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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0027900 |
| Transcript ID | LotjaGi1g1v0027900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial glycoprotein family protein, putative; TAIR: AT4G32605.1 Mitochondrial glycoprotein family protein; Swiss-Prot: sp|O94675|MAM33_SCHPO Mitochondrial acidic protein mam33; TrEMBL-Plants: tr|V7BBP7|V7BBP7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0027900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:3369353..3371795) extracted from Lotus japonicus Gifu genome v1.2.
CTTTGCAGAGCATTTTTAATACTTTAGAGCTATTCATTTCAAATCCAAGTGAATCAAAGTTGCTGTCAAAAAAAAAAAGT GAATCAAAGTTGTAAGCAGAAACAGAAATGTGGAAGAGAGGGTTAGTCGGCGCCGTTGGCGCCCTCCGCCGCGCCGGCAC GTCTCGACCCCGGTACTACGCCACGATGTCATCGGCGGTGGACTCCATGATTCTCCGCTCCCTCAAGGATCACTACATGG AAGTCTCCAAAATGAACATGCCCCCTGTACTGCACTCTCTCTCTCTCTCTCTCTCTCTCCCTGCAACTTTCTAGGGTTTT TGTTTAGGGTTTAGGGTTCTTTCTTTCAATTCAATTCAATTCAGTTCAATTCCATTGACATGATGCGTTATTGTTTGCAA TTGCAGAGAGTGAGTCCTCCATCACCATTCAGCATCGTGAAGGGCGCATTGGATTCCAACGGCCCTGTCCTCAAGCGGAG CTACGGCGAGGAAGAGGTTATCGTCTACGTGATGCGCCTCTCCTCCGCCGACGACGATGACGGCGCCGTCGGCCAGCTTT TCATCCACGTCGACGTCTCCAAACCCACGCAGAACGAGTCGTTGATCTTCCTCTGCGGTCTCTATGAGGATGCTCTCGGC ATTCACTCTGTTTCCATGAGGCCTAAGCTCACAGAACACTCTGGCTACATCATCATCCCCTCCCAATACACTGGCCCTGT TTTCGCGTAACACTCTCTCTCACTTTTTTCTCAGCTCTAATTGTTATCATTGCTTCTGTGTTTATCTTTTATGTTAGAAA TTGAAAAGTGGGTTTGTGTAATTTCTCTGCTTTAAGCTCAAAGTTTTTCTCTTTTGTGAGGTGAGTTGTTAGAAACTAAA TGAGGCCATTATGGGTCTTGACTTAAGAGCTTGAGTTTTGAAATAGTTGGTTGAGTTGAGTGTAAATGTGGTGAAACCTA CAATCTGTTAATATGAACTTTTCATGGCTTTTTCTATTGGGGAGAATGGTTTTGAATGCATTTGATAATTGATAACAAGA GAAGATTGTCTTCATGGTAAGGAAGAAGCTAAGAATTTTTTGTAGCTATTTGCAATTTGAAGTTTAGGATTTGAAGAATA GAATTGAAGTAGATTAGCCCTCCACTAAGCAGTCTTCCCCTTCGGTAAGTGGAGCTAGCTTAGGCTTATGTTGATTCTAG ATCAAGTAGTTGTAACTTGTAAAAACACGACGAGGAGACGAAGGTGCACAACTAATGATAATAAGAACCTCTTAATAATT TGTAGAAGCTGATAGTCTTCCAGAGGCTTAGGCTGTGTTTGTGTAAACGTTTGGCTGTGCTTGAATAACTGTTTGTGAAA GGATTTTAATCTAATGCTACAATTTCATGCTTTCATGTTTTTGACTTGGTATATGTGTTTTTCTGTTTGTTTTTCATTGG AATTGTAAAAGATGGAAGTTTGTGTGTAATCCAAACATGCACTCACACACAGCACATGGACTCTTGTTTTCTTATGCAAC AACTGTTGTCAGAAAATATATTTGCCTTGTGAGTTCCTTCATTTCTTTTTGGATCTCAGCTTGAGTTTTCAATTGCTCTC AAGGTTATAGTGATTCATGTCGATGCTCTGTTGTGGCAAGAAATTATAGGCAGGGTTAACTTATGTGAAACTGATGAACT TTGTAAGTTCTTGGGTTGTTGGAAATTATGAACATCCATGTTATTTCAGAGCCTATTTTACCTTAAACCATGTATCTTCT GATTTTTCATCTAAATTGGAATGTTTGAGTGGGAAACTGGGAATGCCACAGGAACTTTTGGACTGACTTTTCTGTAAATT GACAGAGAACTAGATGAAAGGACGAGAGATGCATTTCACAGTTACATAGAGGAGCGAGGCGTGAACGAGAGCCTCTTCAA ATTTCTTCAAGCATGGCTATATGTGAAGGAACATAGAAATCTTATGCGGTGGTTCAAGACGATGGGCTTGTTCATTGATG GGAAGAAGCCAGCAGCAGGGGCTTAATCCTCTCAGAGAGGTCATGTATATGTTTGGTTTCATGTTGAGGAAACTACTCTC AGTAGCTTTTTTCAGAAGCACTTTTCTGAATTTGAAAACCTAACAAGTTTCCAAACATAAAAAAGGATAGATGAGATGAC GTTTGTTAGATTAAAATGGGTGGATTAATTTCTAGTATTGATGCAATAACTTCCACTTAATAGTGTTTTGATATCTAATT CACAGTGAGTGAAGTTATGTATTTAGAACATGTTGAATTTTGATGATTTTCTTTTAATTTTTTATTCTTTTCAAGAGTAC CTGAAATTTAATAGTTATTAATTATGACAGTAGTATTTATTTTGGACGACCAACACACCCACAGCGTGAAATTTTATCAA TTTATAGCCATTGGTGAAGTGGTATTGTATTGAAGATATTGCC
CDS sequence (LotjaGi1g1v0027900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGAAGAGAGGGTTAGTCGGCGCCGTTGGCGCCCTCCGCCGCGCCGGCACGTCTCGACCCCGGTACTACGCCACGAT GTCATCGGCGGTGGACTCCATGATTCTCCGCTCCCTCAAGGATCACTACATGGAAGTCTCCAAAATGAACATGCCCCCTA GAGTGAGTCCTCCATCACCATTCAGCATCGTGAAGGGCGCATTGGATTCCAACGGCCCTGTCCTCAAGCGGAGCTACGGC GAGGAAGAGGTTATCGTCTACGTGATGCGCCTCTCCTCCGCCGACGACGATGACGGCGCCGTCGGCCAGCTTTTCATCCA CGTCGACGTCTCCAAACCCACGCAGAACGAGTCGTTGATCTTCCTCTGCGGTCTCTATGAGGATGCTCTCGGCATTCACT CTGTTTCCATGAGGCCTAAGCTCACAGAACACTCTGGCTACATCATCATCCCCTCCCAATACACTGGCCCTGTTTTCGCA GAACTAGATGAAAGGACGAGAGATGCATTTCACAGTTACATAGAGGAGCGAGGCGTGAACGAGAGCCTCTTCAAATTTCT TCAAGCATGGCTATATGTGAAGGAACATAGAAATCTTATGCGGTGGTTCAAGACGATGGGCTTGTTCATTGATGGGAAGA AGCCAGCAGCAGGGGCTTAA
Protein sequence (LotjaGi1g1v0027900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWKRGLVGAVGALRRAGTSRPRYYATMSSAVDSMILRSLKDHYMEVSKMNMPPRVSPPSPFSIVKGALDSNGPVLKRSYG EEEVIVYVMRLSSADDDDGAVGQLFIHVDVSKPTQNESLIFLCGLYEDALGIHSVSMRPKLTEHSGYIIIPSQYTGPVFA ELDERTRDAFHSYIEERGVNESLFKFLQAWLYVKEHRNLMRWFKTMGLFIDGKKPAAGA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| Phobius | 5 | 13 | 9 | - | – | |
| Phobius | 14 | 21 | 8 | - | – | |
| Phobius | 22 | 219 | 198 | - | – | |
| PANTHER | 23 | 214 | 192 | 3.1E-92 | – | |
| PANTHER | 23 | 214 | 192 | 3.1E-92 | – | |
| Gene3D | 30 | 211 | 182 | 6.3E-28 | ||
| SUPERFAMILY | 37 | 210 | 174 | 2.75E-35 | ||
| Pfam | 106 | 210 | 105 | 2.1E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Mitochondrial matrix | The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation. |
Expression pattern of LotjaGi1g1v0027900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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