAGTCTTGGAATTTCCACTCATGTAAACAATCTTTTTGAGGATGTCAGAAATGGATGGATACT TCTAGAAGTGCTAGACAAGATTTTTCCAGGAACAGTTAACTGGAAACTGGCAACAAGACCTCCGATTAGAATGCCATTCA GAAAAGTAGAGAACTGCAATCAGGTCATCAAAATTGGTAAACAACTGAGATTCTCATTAGTCAATGTAGCTGGCAATGAC ATTGTGCAAGGAAATAAGAAGCTCATTCTTGCTTTGTTGTGGCAGTTGATGAGATTCACAATGCTTCAACTTTTGAAAAA TTTGAGATCTCATTCCCAAGGAAAAGAGATAAGTGATGCTGATATCCTGAAATGGGCAAACAGAAAAGTGAAGAGCACTG GCAGAACTTCTCATATAGAGAGTTTCAAGGATAGGAGCTTGTCAACTGGTCTCTTTTTCCTCGAGCTTCTGAGTGCTGTA GAGCCCAGGGTTGTCAATTGGAACCTTGTCACTAAGGGAGAAACTGATGATGAAAAGAAGTTGAATGCCACATATACAAT CAGTGTTGCAAGGAAGCTTGGTTGTTCCATCTTTTTGTTACCTGAGGATATTATGGAGATTAACCAGAAGATGGTTCTCA CTCTTGCAGCCAGTATAATGTATTGGAGCCTGCAACAGCAGACTGAAGATGCAGATTCATTTCCTTCACCTGCAGATACT GCTACTACAACCACCCCTGAAGCATCCCCAGCACCTTCAGTTTGTGGTGAAGATGAAATTTCCTCTCTTGGTGGTGAATT ATCCAACTTGAGTGTTGATGATGCCACCTCTGACACAACAGTCTCTTCAACACTTGAATCTGATGAGCTACTATGA
Protein sequence (LotjaGi1g1v0022300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFFFGIYNKLINVAVPGTIDERAINTKRNPSLWERNENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLVLGLISQIFKI QLLADLNLKKTPQLVELVDDSQEIEELLSLSPEKVLLKWMNFHLQRGGYQKTVKNYSSDVKDGEAYAYLLNVLAPEHCNP ATLDTKDPTERANLVLEHAEKMGCKRYLTPRDIVEGTSNLNLAFVAQLFQHRSGLSTDTRKMSYAEMMTEDVQTCREERC FRMWINSLGISTHVNNLFEDVRNGWILLEVLDKIFPGTVNWKLATRPPIRMPFRKVENCNQVIKIGKQLRFSLVNVAGND IVQGNKKLILALLWQLMRFTMLQLLKNLRSHSQGKEISDADILKWANRKVKSTGRTSHIESFKDRSLSTGLFFLELLSAV EPRVVNWNLVTKGETDDEKKLNATYTISVARKLGCSIFLLPEDIMEINQKMVLTLAASIMYWSLQQQTEDADSFPSPADT ATTTTPEASPAPSVCGEDEISSLGGELSNLSVDDATSDTTVSSTLESDELL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 82 | 82 | 14.195 | ||
| Gene3D | 7 | 87 | 81 | 1.1E-20 | ||
| SMART | 7 | 80 | 74 | 0.048 | ||
| Pfam | 7 | 80 | 74 | 1.4E-11 | ||
| CDD | 7 | 80 | 74 | 8.1238E-14 | ||
| PANTHER | 9 | 528 | 520 | 0.0 | – | |
| SUPERFAMILY | 9 | 461 | 453 | 3.37E-150 | ||
| PANTHER | 9 | 528 | 520 | 0.0 | ||
| Gene3D | 88 | 216 | 129 | 8.0E-40 | ||
| ProSiteProfiles | 110 | 213 | 104 | 22.359 | ||
| CDD | 111 | 211 | 101 | 1.19664E-17 | ||
| Pfam | 111 | 212 | 102 | 1.9E-22 | ||
| SMART | 112 | 211 | 100 | 3.0E-22 | ||
| Gene3D | 231 | 348 | 118 | 2.1E-38 | ||
| ProSiteProfiles | 235 | 341 | 107 | 22.977 | ||
| SMART | 237 | 339 | 103 | 7.6E-27 | ||
| Pfam | 238 | 339 | 102 | 1.1E-19 | ||
| CDD | 244 | 338 | 95 | 5.13131E-15 | ||
| ProSitePatterns | 313 | 337 | 25 | - | ||
| Gene3D | 349 | 461 | 113 | 6.9E-37 | ||
| ProSiteProfiles | 356 | 464 | 109 | 18.923 | ||
| SMART | 358 | 462 | 105 | 3.2E-14 | ||
| Pfam | 359 | 460 | 102 | 1.6E-16 | ||
| MobiDBLite | 470 | 490 | 21 | - | – | |
| MobiDBLite | 470 | 531 | 62 | - | – | |
| MobiDBLite | 504 | 531 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Actin filament binding | Interacting selectively and non-covalently with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits. | ||
| Biological process | Actin filament bundle assembly | The assembly of actin filament bundles; actin filaments are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness. |
Expression pattern of LotjaGi1g1v0022300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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