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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0023400 |
| Transcript ID | LotjaGi1g1v0023400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PHD-finger protein; TAIR: AT4G08990.1 DNA (cytosine-5-)-methyltransferase family protein; Swiss-Prot: sp|O83437|Y422_TREPA Uncharacterized protein TP_0422; TrEMBL-Plants: tr|I1JJE7|I1JJE7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0023400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2822063..2831264) extracted from Lotus japonicus Gifu genome v1.2.
CTCTCTCTATGGCTAATCGCTAGGGATTGCTCGCTCAGGTTTCACAACCTCACCTTCATCTCTCTCTCTCAAATTCAATT TACATTTCACGCTAAATTACTTACCCGCCAAAACAAACACACACACCCCTCTCTCAATTCAATTCAAATCTCTTCTCTCT TCTTCCTCTTCCCTCCTTCTCTCTCTCTCTCTAGGGTTTCTCTCTCATGGACGACCCTCCGCAACCCGCACCAGATCCTC CACCACCAATTCACAACGGAGTACTACTTCAACCCGAACCGGAATCGGAGGAGCGCTGCAGCAAGAAGCCCAAGCTAGAC GAACCGAATCCGAATCTCGACGACGGCGGCGCCGGTGGCGAATTGAAGCGAATCGCGGAGATTGTGCTGGTTCTTTCCAC GATGGCGGCGATGCGAGCGGGAAGGAAGCCAACCGGTGTGGAGGTTGATCTCATGAGGGAGGCTCGGACCAAGCTCGCGC ATCTCTGCCAAGGGATCGCTCCTAAGGATATTGTGGCCAGTGAAGCTATTGGTGCTGTCATTGAGGATCTTGGATTTAAT GCCAAGTTTAAGGATCAGAGGTTAGGGTTTCGAACTCCGAAAATGTCGATTGCTGAGAGGTACTCGCACGCTAAGTGGAA GGTATGCTACCAATTCTCTCAATTGTTGCCATTAGCTTCTTCAACTTCCATGTTTATTGCAGTAAGAAAAGCATGTAGTT GTATAATCTTGCTTGCTTTGACTAATGGATAATTGATCCATGTGAAACTGCGTTGTAATTGATGTTTAAGTAATGTTATG GTAGCATTTGGCATTGAGAGGACGAAACGGGGTGGTTTGTTCGGTTCTGTATTCTTTAATTCCACCCTTGTCACTTTTTT TTGTTTTTACCTTTTGTCAGTTCTGTTTTAACCTGTCTGTGAAATGCTATCTATGTATGTGTATTTTGGTTGTTGTGAAC ATAGTTAGTTTACCGAGTTCGAGATACACTCTGGTACATGGTATATGATGTGTGAAGAATTCGGTACGAGAGGGGTATAC ATAGTCGGTTCGCTATTTGGGTTCACGGTTCATTCTAAATTATTAATAGATACACTTATGTAAATTTTTTTAGGTGAGGG TTTCGAAGGTAAAGAGAAGTAGCGGTTAAACTCTTCATTTTTAAAAAGAAAAGCATTCATTTTCCAAGTAAATAGTATTT AATATTAAAACATATAATTAAGTTTAGGTGCAACTGACAAAAATGATATTTATTTTTCCCCAACCGACATCGGTATACGT AGATGATCAGTATTCCTTTTCCTTTTATCCAATGATTTAGACTAATCATTTTCGTTTCCAAGTAAGTATAAATAATTTTA AGTGCAATCATAAATACTCTATATCTTTCCCATAAACTCAGCAGGTAGTCTATGATTCTAAGCCTTTATTGCATTTCAAC AAGCAACCAACTTAAAAAAAAGAACTTGGAACACATAGTAGTCAATATAGCCGCTAGAGCGGCGTAGCGGGGCTCCCTGC CACTATTGCGATGAAATAGCGACACACTTCACAATAGCGGTCGTAGCGGCAGATCGCGGCGCTATATGGACGAAGGGAAA AATGACTCAAGCCCCTCGGTTTTAAAACGTTGGGAAACCTTTTTAGGGGCATTTTAGGACTTCTCAGGGCCATTTTAGGT CAAACTTGAAATAATGGAGCTTCATTCAGATTTGCAAATCCGACTTCTTTACCTTGCTTTTGAGTGGTTTTTAGTTGTGT GTTATTGTTCAAGACTTATGATTTTTATTTCTATTATGAATGTTATGAATTTTAGGCAATATTTGACATTGTTTGGCATT TATATGTATATAGTATTAAACTAGTAATTATATAAAAAATCTGAATAGCGGCCATCCCGCTATGCACTATCCCGCTATCC CACTTTTGGGGCCGGCCGCTATCCGGAAATGACTACTATGTTGGAACAATGGAACGTCAATATGAAGTACCGGGACGCGT ATTGCAGAGTAACAATTCGAAAAAGAACCTCGAACCAGCACGCACGAACTGGAACGCGGGTCCTGGGTTATAAGGCGAAT TGGGTAACTATGGTTGTGAATATATATTAGTTAAGAAAAAGAGGATAAGAATGTTGGATTCATACTCCATATTACTTCAA AATTAAGCTGCTTATTGTACAGTTATTTGTATTTCTTAATTTAGGGTTCTTTCTTTGGGAGGGTTATTGAAGAATAATGA ACTTTAAATTCTTGACTCGTGTATTGGATTAGTTTTCCCTTGATATTCTGTTTCCAGCGCCTCTCATAATAATCTTAAAC TACCTTCTTCGGTGGCCACCTGATGGAGGTTATTGGAGTGATGGATTCTGTTAATGTGAAAGGATTCTGTTTTTTTGGTT TCAGTGCTCATGTTAAGGCATTTATTTTGTTTATTTAAGTATGCATATAATGTTGACAATGATGCTGTGGCTGTTCTTTT TGATGAGTTCATTTCCCCTTTGTTTTCTCTTTCTACAATCTTTTTGGTTCCTAGATGGAGGAAGCAAAGAAGTTTTCTGC ACCTTCTACAACATATGCTTCTCAGCCCTTGCAAACAAGCATTGGCGGAACAGTTGATAATCGTGTGCCAACACATACTG TTCGAATGATAGCGTCTGATAAATCAAGCCATGCAGCAATCCCTTCTACAGGTACTGTAATGTCTATTCCTCCCCAAGTT TCTGTAGGGTCTTCTGCAGCATTGCAATATCAATCAACCAGCAATGAAGTGAGACCTCCAGTGGTTCCTGGTGTAATATC TAGTACTCACTTGGGGAGAAATCCATCTTCCGTAGCATTGCCCAAAGTTGAACACTCCCAGTTCAAAGTTGGCGGAGGAT CAAATGGGCCTCCTTATGTGCTGCAAGTTCAAGGTAATTTCCTCCAAATCTCCTCACCAGTTCCAACTTTCAAGGAGTGG TAGTTACATTTCCAATTGATGATTGATTACTAGTGCAATATGTTCTCACTTTATGATGGATTATACATGCTGACCTGAAT TTTGTTTTACTGTGATTTATAAAAATTTTAAACTAGATGTTCAAAATAAGGTGCTGGAATTGTGGTTATATACTTAGAGG AATTTCTTCTATGTAAGACATGGAATGATACATGAAGAACCTGAAAGTTCACTACGTGGGTGTATATCTCTTTTTTTTTT TTCAATGTTATTGGATGGATATAATCTACGAGCAATAGCTGTTAATGATTCATTGCCTTTCAAAAGTCTGAAATTCAATG ATTACTCCTCTTCTTTCAGTTGCCTTCTTTAACTTCCTATTGTCATTTTCTGCTTGTCTTTCTGACTTCATAGCTTGTGA GCTGGTATCCTAGTCTATTGTATGTTTAGAATAGAATGTGTATGAGTTTATATTAGTCATAGAAATGTGAACTGAATTTG GGAGTTTTTTTAAACTGTAGCAAATTCATCAGCAAACCAACCATTGGTGAATGCTCCAACATGGTCAATGCAGGCTCAAT CTTCATCTATGGCTAGAAGCACGTCAGAAAACAAGGTGCCTACTCTTAACTCTGCTAAGGTTGAAGTAGCAGCTGATGTA ACCATATCAAGGGCAGGGCCTCAAATAACAACAGATCAAAGCTTTAGACCATTTACTACTCAAACAGTGCCTGTGAATTT GTCAATTATGCACCAGCCCTTGCAGCCCTTGCAGGGCATGAACAGGGTTCAAGCTCCTGTGATTCCTAGTCATGCGGATA TTGCAAAGATTGTCCAGAAAGTGTTACTACCAAAACTTCCTGACCATCCCACATGGACTCCTCCCTCAAGGGATTATATG AATAAGGGTTTGACTTGTCAAATATGTGAGGTCACTGTCAATGAGGTTGATACTGTACTTCTCTGTGATGCTTGTGAAAA GGGATTTCACTTGAAGTGCCTGCCACCATCGGTCTTAAGAGGAATTCATAATAGAGTTGATTGGTACTGCATGAAGTGCT TGGGTTTAAGTGGTGGGAAGCCTTTGCCTCCAAAATATGGCCGTGTTATGAGATCCTCTAACACACCACCAAAATTGCCC TCTAATACAGACACTATTCAACCATCTTCAGAGAAGGAAGCAGGGAGCATAGATCCACAGGTCAGCCAGCAGTTGTTAAC AACAAATGGGAGCTCTGTCCAAGCTGTTTCCAGTGGCAATCATAGTGTCGAACCATCAGCTGACTCAATGACCCCAGATA TGAATGATATACAAGTTACCAACATTTCATCCAGCATTGAAACTATTGGTGAAAAGTCTGATCCAAACTTCTCTATGAAG TCTCTTAGTGCATCAGCTGACTCAAAGACCAGAGATATGAGTGATATACAAGTTACCAACATTTCATCCAGCATTGAAAC TATTGGTGAGAAGTCTGATCCTAACATCTCTATGAAGTCTCTCAGTGCATCAGCTGACTCAAAGACCAGAGATATGAGCG ATATACAAGTTACCAACATTTCATCCAGCATTGAAACTATTGGTGAGAAGTCTGATCCAAACATCTCTATGAAGTCTCTC AGTGCATCAGCTGACTCAAAGACCAGAGATATGAGCGATATACAAGTTACCAACATTTCATCCAGCATTGAAACTATTGG TGAGAAGTCTGATCCAAACATCTCTATGAAGTCCCTTAGTGCATCAGCTGACTCAAAGACCTCAGATATGAATGATATAC AAGTTACCAACATTTCATCCAGCATTGAAACTATTGGTGAGAAGTCTGATCCAAACATCTCTACGAAGTCCCTTAGTGCA TCAGCTGACTCAAAGGCCCCAGATATGAGTGATATACAAGTTACCAACATTTCATCCAGTATTGAAACTATTGGTGAGAA GTCTGATCCAAACATCTCTATGAAGTCCCTTAGTGCATCGGCTGACTCAAAGACCAGAGATATGAGCGATATACAAGTTA CCAACATTTCATCCAGCATTGAAACTATTGGTGAGAAGTCTGATTCAAACATCTCTATGAATTCCCTTAGTGCAGCTTCT AGTCCTTCCACCGGCTTGCAAAGTGAAAGCTCTCAACAAATAAATTCTAAGGCTTTGATCTGTAAAGAGACATCAGAATC TGAAACTCTTCCTATATTATCTGAGCCGGCTAAATGTGAAAATTTGCAACCATCACAAGATTTTCAAGTGGAGCAGACAG AGTCACAAGACAATGCTGAAGTATCATCAGATAAACATGTTAACAGTACTTGTATGACTAGGGAACAAAAGGAATCTCAT GGAGGAGAAAATTTAACTTATGATAGTAAGCCTGATGACCTAGATGTCGCACAAGCAAATTTTATTGGAGGTTCTGAAAC TATTGCTGAAGGTAGACAACACTCTGCATTATCTTCAGATAGCTCACATGCTGTAGAATGGATTGGTGATGTTTTACAAG TTGTAGATGAGAAAAAGTTTTACCAATCTTGCTCTGTCAATGGAATAACGTATAGGCTGCAGGATCATGCTCTTTTTCCA TCCAGCCATGGCAAATTAACACCTTCTAAAATTCAGGCAAGCAAATCATCATGCTTTCCACTATAGTCTTGCAATTGGTT ACATAATATCTGTATAAGTTTGCCTTTGAAATCGCAAAGTGCTTATGAATCCCAAAATGACGTGTTTTGGGTGCACCTTA CAGTTTCTGTTGTGATTTGTTGGTTTGCACCCTTGTGTTAAAAAGTAGCACTTTATAAATTCATTGAACTTTAACAGAGA CTTATTTCTATTTAATTTTCAGTCTATGTGGGAAGATTGCAAAACTGGGTTAAATTGGGTTAAGGTGACAAACTGCTACT TTCCTGACAATTTGCCAGGGAATATTAGTCACCCGTGTATATCTGAAGTCAATGAGGTAACTTTTTTTTAATTTTCATAA TGCATTTTTATGTTTAAATAGGCTTGTGTCTTTCTTCTTGAATGGTTATCAGTTCAATCTTGTGTGACAATTTGTCATTG ATATATTAACTATCAGTTTGTCTTAAGGTGCATTGATTTTGGTCATACATACAAGCATATTCATAAACTGTTTATTGATT TGAGTTATAACCTCTACAATCAATTTCTGTTTTGATTGGCTTTCCAATCAAATGGTAATGCTCCACATCTTAGACATGCT CATCAAACCATATATTGCATATGGATATTTTCTTTGGTCCAGGTTTATGAATCTAATAGTGACAGAACGGAAATGCTTGG CTCTATTCAAGGCCCGTGTGAAGTCCTTCCATCAGATAAGTTTAAACAAGAAAATGACAGGCGATGTCAGTTAGAAAATG AGCCAAGTGCTAGAGTACAGCCCATTTTCCTTTGCAGGTTTGTTTCTGTATACACCTATTATTCTAGACTCTCTTTTTTT TTTCAAGCCCGTTTCATTCAATTTATACAATTTTCGTATAACATAAGCAAGCATGAAGAAATATGTTTGCAATTTATCAT GTGCGTTATGTGGTCATAATTACAACAGAAGGGAAATGGTAGAGTAGGACTAAAGGAAAAATTGGGACTCTGGGATATGA AATTATGTTAATTTAATTTTGATTCTATTTCCTAAATCATGTTAATTTTGTGTGTTGGCATTGAAGTTGGGATTATACAC TACACAGATAATGTTAATGGATTAGATGTAAGTATATAGCTGCCTATATTTGGTGTTGTTTTGCATAATGATGATTTCCA ACATTTGGTTTTTGCCTGCTGAAATTTTGAACTTATGTTTCTTAGGGACATTGTTCTCTGGGAACTAAATCTGGGTGTGT GTGTGTCTGGATTTGTAAGATGGTAAGAGGCTGTAGTCAGATGTTACAATAGCTATTCCTTGGTGCATGATATATTTACA TATGGTTGAATGGGGAAATAAGGGCTTATTAAGATGATGGCTATCTAGCTGTTGATCTGAGAACAGGTTTCAAGGTTAAG GTTCTCTGGTTAAGTGATACTTTATGCGTAGGACTGCATACATGGTGTTCCTAGAAAGCCTCTTTTGGAAAGGAAAAGAG GATAAAGAAAGAAAAAAAACCCTTACTTTCAAATCTTTGAGTGCGCTGGGGACAGCAGGGAATGGAAAACAAGATTTTAA ACTGAGATAAAATGCTTTTCATCATCAATTAAGTTATTGATAAGTGGTGAAAATTTGAAGCACACTTCCATGCTGCTTGC CAATGACTGAGCATTAAGAAATGCCATATTTTTAATACTTCAACCTAATTCCAATGTTTAATATTACATTGGCACTCATC CCATTTTTAGATGTAATTATTTCCATAGCATTATGAAAGCTGTTCTATTTTCATTCTTGTTCCTTTTGTTTATTGCATTA TTTCACATGTTTTAGATGCTAGACTTTTGGTGTTCAGAATCAAATATATAATTCATACAGGTTTCTACATTCAGTATCAG TGTAGCTGTGTAGGTATTGTATTCAGTTCGTATGCTTGCCAAATCACTTATCAGTCAGGACAACATTTGAATCTCCCTAT CTGACAGCGTATTGCTTTGTAGATTTGTCTTTTTTGGGTTTTCAGAGGGATTTGATTGGTTTTGCAGGTGGTTTTATGAT GAAATCAAAAGTTTTTTTCAACCAGTTACCAGTTGATTCTGTATTGGACATAAATCTTTCCCGATTCCTACACTGCATTT TTGTGGTGAGTATTTGACACCTGTTATCTGTCCATTTTTTTAACTGAGACTTTCTTTACCCTAATATCTACCAAATCTTT GAAATCTAACCCGGTAGATCACTTGTGTGCCCTGATAAAGTTGTAGGTACATTGAACTCGGGGTAATATGAATGAATTTG GCTTGAATTATTGTTTAGAGGTGCTGGAGCCTCTGTAAACTCAACTCATAAACGTTAGAGTTTACCTTATTTAAAAAATA TTAAAAAATGCATTGAATTCAAACATAATATAACAGCTTGTCTAGAATCAACCTTCTACAACTCTATAATGAAGCAAACG AGAGAAAATTATTTGGAAATTTGGGATAATGATCATAACATATAAACAAGTAGAACTTCATAGTTGTTCAAAACAGAAAT TGGTCTACTGTTCTAATGGTTTCACACTTTATAGTGGGAATGCCATAACAAATATAGAAACTGAGATAAATCTCGTGCTA GACTGCTAATGCCGTATGCAAATTTTGGGACCAAAAACATTACATAGAAACAGTGAGATAGGGTCCCTGGACAGGGTAAT TTTTTTAGAGAGAGATACATGCGCCAGAAAATGACTCAAGCATTGAACAGACGAAAAGAGGGAGGAAGCAACCCGCTTGA TTCACTTGTTAAATTATTACCACCATTTCCACTTCATAAACATAAAGTTGTGAATTTACTTTTCCTATACATAACTACTT CTTTTCTCTTGTTTCCATCTTCCCTTAATTAATGATAAAATCTTATACCATAGTCACTAGATAAATTGAAGCATGCATAA CGTTTTGGCGTTTCAGAAACACTAGGGACTTTGCAGTTTTTGATTATCCGGTTACCTTGTGTGGATGCAGGTATTTTAGG TGTTTCAGACAGGATCTTTCTTGTATGGATACTTGAGGTTCATGTGAGACCCATTCTAAGGCACATTGAAGCAGCATTGC CTCCGCGCCTGCAACGATGCAGCATGAAATATGTTTGATGTAAAATATGTAAGCTGAAGCTGAGCCTGTAATTGCTGAGT TTAGCTTTAGTTATGATAGTAGTGCTGTTCCTAATTCATTCTGTATAATTCTTTTTTGGGCACTTAGGGTTGCTAAATCG CGTTATTATCTCTGAAATTAAATTATCAGTGTAGTCCTCTTAGTTTGCTGGAATTGTATAATATTTCGTTTGTACAAAAG CCATTGGAATTTTGGACAGCAGTTTAGGGCCTGTTTGGTTTAACTTCTAATTATATGGATTTTCTCACTCAAATGTCGTC TTCAAACAGTGAGTTTAGTATACAGAATCCGCCTGCAATTTTGGTTTATCAAGACGATTCATTGAACATTTGATATCTTC CAAACTACTTCCTTTTCACCTGTTTCTTTTTTCATGTTTATAATCATTTAAAATAACCAATCAATTAATTAAACATTCGA GTCAATGGTTTAGTGAAATTAATATTTTCATATAGTATTGATTAGTTAAGATTCGGATCTCTTTGTCATCTTCAAGTGTC AC
CDS sequence (LotjaGi1g1v0023400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGGAAGATTGCAAAACTGGGTTAAATTGGGTTAAGGTGACAAACTGCTACTTTCCTGACAATTTGCCAGGGAATAT TAGTCACCCGTGTATATCTGAAGTCAATGAGGTTTATGAATCTAATAGTGACAGAACGGAAATGCTTGGCTCTATTCAAG GCCCGTGTGAAGTCCTTCCATCAGATAAGTTTAAACAAGAAAATGACAGGCGATGTCAGTTAGAAAATGAGCCAAGTGCT AGAGTACAGCCCATTTTCCTTTGCAGGTGGTTTTATGATGAAATCAAAAGTTTTTTTCAACCAGTTACCAGTTGA
Protein sequence (LotjaGi1g1v0023400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWEDCKTGLNWVKVTNCYFPDNLPGNISHPCISEVNEVYESNSDRTEMLGSIQGPCEVLPSDKFKQENDRRCQLENEPSA RVQPIFLCRWFYDEIKSFFQPVTS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 101 | 101 | 2.0E-46 | – | |
| PANTHER | 1 | 101 | 101 | 2.0E-46 | – | |
| ProSiteProfiles | 1 | 103 | 103 | 9.989 | ||
| Gene3D | 1 | 104 | 104 | 5.9E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Chromatin binding | Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. |
Expression pattern of LotjaGi1g1v0023400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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