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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0026200 |
| Transcript ID | LotjaGi1g1v0026200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cell differentiation protein rcd1, putative; TAIR: AT3G20800.1 Cell differentiation, Rcd1-like protein; Swiss-Prot: sp|Q6IP65|RCD1_XENLA Cell differentiation protein RCD1 homolog; TrEMBL-Plants: tr|I3SWY8|I3SWY8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0026200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:3169051..3176046) extracted from Lotus japonicus Gifu genome v1.2.
GCAATCTGTAGCAGACACTCTGCTCATCCCCCTCTCCCATGTCCTCTCCCCTAAAACGCGCGCAAACACACACACTCGCT CTCACTCGCATGCAGAGCACGTAACAACACCACCCTTCCGCAACGGCACCGTTTCATTCCCCCTCACACATCAATCGTAC GTAAATTCTCACACACAACACTGCACGAACCCTCTCGCACGCGAACCATTCAGATTTCAGGGTTCGATCAATGTTAGCCT CCACCATAAATGCCATGGCAGATTCATCATTATCACTCTAATTCCAATTAAATACACACTCACATTTGGGTTTTCTCGGA GTGAACCGTCTCTCATTTCCGAGAATGGCCAATTTGCCCCAATCGCTCTCAATCACCGCCTCCACCTCCTCTCAGCCGCG CAACACCGCCGTCAAGGATCGTGAGACGGTGGCAACGGAACGCATTGTCGTTCAACTGATTCTCGAACTCAGCAACCCCG ATCATCGTGAAAACGCTCTTCATGAACTCTCCAAGGTCTTGTTACCATTATTTCCCTTTTCAACTTCATTTCTATTTTCT CTCTCATTTTTTGGTCTAAATGTATGCATTTCAAATATTGATAGATACAGTATTCATTCATATATGATAATCACTGTTAA TTAGTTGATTTTTTTGGATGCATATCACTGCTGATTAGATTGGAAATTGTAATCATGGTTTCAAATTGCCGTCTGCAACT GCAATTGTAGCCGTAACAACCCGCGAGATGCAGCTGCATTCGCAATTTAAAACCCTGATCGCAATCACTTTCATGTATGT ATTAACGTGAGTTTAGATTTTCATCAAAATTTTGCTTCTATTCTATGATCAACATGTCAGGTTATGGTTTCTACCTTAAG ATGTGTGAAATAATGTTTTCATTGGCATATGCGGCAAACATTACTGGAAAAAATGCTAGAATAATGGTTTCTAATTGTTG TTCGCAACTGCAATTGTAGCGGTAACTTAGCGGATTTTTGAAGTTACCGCGTCGGCATCAGGACCGTAATTGTGGCAACC CACATTTGTCCGCGAGATGCAGCTGCATTCACGACCGCAATTTAAAATCTTGATTGTAATCACTGTCTGTCTCACTTCAC ACGTGTATCACTTAATGTATGTATTAATGTGTGTTTAGATTTTCATCAAGATTTTGCTTCTATAATCAACATGTCAAATT GTGGCTTCTACACTGAGATATGTGAATTAATGTTTGCATTTGTATCGCTAGAAAACAAACCTTAACGTGATGGATTTTGG AATTACTGCATCAGGATCGCAATTGCAGCTCCATCAATGGGCATTTGTTTGCAATTCTGCGATGCAGCTGCAACCCGACT TTATTCGCAATTTAAAACCCTGATTGTAATCACTCTCTGACTCACTTCACACATGTCTTACTTCATGTATGTATTAATGT CTGTTTAGATTTTCATCTAAGTTTTGATTCTATTCTATGATCAGCATGTCAAATTATGGCTTCTACCTTAAGTTATGTTA AATAATGTTTGCATTTGCATCGCTAGAAAACAAACCTTAGCGTAACGGATTTTGGAATTACCACATCAGGACTGTAATTG CAGCCCCATCAATCGGCATTTGTTCGCAATTCCGCGATGCAGCTGTAACCCAACTGCAATCGCAATTTAAAACCCTGTTT GTCTGTCTCACTTCACACATCTACATTTCACGTATGTATTAACTTGTGCAGGAAAGATCCACTCTATGCCATTTGATTCA ATTGCCCCCACAAGCTCTTAAATATTTTATTCATACTATGTGTTTGTTTATACTATTTCCCACACAAAATTTTAATTCTT AATACTACATGTATTGTTTGCCCCCACTACTTATTTACATGTATGTGTATATAAATGGCCCTCACAACTCAAAATTTATG GATCCGTCACCCAACATGTGTGTTTAGATTTTCATCAAAAAATTTCTTCTATGATCAACATGTCAAATTATGGCTTCTAC ATTTGAGACATGTGAAATAATGTTTGCATTTGCATCGCTAGAAAACAAACCTTAACGGAACGGATTTTTGAATTACTGCA TCAGGACCGTAGTTGCAGCTCCATCAATGGGCATTTGTTTGCAATTCTGCGATGCAGCTGCAACCCCGTCAGCAATCGCA ATTCAAAACCCTGGTTTTAATCACTCTCTGACTCACTTCACACATGTATCACTTCACATATGTATTAACGTATGTTTAGT TTTTCATCAAAATTTTGCTTCTACTCTATGATCAACATGTCAGATTGTGGCTTCTACCTTAAGATATGTGAAATAATGTT TGTATTTGCATAGCTAGAAAACAAACCTTAAGGTAACGGATTTTGGAATTACCGCATCAGGACCGTAATTGCAGCCCTAT CAATCGGCATTTTCTTGCAATTCCGCGACGCAGCTGCAACCCGACTGCAATCGCAAATTAAAACCCTGATTGTAATCACT CTCTGACTCATTTCACACATGTATCACTTCACGTATGCATTAGCCTATGTTTAGTTTTTCATCAAAAATTTGCATATCCA GTTAACATGTCAAGTTATTGCGTCTACCTTGATATATGTGAAATAATATTTCCATTCACATCTCTCGGAAACAAACCTAA GGTCTTGTCTGGCTTTGGCGTTTTCAAATTACAATTTGGTTATCTAATCAAAATTTTGTGCCCTTTTTAACTTTTATGTA TTTCAGAAGAGGGAAGTGGTTCAGGATCTCGCTCCGCTAATTTGGAATTCTTTTGGTACCATTGCCGCACTTTTGCAGGT ACGCGAATGTGTGACATTTGTAATGTTTTTTAGCTTGTGAATTTCTCTCTTTCCTGTCTTGTTTATGTGTTCAGAACTTT TTTTAATATAAAACCACTGTTAATTTCAACGAAACTGCAAAAATGACAAGGTGACAGAGAGAGTTATATGTAAATGGTGA TGGTGGATTTCAACTAGAAGTTGTTTAATACTGTTCCATATAAAGTTTCTCTTTGGATCATGCAAGAAATGGTTTTAATT AACTTAATAATACTCTTTTCTAAAGATGCTCTTTAAATTGCATTTTCTTATCTACTCATTTGTATCCTGAAACAGAAATG TTTGGTTATTGTTTTGTAAAAGAGTTTAACTACGTGATCTTAAAAACTGTTCTTATTTTTCGGTTTTTCCTAAAACATGT TTTCTTTTTTACTTTCCAAGTTGCAGGTTTTTGTGCGTTGCAAACCATCTACTTTCTTTTCTTCTTATAAAAACATGTTT TAAAAATTGTTTATGAAAACATTTTTAAACTCCGAAAACTGAGAAGTGAATCAAACAAGCCCTACTATTTTTTTCTTGAT TTTTTTAAAGCAATTAAGCCTTATAGTTACTTCTTTTAACCCCAATAAAAGGGTGTCTATTGGTTGCCCTTCACTTATCT GGATTTCGCATTTTTATTTTCTTGCAGGAAATAACTTCAGTATACCCTGTTATTTCACCACCAACTCTTTCTCCAGCACA ATCAAATCGAGTGTGCAATGCACTTGCTCTACTTCAGGTGAGATGGGTTTGTTCAAGTATGTTTTGTATCATGTGTTCAG CACATGGACAATTTTAATATGCCCTAAAAGTATTATTCTTAACTCTGAAAATCAATTGCTTTGGAAATGAGTCCAGCAAT ATTTTGCTCTTGGTCTTGTTTTTCTTTCCTTCATGTGATAAAAATTTGAAAACAGTGCTGCTAACACTTTTCTTTTCTCC CATGCTTTGACTGAAGTATGTGGCATCTCACCGTGATACAAGGTTGCTATTCCTCAATGGTAATGTCAAGTTTCATATTC ATCTTAATTATGAATTACTCTTATCTTCTGTCTGCTGTTATCCTTATCATTTAAGGGTAGATACCAAGTTGATAAGCTCA ATCATGGACTGAATGTGGAATTGCAATTTGATCTTTCTTTATGATAAACATACCACCTACACAGATGGCCCAGTTCTCTC TCTTTGCCAATTTATTTCTATCTTCCCAGAATTTCCGCTGTAATATATAATGCATTTTTTGTAATTACTGTTTTATTCCT TTTTGTTGATTGCTTTGTTTTGGAGGATACAAGATCATTGAGCTTTTGTTTTGTAGGAGATTTTATCCTTCTCTAGTCGT CTATTCCCTCTTTATTTACCATAAACAAACAAAAAATTCTATATGAAAAATGAATATAAGATGTCCTCCCCGGAAGGTCC TTGAACTAGTAACTAGTTTCTGTACATAAAATTGAGTTATAGTGATAAATTTACATGAGACTTGCACACCCCGCATACGT TCTCTTCATCATACGATGCACACCCTGCAGACTTTCTCTTCATCATATGACTCTGGCGTTGCATGCTTAAAAATGAGTTT ATTTCCCCCATTGTTCACTCCACCTGATTCCTTTTCTTAGTGATTATACCTTTTCCTTGTGACTTGTATTTTTTACTGCC AATATATATACTTTCCAAATCACCTGTAAGCAGATAGGTAGAATTTGTTTTGGTAATATTGAACACAAGGAGATTGCTTC GGCATCTTTTATGCTCCTTAAAAGATAACATTTGAAGGAAAATGATATTAGCCTGGTCACTCTTTTACATTTTTCTCATC TGCAGCTCACTTACATCTATATCTGTATCCCTTCCTTAAGACAACAAGCAAGGCAAAGCCATTTGAGTATTTGCGGCTTA CCAGTCTTGGTGTCATTGGTGCCTTGGTGAAGGTACTACATCCTTGCTGAGTCTGTTGTTTGATAAGCTTGACTATAGGA AGATTTTTTTTTTAATGGTGAAACATGCTGAAAGGAGGATAACTTTATTTACTAAAAAGCAAATAATCATATTTGGCAAT AACATAACAACCTTAAGTTAATATAGCATTTGTTTTGGGTAAATATTAAGTTGCCACAAATAATTATTAGGCTTAAATAA GTTTTTGGTCCCTGTAATATACCCCATTTTCAATTTTAGTCCTTGTAAAATACTAAAAAATTTGTTTTGTTTTTCATCCC TCCAAAATTATGACTTTTTTGTTCTTGACCTTAGTTTTTCTGTCTAAATGGAACGAAAATCCATGTAAGCAGTACACATG CCTTTGTTTTGGGTTAGGGTTGGAGGTTGAATGTTGGGATTTGTTTAGGGTCAGGTTTACAAAGTCTCCATTGGAACAGC TTGTGGTCTCTGATCTAGCATGTGCTGGTGAGGCTGATGAGGGAAAAGGAGGAAAACCATATATTTATGATGAGGGATGA GAAAGGGAAATTCTTTTTACAAGTGCTAAAATAAAAAATGGGTTTATATTACGGCTACCAACATCATATTTAAGTCTAGT TATTATTATGTTTCAAAGTCAGTCTTGTGAAAATTTTGTATAATTTAACGGGATGTACAAATACAATTCTAACTTAAAAG GATGATTTCATCTCTTCTATCAAAGAATAAAAATTTCAGTACTACTTTTTTGTTCTTCTATTAGTGACTGTTGAATTTTT ATCACTTGGTCACATGTATATCATTTATATTTATGTCTTGTCAATTGTGATTACTTCCCTCTTGATATTCACCAGGTTGA AGACGTGGAAATTATAAGTTTCCTTCTTTCAACGGAGATAATTCCTCTCTGCCTGCACACCATGGAAATCGGCACTGTGT TGTCAAAAACAGTTGAGTTTGCTTCAGCCAATGTCTGAACAATATTTTGTTTGTGTGAATTGAACTTGGTTGCTATATCA TACTTTATTTTCCTTCTAGCCATTCTTTCTTGGGGATGTATAATTAATAGGTATTCATATGAAGCTATCTTACATGTTCT AATGCTACACAAGAAGTGTTAGACGATTAGTTTATATTTTATCTTATCAGTGGAATCACAGTTGAGGAGATGGTCTTGGC ACAAGAGTTTGTTTTATTCAAGTTCTATATCCTTGCAGGTTTCAACATTTATAATTCAAAGAGTTCTGTCACACCATGTT GGTAAGGAGTATGTTTTTGCTAGGCCAGACCGCTTTTTTGCAATCGGTCAAGTTTTGGGGAAAGTGGTGGCATTTCTTGT TGAGCAACCTTCAATTCGTCTTTTGAAGCATGTTATCCGATGTTATCTTCTTCTGTCAGAACATTGGAGGTTAGTTAAGA ATAATTACTCCAGTGTCGTAAGTGCTCCTACCATGCCCTTTTCCCTTCTATCTTCTAATAAAACTCCCCTTGTAATTAAA CAGGGGCGTCGAAGCGTTAAGCAGCTGTCTTCCTGAAATGTTCAGAGATGGTACTTTCAGTAATTTGCTTCGAGTAAGTA CTTGCATGTTTGCGATACATCATAAGATATGCCTTAATATTATGAGACATGATAGTGTTAGGACTGGTTGTCCAAGGACT GAATTTCAGATTTGTAGATTTTTCTCTTATCTTTTACAAAGGAATTATTCTTGTTTTTAGTTTTTCGTTATCTGACCTTG CCTTACTGCTTTCAGGAGGACCCTGATCTCATGAGGTTTCTACAACAGTTGCTTCACAAAGTTAATCAGGTTCCTGCACC ACAAGCTGGAGAAGGATACAATCACATGATGGTACCCTGAGAATAAAGATCTTGGTTAGTTGCTGGGCTTGAGATAATTC ACTTGATTGATCAAATTGGAGCTAAGCCAGATATTGGTTGTGATTATAGATTATTATTATTTATTGAGTTAAAAGACAGT TGCTCGGCCTATGTACTCAATTAAGTGGTTCATTTTAATCCCCTCATGAATATTTAAGTTGGACCCTGAGTTGTTAAACT TGGTATTTTTGTAACTCCTTAACGTGGTTCTTCACTTTGAGACTCGACCAATTGGATTTTTGTGAAAACTATTGTGAAGT GAAAATCATGGTTGACAAATACAAAAGCATAGAGAAGTTGTTATATTTAAATCATGTGCCATATAAGAAATGTTTTCTCA AGGTCTGAATAAACATAACCATTATATTGATTAAAT
CDS sequence (LotjaGi1g1v0026200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAATTTGCCCCAATCGCTCTCAATCACCGCCTCCACCTCCTCTCAGCCGCGCAACACCGCCGTCAAGGATCGTGA GACGGTGGCAACGGAACGCATTGTCGTTCAACTGATTCTCGAACTCAGCAACCCCGATCATCGTGAAAACGCTCTTCATG AACTCTCCAAGAAGAGGGAAGTGGTTCAGGATCTCGCTCCGCTAATTTGGAATTCTTTTGGTACCATTGCCGCACTTTTG CAGGAAATAACTTCAGTATACCCTGTTATTTCACCACCAACTCTTTCTCCAGCACAATCAAATCGAGTGTGCAATGCACT TGCTCTACTTCAGTATGTGGCATCTCACCGTGATACAAGGTTGCTATTCCTCAATGCTCACTTACATCTATATCTGTATC CCTTCCTTAAGACAACAAGCAAGGCAAAGCCATTTGAGTATTTGCGGCTTACCAGTCTTGGTGTCATTGGTGCCTTGGTG AAGGTTGAAGACGTGGAAATTATAAGTTTCCTTCTTTCAACGGAGATAATTCCTCTCTGCCTGCACACCATGGAAATCGG CACTGTGTTGTCAAAAACAGTTTCAACATTTATAATTCAAAGAGTTCTGTCACACCATGTTGGTAAGGAGTATGTTTTTG CTAGGCCAGACCGCTTTTTTGCAATCGGTCAAGTTTTGGGGAAAGTGGTGGCATTTCTTGTTGAGCAACCTTCAATTCGT CTTTTGAAGCATGTTATCCGATGTTATCTTCTTCTGTCAGAACATTGGAGGGGCGTCGAAGCGTTAAGCAGCTGTCTTCC TGAAATGTTCAGAGATGGTACTTTCAGTAATTTGCTTCGAGAGGACCCTGATCTCATGAGGTTTCTACAACAGTTGCTTC ACAAAGTTAATCAGGTTCCTGCACCACAAGCTGGAGAAGGATACAATCACATGATGGTACCCTGA
Protein sequence (LotjaGi1g1v0026200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANLPQSLSITASTSSQPRNTAVKDRETVATERIVVQLILELSNPDHRENALHELSKKREVVQDLAPLIWNSFGTIAALL QEITSVYPVISPPTLSPAQSNRVCNALALLQYVASHRDTRLLFLNAHLHLYLYPFLKTTSKAKPFEYLRLTSLGVIGALV KVEDVEIISFLLSTEIIPLCLHTMEIGTVLSKTVSTFIIQRVLSHHVGKEYVFARPDRFFAIGQVLGKVVAFLVEQPSIR LLKHVIRCYLLLSEHWRGVEALSSCLPEMFRDGTFSNLLREDPDLMRFLQQLLHKVNQVPAPQAGEGYNHMMVP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| MobiDBLite | 1 | 26 | 26 | - | – | |
| PANTHER | 18 | 298 | 281 | 3.4E-132 | – | |
| PANTHER | 18 | 298 | 281 | 3.4E-132 | ||
| Gene3D | 27 | 298 | 272 | 3.4E-119 | ||
| SUPERFAMILY | 36 | 294 | 259 | 4.29E-6 | ||
| Pfam | 38 | 296 | 259 | 2.3E-111 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA catabolic process | The chemical reactions and pathways resulting in the breakdown of mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes. | ||
| Cellular component | CCR4-NOT complex | The evolutionarily conserved CCR4-NOT complex is involved in several aspects of mRNA metabolism, including repression and activation of mRNA initiation, control of mRNA elongation, and the deadenylation and subsequent degradation of mRNA. In Saccharomyces the CCR4-NOT complex comprises a core complex of 9 proteins (Ccr4p, Caf1p, Caf40p, Caf130p, Not1p, Not2p, Not3p, Not4p, and Not5p), Caf4p, Caf16p, and several less well characterized proteins. |
Expression pattern of LotjaGi1g1v0026200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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