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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0026300 |
| Transcript ID | LotjaGi1g1v0026300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cell differentiation protein RCD1 like; TAIR: AT3G20800.1 Cell differentiation, Rcd1-like protein; Swiss-Prot: sp|Q6IP65|RCD1_XENLA Cell differentiation protein RCD1 homolog; TrEMBL-Plants: tr|I3SWY8|I3SWY8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0026300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:3182339..3187546) extracted from Lotus japonicus Gifu genome v1.2.
AAACACGCAGCAGTAGTAGGCTCTGCAACAACAACAATATCTCTTGTTCATCTTCTTTCCATCTCCTCTCCCTTTGCAAC ACAGACACACTTATCTGTAGTTTCTCACTCACTCACTCACTCACTGACTCGCATGCAAAGCACGTGCCGCGTTCTCCTTC TAAACCGGAAAATACAACACCACCATAACACGACGAAGTGACGAACCGTTTTCACCCTCACGCATTTATCACTATCATCA TCACGCATTAAACATTACAGATTAAAACAAACAAGCTAATCAGAATTCTGAACTTCACAAACAAACCCTTTCTTTCGCAA TGGCGAATTTGCCCCAATCGCTCTCAGTGTGTAGCGGCGGCGCCGCCGTCGTCGTCAAGGATCAGAAGACGGCAGCAGCG GAACGCATTATTCTCAAACTGATTCTCGAACTCAGCAACCCTGATAATCGTGAACGCGCTCTTCATGAACTCGCTCAGGT CGTTACCACTTCGGTACTTCCCCTCTCAATTTCGTTTCCGTTTTGTTAGAATTTGAATGAGAATGAGAACTTCGTTTCAA CTCAGTCAACATCCCTCCGTTTACTAGGGTTTTACTCTCTTCTTTTCGTTTTCAATTCAATTTCTGGTCTACATTTGCAT TTGAATTTTCAAGCATTGCTTCTGTATTCATATATGATCATCACTGTTAGTTAGATTGAAAATTACACATGTGTGACTTC ACATATGTATTATGCTTAACTAGACATGTCAAAATTTTGCTTCGCCGATCATCGCCGTGTCAAAATTTTGCTTCTACCTT AGCATAGTTATGTGGAATCACGATTACATTTGCATTGTCTGGGTTTGGCATTTTCGCATTACAATTTGGTTAGCTAATCA GTTTCTCATATTTCAGAAGAGGGAGTTAGTTCAGGATCTCGAACTCGCTCCGCTAATTTGGCATTCTTTTGGTACCATTG CTGTGCTTTTGCAGGTATGTATGTGTTTGATTTGTTATGTTTTTGAGCTTATGAATTTCTCTCTTTTCGGTCCTGTTTAT GCGTTTCGAGCGTTTTTTATAAGTGACAAGATGACGGAGAGAGTTATAAGTAAATTTCAATGGTGGATTTCAACTAGAAG TTGTTTTAAACTGTTAAGATATAAAATTGCTCTATGTAGTTTGTCATGCCAGAAATGGTTTTTAGTTTGACTTAATAGGA CTCTTTTCTGAGCATGCTCTTTAAATGGTTTTTCTTGATTGCTTTAAGAAATTAAGCCTTGGTAAATAGGTTGTACTGGT TGCCCTGCACAGCTGCACTTACCTGGATTTGGCATTTTTATTTTCTTCCAGGAAATAGTTGCTGTATACCCTGTTCTTTC GCCACCAAATCTTTCTCCGACACAATCAAATCGAGTATGCAATGCACTTGCTCTACTTCAGGTGAGATGAGTTTGTTCAA GTTCGTTTTGTATCTAGTGTTCAGGACACAGACAATTTTGATATGCCCCAAAGATATTTTTCTTAACACTGAAAATCAAT TGACTTGGAAATGAGTCTAGCAATACTTTCTTATTGGTCTTGTTTTCCCTTTCCTTCATGTGATACAAATTTGAAAACAA TTTTGCTAACACTTTTCTTTTTCTCATGATTTTACTGAAGTGTGTGGCAGCTCACCATGATACAAGGAGGCTATTTCTCA ATGGTAATGTCAAGTTTCATACTCATTTGAATTCGGAATTACTCTTTCTGTCTCCTGTTCTCTGTATCATTAGGGGTAAA TGCAAAGTTATAAGCTCAATCATCAACTCAATGTGGAATTGCAATTTGATCTTTCTTGATGATAAATACACCACCAAAAA CAGATGGCCCAGTTCTCTCCCTTTGCCAATTCAATTCTATCTTCCCAGATTTTCCACTGTATTATAAAATGCATTATTTG AAATTACTATTTTTTTGTTTGTTGCTTTGTTTTGGAGCATGCAAGATCACTGAGCTTTTGTTTTGGAGGAAAGTTTTTCC TTCCCCAGCTGTATATTCCCTCTTTATTTACTCTCAACTAAAATTTATTTTTTCTATATGAAAAAATGAATATAAGATGT CCTTCCTGGAAGATCTTTGGTCCAGTAACTAGCTTCTATACATGAAATTTTAGCCATGGGGAGAAATTTTAAATGCGACT TGCACACCCTGCATACTGTCTCTTCATCATACAACTCTGGTGTTGCATGCTTGAAAATGAGTTTCTTTCCCCCATTGTTC ACTCCACCTGATTCCCTTTCTTAGTGATTATACCTTTTCCTTGTGACTTGTATTTTTTGTTGCTAATATCTATACTTCCA CAAGAATATGTAAGCAGACTTATGCGTTGAATTTGTTTTGGTAATATTATATTTAAGGAGATTGCTTTGAAATTGTTTAT GCTCCTTCAAAGATAACATTGATGTAAAAAGATATTAGCCTGTTCACTCTTTACACTTTTCTCATCTGCAGCTCACTTAC CTCTATATCTGTATCCCTTCCTTAAATCAACAAGCAAGTCAAAGCCTTTTGAGTATTTGAGGCTTACCAGTCTTGGTGTC ATTGGTGCCTTGGTGAAGGTACTACATCCTTGCTGATTCTGTTGTTTGATAACCTTGACTGAAGATTAATTTTAAAAGGT GAAAGTCATGCTGAAAAGAAGATAATTTTATTTACTAAAAAGCAAAAAAATATTGCCACAAAAAATTATATATGGCAATA ACAGCACAACCTTAAGATATTATGCCTCGAACAAAAAGCACTTGTGACTTATTATTTGATTAATTCAAATTTTATGACAA GCAGCTAGTTGGGTAAATATTTAGTTGCCTCTAATAATTATTATTAAGTTTCAAACTTAGTCCTGTGAAATTTTCGTATA ATTTAACAGGATGTACTAATCCAACTTAAATGAATGACTTCATCTCTATTATCAAAGAAAAAAAGTTCCCCTACTATTTT TTGTTCTTGGTTCTTTTCGTAACTGTTGAATTTTTTACCACCCAGTCACATGTATATCATTTATATTTAAGTCATTTTAA TTTCCCTCTTGATATTCAGCAGGTTGATGATGGGGATATTATAAGCTTCCTTCTTTCAACAGAGATAATTCCACTCTGCC TGCGCACTATGGAAATTGGCACTGAGTTGTCAAAAACAGTTGAGTTTACCCCGGCCAATGTTTTAATACAGTATTTTGTT TGTGTGAATTGAACTTGGTTGCTATATCATTCTTTATTTTGCTTATATGACTAACATGAATATTATGTGAACTTGAGAAA GTTGTTCTTCTAAGAACCTTTTTTAATCCCATCTTTTAAGCTGTTGGTCTTATTATAAGCTTTTAGCTATAGTCAGGAGA CTGTTGTACTCTTGTTGATGTGTTTAGTGGCACAACAATGCAACTTAAGACCCGCAGTTGTACTACATGGACTCTATTAC AGTGCTTGATACATAAACTAAATCTTTGAGATGGATTTGTGTGGTGAATGTGAGAAATATAAAAGCTACTTGTTAATGAA TGTTGCACTTGTGTACTTTTATGTTCTGTAATGGCTGAGCCACTTGAATTGTTTTAGCTGCCTGCCTGCCAATAACTCTT AATCCTGTTTTACCTAAAAGGAATTATTGAAGTTCTATTTCCCTGCAGGTTTCAACATTTATAATTCAAAGAGTTCTGTC GCATGATGTTGGTAAGGGATATATTTTTACTAGGACAGACCGCTTTTGTGCAATTAGTCAAGTTTTGGGGGAAGTGGTGG CATTTCTTGCAGAGCAACCTTCACCTCGTCTTTTTAAGCATGTTATCCGATGTTATCTTCTTCTGTCAGAAAATTGGAGG TTGGTTAATAATATTAACTCCAGTATCGTAAGTGCTCCAACCATGCCCTTTCCCTTCCATCTTCTAATAAAACTCCCCTC GTATTAAAACAGTGGTGGCGAAGCATTACGCAGATATTTTCCTGAAATCTTCAGAGATGGCACTTTCAATAGTTGGCTTC AAGTAAGTACTCACATGTTTGCCATACATCATAAGATAAACCTTAATATTTTGAGACATGATAGTGTTAGGACCTGTTGT CCAAGGGATGAAAAACTAAATAGCCATTTTTATCTTTGAAAGAGAGAAGGTTGGTCACTCTAGTCCCCTGAAAGATAAAA TACATTTAATTCAGTCCTCCCCGAGATTAAAATTAAATTTCTTTTTGATTTTTCAGGGATTAAATTAATCGTTATCTCAT CTTTGAAGAATTAAAATGATGATTTACTCAAAATTTATTTAACCTTTATATTATAAATTTGAGATCTTTGGGATTTGGCT AGTGAGACATTCATTCACTTGCTCTCTATGTCAAATAATTTTAACCTTATCTCTCCCCCATCTAACAGTGTGAACTTTTC ATACATTTAAATTATCAAAACTTAAGTAGTATTTTAATTTTTAATATTTATTTTATAATTCAAAGTTCCTTAAATGATGT AACTTAAATTTTAGTAGCTTAATATAATTTGCTACAACAATTTAATATTGCATAATTGTCCTTAATCTTTCTATTTTTTT CATTCAATTTCTATTCCTTATTTTTTTTGTCAATTTAAATTTTAATTCATATGTTGTTTTTAAGCTAATATTCTTTTAAT ATATAGATTATTATATTCCTTATTCAATTTTCAATTCAATTTTAATCCCTTTCTTATTTTTAAACTAATTCTATTTTAAT ATTTATATATTAAGTTGAAAATAGATAATTACTTCAAAGTTGTGGTACTCGAATATTTTAATATCAAAATTTATTCATGT TTTTAGTTTACGTTATCTGACCTTTGCCTTAATGTTGCATTCAGGATCAAGACCAATCACTCATGTTGGGGCTACATCAT TTGCTTCACAAAGTTAATCAGCTTCCTTCACAACAAGCTGGAGGTGGGTTCAATCATATGATGGCACCCTGAGAATATAG ATCTTGGTTAGTTGCTAGGTCCGAGATAAATTAGTTGATGCACCAAATTGAGGCTAGACCAGTTGTTTTACACCAAAAAT TGAGTATTAGTTGCGATTATAGATTATAGATTATAGATTAAATATCGAGTTAAAAAAGTTGCTCGATCGAGCTGGTACTT TTGACCTACTTAATTAGGTGGTTCATTTAATCCCTAAATGAATTTTCAAGTTGGAAAGTGAGATATTAAATTGGCGTTTT TTTTACTC
CDS sequence (LotjaGi1g1v0026300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAATTTGCCCCAATCGCTCTCAGTGTGTAGCGGCGGCGCCGCCGTCGTCGTCAAGGATCAGAAGACGGCAGCAGC GGAACGCATTATTCTCAAACTGATTCTCGAACTCAGCAACCCTGATAATCGTGAACGCGCTCTTCATGAACTCGCTCAGA AGAGGGAGTTAGTTCAGGATCTCGAACTCGCTCCGCTAATTTGGCATTCTTTTGGTACCATTGCTGTGCTTTTGCAGGAA ATAGTTGCTGTATACCCTGTTCTTTCGCCACCAAATCTTTCTCCGACACAATCAAATCGAGTATGCAATGCACTTGCTCT ACTTCAGTGTGTGGCAGCTCACCATGATACAAGGAGGCTATTTCTCAATGCTCACTTACCTCTATATCTGTATCCCTTCC TTAAATCAACAAGCAAGTCAAAGCCTTTTGAGTATTTGAGGCTTACCAGTCTTGGTGTCATTGGTGCCTTGGTGAAGGTT GATGATGGGGATATTATAAGCTTCCTTCTTTCAACAGAGATAATTCCACTCTGCCTGCGCACTATGGAAATTGGCACTGA GTTGTCAAAAACAGTTTCAACATTTATAATTCAAAGAGTTCTGTCGCATGATGTTGGTAAGGGATATATTTTTACTAGGA CAGACCGCTTTTGTGCAATTAGTCAAGTTTTGGGGGAAGTGGTGGCATTTCTTGCAGAGCAACCTTCACCTCGTCTTTTT AAGCATGTTATCCGATGTTATCTTCTTCTGTCAGAAAATTGGAGTGGTGGCGAAGCATTACGCAGATATTTTCCTGAAAT CTTCAGAGATGGCACTTTCAATAGTTGGCTTCAAGATCAAGACCAATCACTCATGTTGGGGCTACATCATTTGCTTCACA AAGTTAATCAGCTTCCTTCACAACAAGCTGGAGGTGGGTTCAATCATATGATGGCACCCTGA
Protein sequence (LotjaGi1g1v0026300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANLPQSLSVCSGGAAVVVKDQKTAAAERIILKLILELSNPDNRERALHELAQKRELVQDLELAPLIWHSFGTIAVLLQE IVAVYPVLSPPNLSPTQSNRVCNALALLQCVAAHHDTRRLFLNAHLPLYLYPFLKSTSKSKPFEYLRLTSLGVIGALVKV DDGDIISFLLSTEIIPLCLRTMEIGTELSKTVSTFIIQRVLSHDVGKGYIFTRTDRFCAISQVLGEVVAFLAEQPSPRLF KHVIRCYLLLSENWSGGEALRRYFPEIFRDGTFNSWLQDQDQSLMLGLHHLLHKVNQLPSQQAGGGFNHMMAP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 23 | 297 | 275 | 5.7E-113 | ||
| PANTHER | 25 | 299 | 275 | 6.4E-125 | – | |
| PANTHER | 25 | 299 | 275 | 6.4E-125 | ||
| SUPERFAMILY | 31 | 268 | 238 | 1.73E-5 | ||
| Pfam | 34 | 295 | 262 | 7.0E-107 | – | |
| Coils | 44 | 64 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA catabolic process | The chemical reactions and pathways resulting in the breakdown of mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes. | ||
| Cellular component | CCR4-NOT complex | The evolutionarily conserved CCR4-NOT complex is involved in several aspects of mRNA metabolism, including repression and activation of mRNA initiation, control of mRNA elongation, and the deadenylation and subsequent degradation of mRNA. In Saccharomyces the CCR4-NOT complex comprises a core complex of 9 proteins (Ccr4p, Caf1p, Caf40p, Caf130p, Not1p, Not2p, Not3p, Not4p, and Not5p), Caf4p, Caf16p, and several less well characterized proteins. |
Expression pattern of LotjaGi1g1v0026300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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