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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0024600 |
| Transcript ID | LotjaGi1g1v0024600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protease inhibitor/seed storage/lipid transfer protein family protein; TAIR: AT4G33550.2 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Swiss-Prot: sp|Q8W453|DIRL1_ARATH Putative lipid-transfer protein DIR1; TrEMBL-Plants: tr|I3SWN7|I3SWN7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0024600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2951765..2952531) extracted from Lotus japonicus Gifu genome v1.2.
TCTCAATTCTACACTGTTTGCACAACAGTTTCCGTCCGATTTCTAATAAATAAAAAATCATTTTCGACTTGAGAGAAGAG GTTTAGGCAATGAGGTGCTTCTTACCCTTCGCAATGTTGGTTTTGCTGGCTACAACCATTGTAGGCATCTCAGCTAAATC TGAATGCAAGATAGGAGCCATCATAAATCAATGTCAAAAATTCATTATAAAAGATGGGCCAAAAATCCCAACATCAAAGG CATGTTGTGAGGCCTTAAATGGTGCTGATATCCGTTGCTCATGCAAAATTATTTCCAAAGTCTTTGAGCGTTATTTTAGC GGAGAAAATTTTCTCCAGGCAGCTAAGTCTTGCGGAATCGAAGTCCCCCTCGGAACGAAGTGTGGAAGTAAGCTTTCAAC TCTTCTTGCTAATTTGGTGTAGTGCTAGTGAATATGATAACATTTCTTTCAACTCTATTTTTTTTCTCTTACAAGGTAGA AGTTGAATTAAATGGTGAATAAATTATTTGTACTTAATTATCATATATATATTTTTAATTATGAGATCTCTGATACTATT AATTACATGGTTCATTCAGATTATATTGTTGCTCCTTCTCCTTCTCCTTCTCCGGCTCCGGCTCCATCGACATGAAGTAC AACATTCAAGATGCATGAAGCTTCTATCAATAATTAAGCTACATGAATGTGTCTTTTTTTATACTATATATCTATTTGGG ATTGGAAGGATGTTATTTGAGTAAAGTAAAATCGATGTCATTTAAAG
CDS sequence (LotjaGi1g1v0024600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGTGCTTCTTACCCTTCGCAATGTTGGTTTTGCTGGCTACAACCATTGTAGGCATCTCAGCTAAATCTGAATGCAA GATAGGAGCCATCATAAATCAATGTCAAAAATTCATTATAAAAGATGGGCCAAAAATCCCAACATCAAAGGCATGTTGTG AGGCCTTAAATGGTGCTGATATCCGTTGCTCATGCAAAATTATTTCCAAAGTCTTTGAGCGTTATTTTAGCGGAGAAAAT TTTCTCCAGGCAGCTAAGTCTTGCGGAATCGAAGTCCCCCTCGGAACGAAGTGTGGAAATTATATTGTTGCTCCTTCTCC TTCTCCTTCTCCGGCTCCGGCTCCATCGACATGA
Protein sequence (LotjaGi1g1v0024600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRCFLPFAMLVLLATTIVGISAKSECKIGAIINQCQKFIIKDGPKIPTSKACCEALNGADIRCSCKIISKVFERYFSGEN FLQAAKSCGIEVPLGTKCGNYIVAPSPSPSPAPAPST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 22 | 22 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 22 | 22 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| PANTHER | 8 | 107 | 100 | 1.2E-23 | – | |
| PANTHER | 8 | 107 | 100 | 1.2E-23 | – | |
| Phobius | 15 | 22 | 8 | - | – | |
| Pfam | 18 | 98 | 81 | 9.5E-8 | ||
| Phobius | 23 | 117 | 95 | - | – | |
| Gene3D | 24 | 98 | 75 | 5.0E-9 | – | |
| SUPERFAMILY | 32 | 96 | 65 | 2.04E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0024600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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