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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0022700 |
| Transcript ID | LotjaGi1g1v0022700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Syntaxin; TAIR: AT1G16240.1 syntaxin of plants 51; Swiss-Prot: sp|Q9SA23|SYP51_ARATH Syntaxin-51; TrEMBL-Plants: tr|I3SKD4|I3SKD4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0022700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2780759..2782197) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCATCTTCTTCAGACTCATGGGTGAAGGAATACAATGAAGCAGTGAAACTTGCTGATGATATCAGCACCATGATTTC CGAGCGGAGTTCGTCTGTGGAATCTGGACCGGAAGCCCAACGTCATTCATCTGCTATAAGAAGGAAGATCACAATATTAG GGACCAGGCTTGATAGCTTGCAATCCCTTTTGTCAAAGCTTCCAGCTGGGAAGCAGCCTGTGTGAGTGTCTAGTTGTTGA TTATGCTGGTTAAAAAAGTCATGCTGTTATACATTAGAGCCACTAGGACTTGGAACACTAGGCAGTCTGCACTGCTGTCC TTTGGAGTTTCCCTTTTTGAAATAAATGTTTTAAAGGTCTCTTCTGATATTAACTACATGTTTGAAAATCCTTCTATAGT TGATTCTAAAGCTAAAATCAATTATGATGAGAAGTTTCAGTGAATAACTTCTAGGTGTTCGAACTGATTCTGGGGAAACA TAAACTGAACCAAAATGCTATAACTCTTTCTCTCTCTCTCTCTCTCTCTCTGGGGCTGTCTTTACCAGAGTAATACTGAA CTGTATTATACTAGATCTGAAGATGTATGATGAAGTTGCATCCTTGTTGTCTGAAGTGTGTTTCATTGCAATGTTGCAGA TCTGAGAAGGAGCTGAATCGTCGCAAGGACATGCTTGCAAGTTTGAGATCAAGAGTTAACGAGATGGCTTCCACGTTGAG CATGCCAAATTTTTCCAACAGGGATAGTTTGTTTGGGCCAGAAATAAAGCCAGATGCAATGAGTAGGACCAATGGCCTGG ACAACAAAGGAGTTATTGGACTTCAACGACAAATTATGAAAGGTCATTTAATTGAATTGTTTGAAAATACGTTGCTTGTA GTCTGTTCCTTGATCTTATAGTACATTGCTGTTCAAACAGAACAAGATGAGGGCCTTGAGAAATTGGAGGAAAGTGTAAC AAGCACAAAACATATTGCATTAGCTGTGAATGAAGAGCTGGATCTACACACGAGTCTCATTGTATGTTCTCTTCATGCAT TAATTTTTCTTTGTTCTTGTTTGTGTCAGCTATTTTCTTCTGGTCTACCCTCCTTAGTAAAATTGAATCCTTTCTTTTCA TCTGCCAGGATGACTTGGACCAACATGTAGATGTCACAGATTCTCGGCTTAGGGTAATATTCTTATAGTAACTTCTATCT GGACCGATACTCTTATTTAGTTTTATCAAAGTTAAATTATGTTAATTTGTTGAATGTTGACATTTGTACCAACTAACAGC TTATCGTTTATGTTTCTGTGAAAACAGCGTGTGCAGAAGAACTTGGCAGTTTTAAATAAACGAACCAACGGTGGTTGCTC CTGCTTGTGCATGCTTTTATCAGTGATTGGCATAGTGGTTTTGGTTGTTGTCATTGGGCTGTTGGTCAAATATCTGTAA
CDS sequence (LotjaGi1g1v0022700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCTTCTTCAGACTCATGGGTGAAGGAATACAATGAAGCAGTGAAACTTGCTGATGATATCAGCACCATGATTTC CGAGCGGAGTTCGTCTGTGGAATCTGGACCGGAAGCCCAACGTCATTCATCTGCTATAAGAAGGAAGATCACAATATTAG GGACCAGGCTTGATAGCTTGCAATCCCTTTTGTCAAAGCTTCCAGCTGGGAAATCTGAGAAGGAGCTGAATCGTCGCAAG GACATGCTTGCAAGTTTGAGATCAAGAGTTAACGAGATGGCTTCCACGTTGAGCATGCCAAATTTTTCCAACAGGGATAG TTTGTTTGGGCCAGAAATAAAGCCAGATGCAATGAGTAGGACCAATGGCCTGGACAACAAAGGAGTTATTGGACTTCAAC GACAAATTATGAAAGAACAAGATGAGGGCCTTGAGAAATTGGAGGAAAGTGTAACAAGCACAAAACATATTGCATTAGCT GTGAATGAAGAGCTGGATCTACACACGAGTCTCATTGATGACTTGGACCAACATGTAGATGTCACAGATTCTCGGCTTAG GCGTGTGCAGAAGAACTTGGCAGTTTTAAATAAACGAACCAACGGTGGTTGCTCCTGCTTGTGCATGCTTTTATCAGTGA TTGGCATAGTGGTTTTGGTTGTTGTCATTGGGCTGTTGGTCAAATATCTGTAA
Protein sequence (LotjaGi1g1v0022700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSSDSWVKEYNEAVKLADDISTMISERSSSVESGPEAQRHSSAIRRKITILGTRLDSLQSLLSKLPAGKSEKELNRRK DMLASLRSRVNEMASTLSMPNFSNRDSLFGPEIKPDAMSRTNGLDNKGVIGLQRQIMKEQDEGLEKLEESVTSTKHIALA VNEELDLHTSLIDDLDQHVDVTDSRLRRVQKNLAVLNKRTNGGCSCLCMLLSVIGIVVLVVVIGLLVKYL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 208 | 208 | - | – | |
| PANTHER | 1 | 223 | 223 | 1.8E-95 | – | |
| PANTHER | 1 | 223 | 223 | 1.8E-95 | – | |
| SUPERFAMILY | 126 | 195 | 70 | 2.13E-15 | – | |
| SMART | 129 | 196 | 68 | 2.0E-5 | ||
| ProSiteProfiles | 134 | 196 | 63 | 14.072 | ||
| Gene3D | 135 | 198 | 64 | 6.6E-17 | – | |
| CDD | 137 | 194 | 58 | 1.12031E-17 | – | |
| Pfam | 171 | 222 | 52 | 5.6E-10 | ||
| TMHMM | 205 | 227 | 23 | - | – | |
| Phobius | 209 | 227 | 19 | - | – | |
| Phobius | 228 | 230 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0022700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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