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GO:0003682

View this GO term in other databases

Overview

Field Value
Namespace Molecular function
Short description Chromatin binding
Full defintion Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
Subterm of

Relationships

The relationship of GO:0003682 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCjl
ISBN
Oxford Dictionary of Biochemistry and Molecular BiologyOxford Dictionary of Biochemistry and Molecular Biology

Anthony David Smith,Anthony Donald Smith · ISBN: 0198506732

Oxford University Press, USA, 2000 · 760 pages

This book provides a survey of current biochemistry and molecular biology in the form of a dictionary. It contains short but informative entries arranged under more than 17,000 headwords, providing fundamental but up-to-date information that is often difficult to locate in today'soverspecialized world. The book is intended as a handy reference of first resource for those seeking information outside their immediate knowledge area or for those who need to refresh their memory of fundamental knowledge. It gives the meanings of many terms used in molecular biology and describes the essential featuresof over approximately 2,000 enzymes and proteins, describing the reactions they catalyse or functions they perform, and includes filenames that facilitate the location of entires in databases of sequences. Many entries describe chemical compounds of relevance to biochemists, with approximately 950symbols and abbreviations. In addition, many physico-chemical laws, constants, and formulae are detailed. This revised edition has been fully up-dated in order to include the new information that has been discovered since the original edition was published in 1997.

PMID
Characterization of the RNA content of chromatin.Mondal T, Rasmussen M, Pandey GK, Isaksson A, Kanduri C
Genome Res. 2010 Jul; 20 (7): 899–907.PMID: 20404130

Noncoding RNA (ncRNA) constitutes a significant portion of the mammalian transcriptome. Emerging evidence suggests that it regulates gene expression in cis or trans by modulating the chromatin structure. To uncover the functional role of ncRNA in chromatin organization, we deep sequenced chromatin-associated RNAs (CARs) from human fibroblast (HF) cells. This resulted in the identification of 141 intronic regions and 74 intergenic regions harboring CARs. The intronic and intergenic CARs show significant conservation across 44 species of placental mammals. Functional characterization of one of the intergenic CARs, Intergenic10, revealed that it regulates gene expression of neighboring genes through modulating the chromatin structure in cis. Our data suggest that ncRNA is an integral component of chromatin and that it may regulate various biological functions through fine-tuning of the chromatin architecture.

Associated Lotus transcripts 106

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0024609.1
– PREDICTED: DNA (cytosine-5)-methyltransferase CMT2-like [Cicer arietinum] gi|502154028|ref|XP_004509555.1|
GO terms
1
Lj0g3v0024609.2
– PREDICTED: DNA (cytosine-5)-methyltransferase CMT2-like [Cicer arietinum] gi|502154028|ref|XP_004509555.1|
GO terms
1
Lj0g3v0060049.1
– Agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] gi|22327858|ref|NP_200371.2|
GO terms
1
Lj0g3v0087639.1
– PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Glycine max] gi|356543233|ref|XP_003540067.1|
GO terms
1
Lj0g3v0103099.1
– Agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] gi|22327858|ref|NP_200371.2|
GO terms
1
Lj0g3v0173019.1
– PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Glycine max] gi|356516937|ref|XP_003527148.1|
GO terms
1
Lj0g3v0198479.1
– PREDICTED: DNA (cytosine-5)-methyltransferase CMT3-like isoform X2 [Cicer arietinum] gi|502164095|ref|XP_004513047.1|
GO terms
1
Lj0g3v0231269.1
– PREDICTED: UPF0396 protein-like, partial [Cicer arietinum] gi|502097159|ref|XP_004490924.1|
GO terms
1
Lj0g3v0251499.1
– Os09g0346900 [Oryza sativa Japonica Group] gi|115478697|ref|NP_001062942.1|
GO terms
1
Lj0g3v0308579.1
– PREDICTED: DNA (cytosine-5)-methyltransferase CMT3-like isoform X2 [Cicer arietinum] gi|502164095|ref|XP_004513047.1|
GO terms
1
Lj0g3v0328459.1
– DNA (cytosine-5)-methyltransferase [Medicago truncatula] gi|357498929|ref|XP_003619753.1|
GO terms
1
Lj0g3v0332199.1
– Chain B, Crystal Structure Of Shh1 Sawadee Domaingi|485601914|pdb|4IUQ|A Chain A, Crystal Structure Of Shh1 Sawadee Domaingi|485601915|pdb|4IUR|B Chain B, Crystal Structure Of Shh1 Sawadee Domain In Complex With H3k9me3 Peptidegi|485601917|pdb|4IUR|A Chain A, Crystal Structure Of Shh1 Sawadee Domain In Complex With H3k9me3 Peptidegi|485601918|pdb|4IUT|A Chain A, Crystal Structure Of Shh1 Sawadee Domain In Complex With H3k9me2 Peptidegi|485601919|pdb|4IUT|B Chain B, Crystal Structure Of Shh1
GO terms
1
Lj1g3v0415250.1
– BAH domain,TFIIS helical bundle-like domain isoform 1 [Theobroma cacao] gi|508773378|gb|EOY20634.1|
GO terms
1
Lj1g3v1290440.1
– PREDICTED: DNA (cytosine-5)-methyltransferase CMT3-like isoform X2 [Cicer arietinum] gi|502164095|ref|XP_004513047.1|
GO terms
1
Lj1g3v2035300.1
– Bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] gi|334187617|ref|NP_196708.5|
GO terms
1
Lj1g3v3330510.1
– Phospholipase-like protein (PEARLI 4) family [Arabidopsis thaliana] gi|18398247|ref|NP_565397.1|
GO terms
2
Lj1g3v3330510.2
– Phospholipase-like protein (PEARLI 4) family [Arabidopsis thaliana] gi|18398247|ref|NP_565397.1|
GO terms
2
Lj1g3v3330510.3
– Phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana] gi|145334227|ref|NP_001078494.1|
GO terms
2
Lj1g3v3381180.1
– PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Glycine max] gi|356516937|ref|XP_003527148.1|
GO terms
1
Lj2g3v1019790.1
– PREDICTED: serine-rich adhesin for platelets-like isoform X1 [Cicer arietinum] gi|502090725|ref|XP_004489321.1|
GO terms
1
Lj2g3v1079580.1
– PREDICTED: nipped-B-like protein-like [Cicer arietinum] gi|502091147|ref|XP_004489457.1|
GO terms
2
Lj2g3v1079580.2
– PREDICTED: nipped-B-like protein-like [Cicer arietinum] gi|502091147|ref|XP_004489457.1|
GO terms
2
Lj2g3v1155580.1
– Agenet and bromo-adjacent homology (BAH) domain-containing protein-like protein [Medicago truncatula] gi|357488501|ref|XP_003614538.1|
GO terms
1
Lj2g3v1646590.1
– PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Glycine max] gi|356540854|ref|XP_003538899.1|
GO terms
1
Lj2g3v1646590.2
– PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Glycine max] gi|356495335|ref|XP_003516534.1|
GO terms
1
Lj2g3v2017700.1
– BAH and coiled-coil domain-containing protein [Medicago truncatula] gi|357481593|ref|XP_003611082.1|
GO terms
1
Lj2g3v3222880.1
– PHD finger protein [Medicago truncatula] gi|357494725|ref|XP_003617651.1|
GO terms
1
Lj3g3v0116130.1
– Nucleic acid binding protein [Arabidopsis thaliana] gi|334185373|ref|NP_001189902.1|
GO terms
1
Lj3g3v0428780.1
– PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Glycine max] gi|356543233|ref|XP_003540067.1|
GO terms
1
Lj3g3v0428880.1
– Sequence-specific DNA binding protein [Arabidopsis lyrata subsp]. lyrata] gi|297834744|ref|XP_002885254.1|
GO terms
1
Lj3g3v0428920.1
– Sequence-specific DNA binding protein [Arabidopsis lyrata subsp]. lyrata] gi|297834744|ref|XP_002885254.1|
GO terms
1
Lj3g3v1010970.1
– DNA (cytosine-5)-methyltransferase [Medicago truncatula] gi|357498929|ref|XP_003619753.1|
GO terms
1
Lj3g3v1010980.1
–
GO terms
1
Lj3g3v1684630.1
– PREDICTED: origin recognition complex subunit 1-like [Glycine max] gi|356557695|ref|XP_003547149.1|
GO terms
1
Lj4g3v0974400.1
– Os01g0610300 [Oryza sativa Japonica Group] gi|115438452|ref|NP_001043543.1|
GO terms
1
Lj4g3v2962330.1
– BAH and coiled-coil domain-containing protein [Medicago truncatula] gi|357481593|ref|XP_003611082.1|
GO terms
1
Lj4g3v2962330.2
– BAH and coiled-coil domain-containing protein [Medicago truncatula] gi|357481593|ref|XP_003611082.1|
GO terms
1
Lj5g3v0866940.1
– Sequence-specific DNA binding transcription factor [Arabidopsis thaliana] gi|22331151|ref|NP_188467.2|
GO terms
1
Lj5g3v0867080.1
– Sequence-specific DNA binding protein [Arabidopsis lyrata subsp]. lyrata] gi|297834744|ref|XP_002885254.1|
GO terms
1
Lj5g3v0978430.1
– PREDICTED: UPF0396 protein-like [Cicer arietinum] gi|502115401|ref|XP_004495195.1|
GO terms
1
Lj5g3v2244560.1
– At2g16900/F12A24.8 [Arabidopsis lyrata subsp]. lyrata] gi|297836406|ref|XP_002886085.1|
GO terms
2
Lj5g3v2244560.2
– Phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana] gi|15236270|ref|NP_195237.1|
GO terms
2
Lj6g3v0215820.1
– Rubisco methyltransferase family protein [Theobroma cacao] gi|508701647|gb|EOX93543.1|
GO terms
1
Lj6g3v0215820.2
– Rubisco methyltransferase family protein [Theobroma cacao] gi|508701647|gb|EOX93543.1|
GO terms
1
Lj6g3v0775960.1
– Agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] gi|22327858|ref|NP_200371.2|
GO terms
1
Lj6g3v0775960.3
– Agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] gi|22327858|ref|NP_200371.2|
GO terms
1
LotjaGi1g1v0023400.1
– PHD-finger protein; TAIR: AT4G08990.1 DNA (cytosine-5-)-methyltransferase family protein; Swiss-Prot: sp|O83437|Y422_TREPA Uncharacterized protein TP_0422; TrEMBL-Plants: tr|I1JJE7|I1JJE7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0023400
GO terms
1
LotjaGi1g1v0126100_LC.1
– Protein sawadee homeodomain-like 2; TAIR: AT1G15215.2 SAWADEE HOMEODOMAIN protein; Swiss-Prot: sp|Q9XI47|SHH1_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 1; TrEMBL-Plants: tr|I3SAF7|I3SAF7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0126100_LC
GO terms
1
LotjaGi1g1v0126200_LC.1
– Protein sawadee homeodomain-like 2; TAIR: AT1G15215.2 SAWADEE HOMEODOMAIN protein; Swiss-Prot: sp|Q9XI47|SHH1_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 1; TrEMBL-Plants: tr|I3SAF7|I3SAF7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0126200_LC
GO terms
1
LotjaGi1g1v0126400_LC.1
– Protein SAWADEE HOMEODOMAIN-like protein 1; TAIR: AT3G18380.1 DNA-BINDING TRANSCRIPTION FACTOR 2; Swiss-Prot: sp|Q8RWJ7|SHH2_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 2; TrEMBL-Plants: tr|I3SAF7|I3SAF7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0126400_LC
GO terms
1
LotjaGi1g1v0126600_LC.1
– Protein sawadee homeodomain-like 2; TAIR: AT1G15215.2 SAWADEE HOMEODOMAIN protein; Swiss-Prot: sp|Q9XI47|SHH1_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 1; TrEMBL-Plants: tr|I3SAF7|I3SAF7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0126600_LC
GO terms
1
LotjaGi1g1v0126600_LC.2
– Protein sawadee homeodomain-like 1; TAIR: AT1G15215.2 SAWADEE HOMEODOMAIN protein; Swiss-Prot: sp|Q9XI47|SHH1_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 1; TrEMBL-Plants: tr|I3SAF7|I3SAF7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0126600_LC
GO terms
1
LotjaGi1g1v0126600_LC.3
– Protein sawadee homeodomain-like 1; TAIR: AT1G15215.3 SAWADEE HOMEODOMAIN protein; Swiss-Prot: sp|Q9XI47|SHH1_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 1; TrEMBL-Plants: tr|I1KGJ4|I1KGJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0126600_LC
GO terms
1
LotjaGi1g1v0183300.1
– BAH domain-containing protein, putative; TAIR: AT3G48050.1 protein SUO; Swiss-Prot: sp|F4KFC7|MD26C_ARATH Probable mediator of RNA polymerase II transcription subunit 26c; TrEMBL-Plants: tr|K7KVT9|K7KVT9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0183300
GO terms
1
LotjaGi1g1v0398900.1
– Bromo-adjacent-like (BAH) domain protein; TAIR: AT5G11470.1 bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|Q9LYE3|ASI1_ARATH Protein ANTI-SILENCING 1; TrEMBL-Plants: tr|V7AU44|V7AU44_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0398900
GO terms
1
LotjaGi1g1v0398900.2
– Bromo-adjacent-like (BAH) domain protein; TAIR: AT5G11470.1 bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|Q9LYE3|ASI1_ARATH Protein ANTI-SILENCING 1; TrEMBL-Plants: tr|A0A151TDS8|A0A151TDS8_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0398900
GO terms
1
LotjaGi1g1v0408600.1
– Protein sawadee homeodomain-like 1; TAIR: AT1G15215.2 SAWADEE HOMEODOMAIN protein; Swiss-Prot: sp|Q9XI47|SHH1_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 1; TrEMBL-Plants: tr|I3T1R4|I3T1R4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0408600
GO terms
1
LotjaGi1g1v0564200.1
– BAH-PHD domain-containing protein; TAIR: AT4G39100.1 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|Q9FEN9|SHL_ARATH Chromatin remodeling protein SHL; TrEMBL-Plants: tr|I1K738|I1K738_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0564200
GO terms
1
LotjaGi2g1v0168300.1
– Cytosine-specific methyltransferase; TAIR: AT5G49160.1 methyltransferase 1; Swiss-Prot: sp|P34881|DNMT1_ARATH DNA (cytosine-5)-methyltransferase 1; TrEMBL-Plants: tr|I1JXB2|I1JXB2_SOYBN Cytosine-specific methyltransferase; Found in the gene: LotjaGi2g1v0168300
GO terms
1
LotjaGi2g1v0168300.3
– Cytosine-specific methyltransferase; TAIR: AT5G49160.1 methyltransferase 1; Swiss-Prot: sp|P34881|DNMT1_ARATH DNA (cytosine-5)-methyltransferase 1; TrEMBL-Plants: tr|I1KCC0|I1KCC0_SOYBN Cytosine-specific methyltransferase; Found in the gene: LotjaGi2g1v0168300
GO terms
1
LotjaGi2g1v0224800.1
– Cytosine-specific methyltransferase; TAIR: AT1G69770.1 chromomethylase 3; Swiss-Prot: sp|Q94F88|CMT3_ARATH DNA (cytosine-5)-methyltransferase CMT3; TrEMBL-Plants: tr|K7K149|K7K149_SOYBN Cytosine-specific methyltransferase; Found in the gene: LotjaGi2g1v0224800
GO terms
1
LotjaGi2g1v0249800.1
– BAH domain-containing protein; TAIR: AT3G48060.1 BAH and TFIIS domain-containing protein; Swiss-Prot: sp|F4KFC7|MD26C_ARATH Probable mediator of RNA polymerase II transcription subunit 26c; TrEMBL-Plants: tr|A0A0B2Q028|A0A0B2Q028_GLYSO Uncharacterized protein; Found in the gene: LotjaGi2g1v0249800
GO terms
1
LotjaGi2g1v0265500.1
– Nipped-B-like protein; TAIR: AT5G15540.1 PHD finger family protein; Swiss-Prot: sp|F5HSE3|NIPLA_DANRE Nipped-B-like protein A; TrEMBL-Plants: tr|K7LXL8|K7LXL8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0265500
GO terms
2
LotjaGi2g1v0278400.1
– Agenet domain-containing protein / bromo-adjacent domain-containing protein, putative; TAIR: AT1G68580.2 Agenet and bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|Q9FZD9|DUF3_ARATH DUF724 domain-containing protein 3; TrEMBL-Plants: tr|K7K2M6|K7K2M6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0278400
GO terms
1
LotjaGi2g1v0356800.1
– Cytosine-specific methyltransferase; TAIR: AT1G80740.1 chromomethylase 1; Swiss-Prot: sp|C0SQ89|CMT3_ORYSJ DNA (cytosine-5)-methyltransferase CMT3; TrEMBL-Plants: tr|I1J8E3|I1J8E3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0356800
GO terms
1
LotjaGi2g1v0434400.1
– Bromo-adjacent-like (BAH) domain protein; TAIR: AT4G11560.1 bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|G7KC24|G7KC24_MEDTR Bromo-adjacent-like (BAH) domain protein; Found in the gene: LotjaGi2g1v0434400
GO terms
1
LotjaGi3g1v0012600.1
– Bromo-adjacent-like (BAH) domain protein; TAIR: AT3G15605.4 nucleic acid binding protein; Swiss-Prot: sp|Q9LYE3|ASI1_ARATH Protein ANTI-SILENCING 1; TrEMBL-Plants: tr|K7M3X0|K7M3X0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0012600
GO terms
1
LotjaGi3g1v0012600.2
– Bromo-adjacent-like (BAH) domain protein; TAIR: AT3G15605.4 nucleic acid binding protein; Swiss-Prot: sp|Q9LYE3|ASI1_ARATH Protein ANTI-SILENCING 1; TrEMBL-Plants: tr|K7M3X0|K7M3X0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0012600
GO terms
1
LotjaGi3g1v0043800.1
– BAH-PHD domain-containing protein; TAIR: AT4G22140.2 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|I1M332|I1M332_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0043800
GO terms
1
LotjaGi3g1v0043800.2
– PHD finger family protein / bromo-adjacent (BAH) domain-containing protein isoform 1; TAIR: AT4G22140.2 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|K7KWV9|K7KWV9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0043800
GO terms
1
LotjaGi3g1v0043800.3
– BAH-PHD domain-containing protein; TAIR: AT4G22140.2 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|I1M332|I1M332_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0043800
GO terms
1
LotjaGi3g1v0043800.4
– BAH-PHD domain-containing protein; TAIR: AT4G22140.1 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|I1M332|I1M332_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0043800
GO terms
1
LotjaGi3g1v0043800.5
– BAH-PHD domain-containing protein; TAIR: AT4G22140.1 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|A0A0B2RYF3|A0A0B2RYF3_GLYSO BAH and coiled-coil domain-containing protein 1; Found in the gene: LotjaGi3g1v0043800
GO terms
1
LotjaGi3g1v0043800.6
– BAH-PHD domain-containing protein; TAIR: AT4G22140.1 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|A0A1J7FWH1|A0A1J7FWH1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0043800
GO terms
1
LotjaGi3g1v0044200.1
– DNA-BINDING TRANSCRIPTION FACTOR 2; TAIR: AT3G18380.1 DNA-BINDING TRANSCRIPTION FACTOR 2; Swiss-Prot: sp|Q8RWJ7|SHH2_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 2; TrEMBL-Plants: tr|G7LDQ2|G7LDQ2_MEDTR Sequence-specific DNA-binding transcription factor; Found in the gene: LotjaGi3g1v0044200
GO terms
1
LotjaGi3g1v0044300.1
– Protein sawadee homeodomain-like 2; TAIR: AT3G18380.1 DNA-BINDING TRANSCRIPTION FACTOR 2; Swiss-Prot: sp|Q8RWJ7|SHH2_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 2; TrEMBL-Plants: tr|A0A0B2PMB5|A0A0B2PMB5_GLYSO Uncharacterized protein; Found in the gene: LotjaGi3g1v0044300
GO terms
1
LotjaGi3g1v0150100.1
– Cytosine-specific methyltransferase; TAIR: AT5G49160.1 methyltransferase 1; Swiss-Prot: sp|P34881|DNMT1_ARATH DNA (cytosine-5)-methyltransferase 1; TrEMBL-Plants: tr|I1JXB2|I1JXB2_SOYBN Cytosine-specific methyltransferase; Found in the gene: LotjaGi3g1v0150100
GO terms
1
LotjaGi3g1v0150100.2
– Cytosine-specific methyltransferase; TAIR: AT5G49160.1 methyltransferase 1; Swiss-Prot: sp|P34881|DNMT1_ARATH DNA (cytosine-5)-methyltransferase 1; TrEMBL-Plants: tr|I1KCC0|I1KCC0_SOYBN Cytosine-specific methyltransferase; Found in the gene: LotjaGi3g1v0150100
GO terms
1
LotjaGi3g1v0154700.1
– BAH-PHD domain-containing protein; TAIR: AT4G22140.2 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|I3S5U2|I3S5U2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0154700
GO terms
1
LotjaGi3g1v0154700.2
– BAH-PHD domain-containing protein; TAIR: AT4G22140.1 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|I3S5U2|I3S5U2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0154700
GO terms
1
LotjaGi3g1v0154700.3
– BAH-PHD domain-containing protein; TAIR: AT4G22140.1 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|I3S5U2|I3S5U2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0154700
GO terms
1
LotjaGi3g1v0183600_LC.1
– Protein sawadee homeodomain-like 2; TAIR: AT1G15215.3 SAWADEE HOMEODOMAIN protein; Swiss-Prot: sp|Q9XI47|SHH1_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 1; TrEMBL-Plants: tr|I3SAF7|I3SAF7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0183600_LC
GO terms
1
LotjaGi3g1v0183600_LC.2
– Protein sawadee homeodomain-like 1; TAIR: AT1G15215.2 SAWADEE HOMEODOMAIN protein; Swiss-Prot: sp|Q9XI47|SHH1_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 1; TrEMBL-Plants: tr|I3SAF7|I3SAF7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0183600_LC
GO terms
1
LotjaGi3g1v0287800.1
– Origin recognition complex subunit 1; TAIR: AT4G14700.1 origin recognition complex 1; Swiss-Prot: sp|Q710E8|ORC1A_ARATH Origin of replication complex subunit 1A; TrEMBL-Plants: tr|I1M507|I1M507_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0287800
GO terms
1
LotjaGi3g1v0287800.2
– Origin recognition complex subunit 1; TAIR: AT4G14700.1 origin recognition complex 1; Swiss-Prot: sp|Q710E8|ORC1A_ARATH Origin of replication complex subunit 1A; TrEMBL-Plants: tr|I1M507|I1M507_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0287800
GO terms
1
LotjaGi3g1v0287800.3
– Origin recognition complex subunit 1; TAIR: AT4G14700.1 origin recognition complex 1; Swiss-Prot: sp|Q710E8|ORC1A_ARATH Origin of replication complex subunit 1A; TrEMBL-Plants: tr|I1M507|I1M507_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0287800
GO terms
1
LotjaGi3g1v0370500_LC.1
– Protein sawadee homeodomain-like 1; TAIR: AT1G15215.2 SAWADEE HOMEODOMAIN protein; Swiss-Prot: sp|Q9XI47|SHH1_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 1; TrEMBL-Plants: tr|I3SAF7|I3SAF7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0370500_LC
GO terms
1
LotjaGi3g1v0370500_LC.2
– Protein sawadee homeodomain-like 1; TAIR: AT1G15215.3 SAWADEE HOMEODOMAIN protein; Swiss-Prot: sp|Q9XI47|SHH1_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 1; TrEMBL-Plants: tr|I3SAF7|I3SAF7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0370500_LC
GO terms
1
LotjaGi3g1v0370700_LC.1
– Protein sawadee homeodomain-like 2; TAIR: AT1G15215.2 SAWADEE HOMEODOMAIN protein; Swiss-Prot: sp|Q9XI47|SHH1_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 1; TrEMBL-Plants: tr|I3SAF7|I3SAF7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0370700_LC
GO terms
1
LotjaGi4g1v0146500.1
– Cytosine-specific methyltransferase; TAIR: AT4G19020.1 chromomethylase 2; Swiss-Prot: sp|Q94F87|CMT2_ARATH DNA (cytosine-5)-methyltransferase CMT2; TrEMBL-Plants: tr|A0A0B2PQY3|A0A0B2PQY3_GLYSO Cytosine-specific methyltransferase; Found in the gene: LotjaGi4g1v0146500
GO terms
1
LotjaGi4g1v0146500.2
– Cytosine-specific methyltransferase; TAIR: AT4G19020.1 chromomethylase 2; Swiss-Prot: sp|Q94F87|CMT2_ARATH DNA (cytosine-5)-methyltransferase CMT2; TrEMBL-Plants: tr|A0A0B2PQY3|A0A0B2PQY3_GLYSO Cytosine-specific methyltransferase; Found in the gene: LotjaGi4g1v0146500
GO terms
1
LotjaGi4g1v0407700.1
– Cytosine-specific methyltransferase; TAIR: AT1G69770.1 chromomethylase 3; Swiss-Prot: sp|Q94F88|CMT3_ARATH DNA (cytosine-5)-methyltransferase CMT3; TrEMBL-Plants: tr|K7K149|K7K149_SOYBN Cytosine-specific methyltransferase; Found in the gene: LotjaGi4g1v0407700
GO terms
1
LotjaGi4g1v0425900.1
– Bromo-adjacent-like (BAH) domain protein; TAIR: AT4G11560.1 bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|A0A0S3QXP3|A0A0S3QXP3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0425900
GO terms
1
LotjaGi5g1v0122100.1
– Bromo-adjacent-like (BAH) domain protein; TAIR: AT5G11470.1 bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|Q9LYE3|ASI1_ARATH Protein ANTI-SILENCING 1; TrEMBL-Plants: tr|A0A151TDS8|A0A151TDS8_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0122100
GO terms
1
LotjaGi5g1v0168000_LC.1
– UPF0396 protein; TAIR: AT4G02720.1 Ras-induced vulval development antagonist protein; Swiss-Prot: sp|Q55ED4|NKAP_DICDI NKAP family protein; TrEMBL-Plants: tr|V7BJB8|V7BJB8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0168000_LC
GO terms
2
LotjaGi5g1v0181700.1
– Structural maintenance of chromosomes protein; TAIR: AT3G54670.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q6Q1P4|SMC1_ARATH Structural maintenance of chromosomes protein 1; TrEMBL-Plants: tr|A0A0S3SRB6|A0A0S3SRB6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0181700
GO terms
4
LotjaGi5g1v0181700.2
– Structural maintenance of chromosomes protein; TAIR: AT3G54670.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q6Q1P4|SMC1_ARATH Structural maintenance of chromosomes protein 1; TrEMBL-Plants: tr|A0A0S3SRB6|A0A0S3SRB6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0181700
GO terms
4
LotjaGi5g1v0181700.3
– Structural maintenance of chromosomes protein; TAIR: AT3G54670.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q6Q1P4|SMC1_ARATH Structural maintenance of chromosomes protein 1; TrEMBL-Plants: tr|A0A0B2P8J7|A0A0B2P8J7_GLYSO Structural maintenance of chromosomes protein; Found in the gene: LotjaGi5g1v0181700
GO terms
4
LotjaGi5g1v0181700.4
– Structural maintenance of chromosomes protein; TAIR: AT3G54670.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q6Q1P4|SMC1_ARATH Structural maintenance of chromosomes protein 1; TrEMBL-Plants: tr|I1LYK3|I1LYK3_SOYBN Structural maintenance of chromosomes protein; Found in the gene: LotjaGi5g1v0181700
GO terms
4
LotjaGi5g1v0181700.5
– Structural maintenance of chromosomes protein; TAIR: AT3G54670.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q6Q1P4|SMC1_ARATH Structural maintenance of chromosomes protein 1; TrEMBL-Plants: tr|A0A0S3SR98|A0A0S3SR98_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0181700
GO terms
4
LotjaGi5g1v0307200.1
– BAH-PHD domain-containing protein; TAIR: AT4G22140.2 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|A0A1J7FWH1|A0A1J7FWH1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0307200
GO terms
1
LotjaGi6g1v0024700.1
– N utilization substance protein B homolog; TAIR: AT4G25330.1 SAWADEE protein; Swiss-Prot: sp|A1S6X3|FADR_SHEAM Fatty acid metabolism regulator protein; TrEMBL-Plants: tr|K7LYC7|K7LYC7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0024700
GO terms
1
LotjaGi6g1v0038600.1
– Protein SAWADEE HOMEODOMAIN-like protein 1; TAIR: AT1G15215.2 SAWADEE HOMEODOMAIN protein; Swiss-Prot: sp|Q9XI47|SHH1_ARATH Protein SAWADEE HOMEODOMAIN HOMOLOG 1; TrEMBL-Plants: tr|A0A151SH36|A0A151SH36_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0038600
GO terms
1
LotjaGi6g1v0144600.1
– Agenet domain-containing protein / bromo-adjacent domain-containing protein, putative; TAIR: AT5G55600.1 Agenet and bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|Q9FZD9|DUF3_ARATH DUF724 domain-containing protein 3; TrEMBL-Plants: tr|A0A0B2NVF2|A0A0B2NVF2_GLYSO Uncharacterized protein; Found in the gene: LotjaGi6g1v0144600
GO terms
1
LotjaGi6g1v0284100.1
– Agenet domain-containing protein / bromo-adjacent domain-containing protein, putative; TAIR: AT5G55600.1 Agenet and bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4I8W1|DUF2_ARATH DUF724 domain-containing protein 2; TrEMBL-Plants: tr|K7LB84|K7LB84_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0284100
GO terms
1
LotjaGi6g1v0284100.2
– Agenet domain-containing protein / bromo-adjacent domain-containing protein, putative; TAIR: AT5G55600.1 Agenet and bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4I8W1|DUF2_ARATH DUF724 domain-containing protein 2; TrEMBL-Plants: tr|K7LB84|K7LB84_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0284100
GO terms
1

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0003682
Molecular function Chromatin binding 1 0.94