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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0026300 |
| Transcript ID | LotjaGi1g1v0026300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cell differentiation protein RCD1 like; TAIR: AT3G20800.1 Cell differentiation, Rcd1-like protein; Swiss-Prot: sp|Q6IP65|RCD1_XENLA Cell differentiation protein RCD1 homolog; TrEMBL-Plants: tr|I3SWY8|I3SWY8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0026300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:3182251..3187630) extracted from Lotus japonicus Gifu genome v1.2.
ATAATATATAAAGAGTCTTAAATTTTTGAACTAGGTCAGACCTATTTAAACAACGCGCATATCGGAGTCTATCTTCACCC CTACTACTAAACACGCAGCAGTAGTAGGCTCTGCAACAACAACAATATCTCTTGTTCATCTTCTTTCCATCTCCTCTCCC TTTGCAACACAGACACACTTATCTGTAGTTTCTCACTCACTCACTCACTCACTGACTCGCATGCAAAGCACGTGCCGCGT TCTCCTTCTAAACCGGAAAATACAACACCACCATAACACGACGAAGTGACGAACCGTTTTCACCCTCACGCATTTATCAC TATCATCATCACGCATTAAACATTACAGATTAAAACAAACAAGCTAATCAGAATTCTGAACTTCACAAACAAACCCTTTC TTTCGCAATGGCGAATTTGCCCCAATCGCTCTCAGTGTGTAGCGGCGGCGCCGCCGTCGTCGTCAAGGATCAGAAGACGG CAGCAGCGGAACGCATTATTCTCAAACTGATTCTCGAACTCAGCAACCCTGATAATCGTGAACGCGCTCTTCATGAACTC GCTCAGGTCGTTACCACTTCGGTACTTCCCCTCTCAATTTCGTTTCCGTTTTGTTAGAATTTGAATGAGAATGAGAACTT CGTTTCAACTCAGTCAACATCCCTCCGTTTACTAGGGTTTTACTCTCTTCTTTTCGTTTTCAATTCAATTTCTGGTCTAC ATTTGCATTTGAATTTTCAAGCATTGCTTCTGTATTCATATATGATCATCACTGTTAGTTAGATTGAAAATTACACATGT GTGACTTCACATATGTATTATGCTTAACTAGACATGTCAAAATTTTGCTTCGCCGATCATCGCCGTGTCAAAATTTTGCT TCTACCTTAGCATAGTTATGTGGAATCACGATTACATTTGCATTGTCTGGGTTTGGCATTTTCGCATTACAATTTGGTTA GCTAATCAGTTTCTCATATTTCAGAAGAGGGAGTTAGTTCAGGATCTCGAACTCGCTCCGCTAATTTGGCATTCTTTTGG TACCATTGCTGTGCTTTTGCAGGTATGTATGTGTTTGATTTGTTATGTTTTTGAGCTTATGAATTTCTCTCTTTTCGGTC CTGTTTATGCGTTTCGAGCGTTTTTTATAAGTGACAAGATGACGGAGAGAGTTATAAGTAAATTTCAATGGTGGATTTCA ACTAGAAGTTGTTTTAAACTGTTAAGATATAAAATTGCTCTATGTAGTTTGTCATGCCAGAAATGGTTTTTAGTTTGACT TAATAGGACTCTTTTCTGAGCATGCTCTTTAAATGGTTTTTCTTGATTGCTTTAAGAAATTAAGCCTTGGTAAATAGGTT GTACTGGTTGCCCTGCACAGCTGCACTTACCTGGATTTGGCATTTTTATTTTCTTCCAGGAAATAGTTGCTGTATACCCT GTTCTTTCGCCACCAAATCTTTCTCCGACACAATCAAATCGAGTATGCAATGCACTTGCTCTACTTCAGGTGAGATGAGT TTGTTCAAGTTCGTTTTGTATCTAGTGTTCAGGACACAGACAATTTTGATATGCCCCAAAGATATTTTTCTTAACACTGA AAATCAATTGACTTGGAAATGAGTCTAGCAATACTTTCTTATTGGTCTTGTTTTCCCTTTCCTTCATGTGATACAAATTT GAAAACAATTTTGCTAACACTTTTCTTTTTCTCATGATTTTACTGAAGTGTGTGGCAGCTCACCATGATACAAGGAGGCT ATTTCTCAATGGTAATGTCAAGTTTCATACTCATTTGAATTCGGAATTACTCTTTCTGTCTCCTGTTCTCTGTATCATTA GGGGTAAATGCAAAGTTATAAGCTCAATCATCAACTCAATGTGGAATTGCAATTTGATCTTTCTTGATGATAAATACACC ACCAAAAACAGATGGCCCAGTTCTCTCCCTTTGCCAATTCAATTCTATCTTCCCAGATTTTCCACTGTATTATAAAATGC ATTATTTGAAATTACTATTTTTTTGTTTGTTGCTTTGTTTTGGAGCATGCAAGATCACTGAGCTTTTGTTTTGGAGGAAA GTTTTTCCTTCCCCAGCTGTATATTCCCTCTTTATTTACTCTCAACTAAAATTTATTTTTTCTATATGAAAAAATGAATA TAAGATGTCCTTCCTGGAAGATCTTTGGTCCAGTAACTAGCTTCTATACATGAAATTTTAGCCATGGGGAGAAATTTTAA ATGCGACTTGCACACCCTGCATACTGTCTCTTCATCATACAACTCTGGTGTTGCATGCTTGAAAATGAGTTTCTTTCCCC CATTGTTCACTCCACCTGATTCCCTTTCTTAGTGATTATACCTTTTCCTTGTGACTTGTATTTTTTGTTGCTAATATCTA TACTTCCACAAGAATATGTAAGCAGACTTATGCGTTGAATTTGTTTTGGTAATATTATATTTAAGGAGATTGCTTTGAAA TTGTTTATGCTCCTTCAAAGATAACATTGATGTAAAAAGATATTAGCCTGTTCACTCTTTACACTTTTCTCATCTGCAGC TCACTTACCTCTATATCTGTATCCCTTCCTTAAATCAACAAGCAAGTCAAAGCCTTTTGAGTATTTGAGGCTTACCAGTC TTGGTGTCATTGGTGCCTTGGTGAAGGTACTACATCCTTGCTGATTCTGTTGTTTGATAACCTTGACTGAAGATTAATTT TAAAAGGTGAAAGTCATGCTGAAAAGAAGATAATTTTATTTACTAAAAAGCAAAAAAATATTGCCACAAAAAATTATATA TGGCAATAACAGCACAACCTTAAGATATTATGCCTCGAACAAAAAGCACTTGTGACTTATTATTTGATTAATTCAAATTT TATGACAAGCAGCTAGTTGGGTAAATATTTAGTTGCCTCTAATAATTATTATTAAGTTTCAAACTTAGTCCTGTGAAATT TTCGTATAATTTAACAGGATGTACTAATCCAACTTAAATGAATGACTTCATCTCTATTATCAAAGAAAAAAAGTTCCCCT ACTATTTTTTGTTCTTGGTTCTTTTCGTAACTGTTGAATTTTTTACCACCCAGTCACATGTATATCATTTATATTTAAGT CATTTTAATTTCCCTCTTGATATTCAGCAGGTTGATGATGGGGATATTATAAGCTTCCTTCTTTCAACAGAGATAATTCC ACTCTGCCTGCGCACTATGGAAATTGGCACTGAGTTGTCAAAAACAGTTGAGTTTACCCCGGCCAATGTTTTAATACAGT ATTTTGTTTGTGTGAATTGAACTTGGTTGCTATATCATTCTTTATTTTGCTTATATGACTAACATGAATATTATGTGAAC TTGAGAAAGTTGTTCTTCTAAGAACCTTTTTTAATCCCATCTTTTAAGCTGTTGGTCTTATTATAAGCTTTTAGCTATAG TCAGGAGACTGTTGTACTCTTGTTGATGTGTTTAGTGGCACAACAATGCAACTTAAGACCCGCAGTTGTACTACATGGAC TCTATTACAGTGCTTGATACATAAACTAAATCTTTGAGATGGATTTGTGTGGTGAATGTGAGAAATATAAAAGCTACTTG TTAATGAATGTTGCACTTGTGTACTTTTATGTTCTGTAATGGCTGAGCCACTTGAATTGTTTTAGCTGCCTGCCTGCCAA TAACTCTTAATCCTGTTTTACCTAAAAGGAATTATTGAAGTTCTATTTCCCTGCAGGTTTCAACATTTATAATTCAAAGA GTTCTGTCGCATGATGTTGGTAAGGGATATATTTTTACTAGGACAGACCGCTTTTGTGCAATTAGTCAAGTTTTGGGGGA AGTGGTGGCATTTCTTGCAGAGCAACCTTCACCTCGTCTTTTTAAGCATGTTATCCGATGTTATCTTCTTCTGTCAGAAA ATTGGAGGTTGGTTAATAATATTAACTCCAGTATCGTAAGTGCTCCAACCATGCCCTTTCCCTTCCATCTTCTAATAAAA CTCCCCTCGTATTAAAACAGTGGTGGCGAAGCATTACGCAGATATTTTCCTGAAATCTTCAGAGATGGCACTTTCAATAG TTGGCTTCAAGTAAGTACTCACATGTTTGCCATACATCATAAGATAAACCTTAATATTTTGAGACATGATAGTGTTAGGA CCTGTTGTCCAAGGGATGAAAAACTAAATAGCCATTTTTATCTTTGAAAGAGAGAAGGTTGGTCACTCTAGTCCCCTGAA AGATAAAATACATTTAATTCAGTCCTCCCCGAGATTAAAATTAAATTTCTTTTTGATTTTTCAGGGATTAAATTAATCGT TATCTCATCTTTGAAGAATTAAAATGATGATTTACTCAAAATTTATTTAACCTTTATATTATAAATTTGAGATCTTTGGG ATTTGGCTAGTGAGACATTCATTCACTTGCTCTCTATGTCAAATAATTTTAACCTTATCTCTCCCCCATCTAACAGTGTG AACTTTTCATACATTTAAATTATCAAAACTTAAGTAGTATTTTAATTTTTAATATTTATTTTATAATTCAAAGTTCCTTA AATGATGTAACTTAAATTTTAGTAGCTTAATATAATTTGCTACAACAATTTAATATTGCATAATTGTCCTTAATCTTTCT ATTTTTTTCATTCAATTTCTATTCCTTATTTTTTTTGTCAATTTAAATTTTAATTCATATGTTGTTTTTAAGCTAATATT CTTTTAATATATAGATTATTATATTCCTTATTCAATTTTCAATTCAATTTTAATCCCTTTCTTATTTTTAAACTAATTCT ATTTTAATATTTATATATTAAGTTGAAAATAGATAATTACTTCAAAGTTGTGGTACTCGAATATTTTAATATCAAAATTT ATTCATGTTTTTAGTTTACGTTATCTGACCTTTGCCTTAATGTTGCATTCAGGATCAAGACCAATCACTCATGTTGGGGC TACATCATTTGCTTCACAAAGTTAATCAGCTTCCTTCACAACAAGCTGGAGGTGGGTTCAATCATATGATGGCACCCTGA GAATATAGATCTTGGTTAGTTGCTAGGTCCGAGATAAATTAGTTGATGCACCAAATTGAGGCTAGACCAGTTGTTTTACA CCAAAAATTGAGTATTAGTTGCGATTATAGATTATAGATTATAGATTAAATATCGAGTTAAAAAAGTTGCTCGATCGAGC TGGTACTTTTGACCTACTTAATTAGGTGGTTCATTTAATCCCTAAATGAATTTTCAAGTTGGAAAGTGAGATATTAAATT GGCGTTTTTTTTACTCCTCCCTTTGGCTGTTCTTTTTAGACTCTACGAAGTGGGTTTGGATCTGCGTTAACATAATTGAT TCTAGATAGGATTAATTTTA
CDS sequence (LotjaGi1g1v0026300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAATTTGCCCCAATCGCTCTCAGTGTGTAGCGGCGGCGCCGCCGTCGTCGTCAAGGATCAGAAGACGGCAGCAGC GGAACGCATTATTCTCAAACTGATTCTCGAACTCAGCAACCCTGATAATCGTGAACGCGCTCTTCATGAACTCGCTCAGG TCGTTACCACTTCGAAGAGGGAGTTAGTTCAGGATCTCGAACTCGCTCCGCTAATTTGGCATTCTTTTGGTACCATTGCT GTGCTTTTGCAGGAAATAGTTGCTGTATACCCTGTTCTTTCGCCACCAAATCTTTCTCCGACACAATCAAATCGAGTATG CAATGCACTTGCTCTACTTCAGTGTGTGGCAGCTCACCATGATACAAGGAGGCTATTTCTCAATGCTCACTTACCTCTAT ATCTGTATCCCTTCCTTAAATCAACAAGCAAGTCAAAGCCTTTTGAGTATTTGAGGCTTACCAGTCTTGGTGTCATTGGT GCCTTGGTGAAGGTTGATGATGGGGATATTATAAGCTTCCTTCTTTCAACAGAGATAATTCCACTCTGCCTGCGCACTAT GGAAATTGGCACTGAGTTGTCAAAAACAGTTTCAACATTTATAATTCAAAGAGTTCTGTCGCATGATGTTGGTAAGGGAT ATATTTTTACTAGGACAGACCGCTTTTGTGCAATTAGTCAAGTTTTGGGGGAAGTGGTGGCATTTCTTGCAGAGCAACCT TCACCTCGTCTTTTTAAGCATGTTATCCGATGTTATCTTCTTCTGTCAGAAAATTGGAGTGGTGGCGAAGCATTACGCAG ATATTTTCCTGAAATCTTCAGAGATGGCACTTTCAATAGTTGGCTTCAAGATCAAGACCAATCACTCATGTTGGGGCTAC ATCATTTGCTTCACAAAGTTAATCAGCTTCCTTCACAACAAGCTGGAGGTGGGTTCAATCATATGATGGCACCCTGA
Protein sequence (LotjaGi1g1v0026300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANLPQSLSVCSGGAAVVVKDQKTAAAERIILKLILELSNPDNRERALHELAQVVTTSKRELVQDLELAPLIWHSFGTIA VLLQEIVAVYPVLSPPNLSPTQSNRVCNALALLQCVAAHHDTRRLFLNAHLPLYLYPFLKSTSKSKPFEYLRLTSLGVIG ALVKVDDGDIISFLLSTEIIPLCLRTMEIGTELSKTVSTFIIQRVLSHDVGKGYIFTRTDRFCAISQVLGEVVAFLAEQP SPRLFKHVIRCYLLLSENWSGGEALRRYFPEIFRDGTFNSWLQDQDQSLMLGLHHLLHKVNQLPSQQAGGGFNHMMAP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 23 | 302 | 280 | 1.1E-110 | ||
| PANTHER | 25 | 304 | 280 | 1.7E-122 | – | |
| PANTHER | 25 | 304 | 280 | 1.7E-122 | ||
| SUPERFAMILY | 31 | 273 | 243 | 7.2E-7 | ||
| Pfam | 34 | 300 | 267 | 6.3E-105 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA catabolic process | The chemical reactions and pathways resulting in the breakdown of mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes. | ||
| Cellular component | CCR4-NOT complex | The evolutionarily conserved CCR4-NOT complex is involved in several aspects of mRNA metabolism, including repression and activation of mRNA initiation, control of mRNA elongation, and the deadenylation and subsequent degradation of mRNA. In Saccharomyces the CCR4-NOT complex comprises a core complex of 9 proteins (Ccr4p, Caf1p, Caf40p, Caf130p, Not1p, Not2p, Not3p, Not4p, and Not5p), Caf4p, Caf16p, and several less well characterized proteins. |
Expression pattern of LotjaGi1g1v0026300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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