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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0025000 |
| Transcript ID | LotjaGi1g1v0025000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene-responsive transcription factor, putative; TAIR: AT1G50640.1 ethylene responsive element binding factor 3; Swiss-Prot: sp|O80339|ERF82_ARATH Ethylene-responsive transcription factor 3; TrEMBL-Plants: tr|A0A0V0HV08|A0A0V0HV08_SOLCH Putative ethylene-responsive transcription factor 3-like; Found in the gene: LotjaGi1g1v0025000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2974262..2977033) extracted from Lotus japonicus Gifu genome v1.2.
GGACAAGAGAGGTCAGTTTGAGATCAGAAAATCAGGAAAATAAATTAAAAAAAGAGGAATAAAATAAAATAAATAGCATG CTGGAGACAGACAGAGCCAGAGAAAACCCTCATAGAGAAGAAAGAAAAGTAGCAAACACAAACACCACATCCATTTTTTT CATTATTAATATATTTTGGTGAGTGTTGTTGAAGAAGATGAGGTGGTGCTTCCTTCCACACCCTCTCTCTCTTCCCTCTC TGTTCTTCATCATCTCTAGAAAGACCCATCACCATTTTAAACTCTGAAATGCTTCTCTGACTTCAAAAAACTAATCTTTT CTCACTTTCATTATCTGGGTCTTCTTCCTTTTTCCATTCTCTCACATATTTGTATAGATCGGTGACGAGATGAAAAGAGG CAGAGGAGTAGCAGCTGCTGCTGCGGCGGCGATGGTGGTGGAGGTGAACGGATCGGCGGTGCTTAAGGAGCCACGCTACC GGGGCGTCAGGAAGAGGCCGTGGGGGAGATTCGCAGCGGAGATCAGAGACCCGATGAAGAAGGCGAGGGTCTGGTTAGGC ACGTTTGATTCTGCAGAGGAGGCGGCGCGTGCGTATGACGCCGCCGCACGCGCTCTTCGTGGACCGAAGGCTAAGACAAA CTTTCCTCTCTCACCTTTCTGCTACCACCACCCCGCCGCCGCGGATCCCTTCTACTACGCCGCCGGGAACAACGGCGGTG TTGTTCAGGACCACCATCATGTCAGTAATCCGCAGAGGCCTACATCGAGTGGCATGAGCAGCACCGTGGAGTCCTTCAGT GGCCCCCGTCCTCCCACCGTGAAGCCTGCGGCGGCGGCGCCGTCATCATCCCGCCGGTATCCTCGCACTCCGCCGGTTGT ACCTGAAGACTGCCACAGCGACTGTGATTCCTCCTCATCTGTCGTTGACGACGGTGATGACAACATCGTATCCTCATCGT TTCGCCCGCCGTTGCCGTTTGATCTCAACGCGCCGCCGTGTGATGTTGCCGACGTGGCTGCCGGCGATGATGATGATATT CGCCGGACCGCCCTCTGCCTCTGATATTCATTAGAAAAGTGATTTTTAATTTCTAATTTTTCTCTTATATTGTTATTTAT TTTCTTATATTTATGGTATGCGGAAAAAATGAAAAGGATGATCAGATGTAAGATTATGGTAATATGATCTTAATTCTGTG AGAGTATGTTTCTGTGATGAACAATGTTAATTTCTTCTTCTTTTATATTTAATTTTATCTACGAGAGAATATTGAAAAAA AGGAGGGAAGTAACTATGATCTGGGTTTGCATTGGTCACTCTTTAGCTCTGACAAGTTACAAATCCTCTTGTGTATGTAC TACTAGTAAAGAAATTCAATTTTGCTCTAGTGAAGTTAGATTCACTTGGTTCTTTGTGAAATTAGTTAGTTCTAATGTTA GACCATATTGAATTTAATTGATCTTGTTCTAGATCACTATTTGTTAGATGACATAGGAAACATGCCAATACCATAGTTTG TTTGTTTAAACTTCAACTGCCAAAGGCCTAACAATAACCTTGAGAGCTTTGTTGAATAAACTTCATTTGTCAAGTGATGT AGAATGGTGATGATTTATTCCATCCTTATTTTGGGAGAAATTGCAACAGAGAAAAAGCAAAGAACTATCATTTTGCCTTC TATGGCACTCAATTTTTTTAGCAGCGTGGGATGTATAGATCTATTGTGTGAATTATTAGATGAAAGGGTTTTCTTTTTCT TACAAATAATGATTTGCAATGTTGTCAATTATGGACGCCCAGGGTGTTCAAATATCAGTTGAATTTAACATTAATGGATG TTTAGGACTTTTAACTTTTAAGTTAATTGTTTAGAGTAATTCAAACATATAACACATTGAAATGTCATGTTTGAAGTTAG AATGTTGATGATACCTTTTTCTCTTTCTCTCAAATTTGTAGCTTGTATTTGAATGCTGATGTGAAATCTCAAAGCGAGGA AGGTGCTATGTTGTGAAAGATGTTTGGCGTGAAGGAAATTGGGTTTCCTTACATTTTCCTACCCCACTCAGTCACTAACA ATGTGATGAACGTGGCTTTTGTTCTCTAAAGCCGTGGGGAATGAAACTATGAAAGGTTGTTCTTGTTTTTGTTTTCAAAT CAATGGCAAAGTAAGTTGGAGATTCCTGAAAAGTCAACTCAAAGAAACGCCAAAATACAGTGTCCTGATTAAAGCGTGTA TCCACTTTCATGTTGCAACCTAACCATTCATACCTGCATTCCCACTTACCTTATAGCACGCACTTGTCTCTCACAATCAC ACGCAACCAACATCTCCTTTTGGTTAGAGGATTGGTTAAAGCCACACACGAGACCTTTGATTGACATGCAACTTGTTGCA ACAAATTTGTGCAGCAGCATGAATTGGTGAAATTTCAGTGAGTTCCCAACAAGTTATCCACTCCCTTTGATTGATAAGTA CTTGTTTGTCTGTCAGGCTGAGAGCCTAAAGTGATTTGTAATGTTTAAGCCATTTTATTCACCTAGAAGTGCCAAGAGAT TTAGTTTAACGGGCACATTAGCTATAGTACATTTTGATTAGTTTCTCTTTCTTTCAAAATAAATTTTAGCACCCAACAAA TGCTATTCAGTTAAGTTTTACCTTATAATTGATTTTAGTGTTAGAACTCATGGGATAAGGATTTTCAAACATGCATTTAG CACGGACTAAGGACATGATCGTCAAGATGATTCTCTCTTTATCCTAGAGCCC
CDS sequence (LotjaGi1g1v0025000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAAGAGGCAGAGGAGTAGCAGCTGCTGCTGCGGCGGCGATGGTGGTGGAGGTGAACGGATCGGCGGTGCTTAAGGA GCCACGCTACCGGGGCGTCAGGAAGAGGCCGTGGGGGAGATTCGCAGCGGAGATCAGAGACCCGATGAAGAAGGCGAGGG TCTGGTTAGGCACGTTTGATTCTGCAGAGGAGGCGGCGCGTGCGTATGACGCCGCCGCACGCGCTCTTCGTGGACCGAAG GCTAAGACAAACTTTCCTCTCTCACCTTTCTGCTACCACCACCCCGCCGCCGCGGATCCCTTCTACTACGCCGCCGGGAA CAACGGCGGTGTTGTTCAGGACCACCATCATGTCAGTAATCCGCAGAGGCCTACATCGAGTGGCATGAGCAGCACCGTGG AGTCCTTCAGTGGCCCCCGTCCTCCCACCGTGAAGCCTGCGGCGGCGGCGCCGTCATCATCCCGCCGGTATCCTCGCACT CCGCCGGTTGTACCTGAAGACTGCCACAGCGACTGTGATTCCTCCTCATCTGTCGTTGACGACGGTGATGACAACATCGT ATCCTCATCGTTTCGCCCGCCGTTGCCGTTTGATCTCAACGCGCCGCCGTGTGATGTTGCCGACGTGGCTGCCGGCGATG ATGATGATATTCGCCGGACCGCCCTCTGCCTCTGA
Protein sequence (LotjaGi1g1v0025000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRGRGVAAAAAAAMVVEVNGSAVLKEPRYRGVRKRPWGRFAAEIRDPMKKARVWLGTFDSAEEAARAYDAAARALRGPK AKTNFPLSPFCYHHPAAADPFYYAAGNNGGVVQDHHHVSNPQRPTSSGMSSTVESFSGPRPPTVKPAAAAPSSSRRYPRT PPVVPEDCHSDCDSSSSVVDDGDDNIVSSSFRPPLPFDLNAPPCDVADVAAGDDDDIRRTALCL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 224 | 224 | 2.6E-101 | – | |
| PANTHER | 1 | 224 | 224 | 2.6E-101 | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| Phobius | 18 | 21 | 4 | - | – | |
| Phobius | 22 | 224 | 203 | - | – | |
| Gene3D | 28 | 88 | 61 | 1.1E-31 | ||
| CDD | 28 | 88 | 61 | 1.25389E-19 | ||
| Pfam | 28 | 78 | 51 | 2.5E-14 | ||
| SUPERFAMILY | 29 | 88 | 60 | 4.32E-23 | ||
| ProSiteProfiles | 29 | 86 | 58 | 24.105 | ||
| SMART | 29 | 92 | 64 | 6.5E-37 | ||
| PRINTS | 30 | 41 | 12 | 7.0E-11 | ||
| PRINTS | 52 | 68 | 17 | 7.0E-11 | ||
| MobiDBLite | 113 | 138 | 26 | - | – | |
| MobiDBLite | 113 | 198 | 86 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0025000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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