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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0028800 |
| Transcript ID | LotjaGi1g1v0028800.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Translation factor SUI1; TAIR: AT5G54940.1 Translation initiation factor SUI1 family protein; Swiss-Prot: sp|Q94JV4|SUI12_ARATH Protein translation factor SUI1 homolog 2; TrEMBL-Plants: tr|I3SF96|I3SF96_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0028800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:3445813..3454899) extracted from Lotus japonicus Gifu genome v1.2.
ATCACTAATAAACTAATTCCTAATTAAATCCTTCACCCATCTTCTTCATCATCCATTCTTCATCTCCAGATCTGTAGGTT ACCCTTTCAGTCCTAAGAAATTTCATCTTCTCCATCAACCTCCATCGTACCACTATCTTCTTCCCTCTCACCACCGCCGT CGCCGCCACAGCCACCACCAACGTCAGACCTACATCATCCTCCCCCTACCGCACCTTCCTCACCATACCCAAACCACCAG ATACAGATCTAAATCCTCCTCCCCTCCCTCACCTCATACTCCTCCTCAACTACTCTAGGTCCATCTCCGCTGGCCTTTGT CTCCCTCTCGATCTGGATCTCGTTTTGATGGTCCCTTCATCTTCATCTTTCAAATCGGGGGGTGGGGGTTGATTTGTGGT TGTGGGTTGCGGTGGGGATGGGTTGAGGTTGGTGTGGTTTGCTGGTGTGAGTTCGGTGGGGGTGCTTCTGGGCTGCACAA AAAGGAAGGCTTTTGAGAAGTGGGTGTAGCTAAATTCTGGATTTTGAGATTGTTTGGGTTAATGGGTCATTGAAGATCTT GCCTTTTTGTAGATTTGGTACTGAGGTGAGGAAAGTGCAGCGGAGTCATCAATGCTTCTTTGTGCCATTCCTTCACTCCT TATTTTCCTTTTTGACAATTTAGCCAAAGCTGGATGAAACAGGTTTGATGTTTTATGGGTTTTTTTGGGAGAATATATCA GGTTGATGACTACTGTGTGATTGTGGTTGAAAACTGGCTTTTAATGGTGTTTTGAGGTTCTGGATTGCTTTATGCTTCTG CCTTGTTGAACTTGCTGGTTCTGTAGTTGTGAGAAGGTGTTACGGTTTGCTCCCCTGCTGTTATTTTGGTTGCTCTCTTT GAAAGAGTGGCTAAGTTGTGTTTTGAATGGTTTCATGTTCTGGTTTTGTTGTTCTGGGTTCTTCTTGATGATTGCAGGTT CTGGTTTCATGTTAAGGGATTTTATTTAAATTAGGGATTTATTAAGTTTTTTAATTTTTTTTCTACTTAAATAAATGAGT TGGAATTAAAAAAATAATGTTTTATAATTTTTTTATTAAAAAATAATTATAAAAGCCACGTGTAATTGATGACTAGGACA AAATTGAGGTCTGGCAGCATTTGGTCTTAATTGAATTAAAAAAAATTTCTTAGGGACCCAATTTGATGCGAAAATTTTCC AGGCCCTGGAATTGATTCCCTTTACAAATTCAGGGGTCTTCTGATGTATTAAGCCTAAAAGTTATTAATATTTTGTTTAG CTAATTTAACAATACATCTTGAGTTTATTTACTACAATCAAAACACTTAAATATTTAAAATTATTCAGACTATCAATATA TTTTATAAATAGATTAATTTCTATGCATTGACAGTGTAAAAAGTTTTACACCGTCATTCAATCACAGCTTTCTATTTTCT ATTTTAGATATTATTAAATTCAAAATTAATTGTGAGCTAACAAAATGGAGGGATGCGATTGAATGCTGGTGTAAAACTTA TTTACACCGCCCGGTGCATAGAAATTAATCTCTTATAAGAATAGAGTGTACAAAAAAATCTATAAAAATCATACTGTAAT ATTCTCCTTTGCAGTGTGATCGGAATGGAATGATTTCTTTTTCTTTTGCAAAAGACTTGAAAAAAAAATACATTTTGTCT TGGGCTTTTCTTACTATCTTCTAGAGACAAAAATTATAAATAAGATTGAGGTGACACAAAAAATGAATTCTTATCTATAG TCAGCAAAGCACAGGACCAGAACAAGGGAACAGAATGTGCAAAGCAATTTAAGTCTTTGATTCTTTTTCCTCTCATTCTC TACCTTTGCTGCCTCACAAATTATCTTGTGTTTGGGTGCCTTACCACCAGTTATCAATCCCATCAGGAATTGGATACTCC ATTCACCCAAAGAACCTTATATTCTGTACGCCAACTCCTGAACTAATCATCATTCAATGTGAACTAATCATCATTCAATG TGGATTCTCTCCATCCAACTTCTCCCGTAGCATGTTTGGATGACCTTATTTTTTCTCATAATCAATTTTGACTATCGGAA GCTACTCACAGAAACTTATTTCCATATAACTAATTTTGGCTACATGGTACTCACTCATTGTTTTTTAAACATGTAAATTT TTAATATTTAACATTTCTGAAGATATAGTTAACATGGTCTATTACTTTATACATAAAAATTTCACTGCAATTTGCTCAGG TACACCCCACTATACTATATATGCCCCACCTCCCCCTTCCCATTCCTCACTTCTACTTTGATTTATTACCAGCCTTCCTC TCTCACAGGTTCGTCTCCCCTTTAACGTGAGATCCTCCTCCTAGCTCTTTGTCTTGAAAGTTCTTGTTTGAAAGATTATA CAGAAAGACACTTTCTTTTTTAATTTCACTTTTAAAGCTTTCTTGCTTTCTTACATATGAATCATATGATGTGAAAGAAA GGGGTGTTTAGTTTTTGACATTGAAAGTTAGGAGCCTTTATTTGCTTTGTAGTTCTTTTTAATAAGCATTTGCTTTGTAG TTTGATATCAATTAGCATGCTTGAGCTTTTGGTGGTATCATGCAGTGGCTTAAACTGAATAATTTCTGCCTTAGGTGGTA GTCATCACAAGTAAATAGAATGTGAAGACGGTTATTTATGTCTTTTCATCCATTTGTTTAAACTTTTGGATAATTGATTC ATAATATGATATTAGAGAGTCTATGGCCAATTGTTTAGATTTCAACATAAAGTAAGGTCGACTAGTGCATTTTCCATGTT TTAAAAACAAGTTAAACTTTTAGGATAATAGTAGATTTATGATAAGTGATTAGGAAATTCACAAGTAGGCGGTGGTGATC ACGAGTAAATAGAAAGAAACATAAATCAACCATGTGTCTTGTTCATCTGCTTAAACTTTTGGATAGTTGGTTCATATATG GTATTAGTCTCTAAGTCAAATTATCTAGTTACATTATTCTATTTAAAAGGTGAGTTCTGGCACAAGCTAAGTAGACTAGT GTATTTTCTATGTTTTAAGAACAAGCTAGGTAAACTTTTAGAATAATTGACTTATGATAGGTACATAGATGGTTGATTTG GAAATTCAGATTCCAAACAGATTTGACCCTTTCGCGGAGGCAAAAGAATCAGATGCGCCGGGGGTGAAAGAGTATGTACA TGTCCGCATACAGCAGAGGAATGGGAAGAAGAGCTTGACCACAGTGCAGGGGCTGAAGAAGGAGTTCAGCTATGAGAAGA TCCTCAAGGACCTCAAGAAGGAGTTCTGCTGCAACGGGAACGTAGTGCATGACAAGGAACTCGGCAAGATTATCCAGCTC CAAGGTGATCAGCGCAAGAATGTTTCTCACTTCCTTGTTCAGGCTGGACTTGTTAAGAAGGACCGCATCAAGATTCATGG TTTCTGACCAGTTAAGGTGTTTGTGTTTTTAGTTATTACTATATACATGCTATGCTATGCTTGTATTAAGTAAAGATAAT GACAGTGCATCTGAGTATATGAAATAAGTAAGGAGTTTGGAATATTTTGTTGATTTTTGTTTTATGATTGATAGGTTGTG TTAGGCTTGTGATAGACAATGTACTGGTTGTGTATTTAACATGAATCAAATGATCTGTATAACAGACCTCACTGAGTGAG ATAAGACTTTTGTTGATTGAAATATATGGGTGTTATATGGTTAGGTTAATGAATGGACTCAATTCCTCAGCGACTCACAG AAACCTTAGAAACATAATATAAAATCATTCAGGTGTCTTCTCTCAATATCCTAATTTTTTGGGATAGTTGGTTCATGACA TGGTATAAGAACTCTATCACTGAGTGGTATTGAGTTCGATCTTTATTGCTCCCAATATTGTAATAAAAAGTTGAATTTTA GTACAAGATAGTTGAGTGTGTGCGTTATCCCCACCTCAAGTCGAATGGACTCTAGCGTGAGGGGACGTGTTAGAAACGGA TAAAATCATTCATGTATCTTCACCCAATAACTTTTTCGGGATAGTTGGTTCATGATAGAACTACCTTCAATTCTTTAATA TTTTTGCTTGACCTCCAAGCTACTATTTAGTTCTCATAAGTAACAAGCAACCAAAGTTTCCCAAAGTGGAAGTACAAACT TTAATAGAGGATTTCAAGTGTAATAAATTTTATAATCTAACTTCTAACATCACCTTTCCCAGGTGAGTGAGAGTCCATAC TTCATTAGTGTCCAAAAAATTACAACAGCACTCAAAAATAGACTTTAAAGTGACAAGGAAACCAAAAACAGAAATAAGAA GCTTTACATGCCTATGACGTATGTTAACTTTTGGAATCCCTTCACCGAACTCAGAAGACGCATGCACCTTTTCACTAGAG GGTCTTGGCTTCAGACACTCAAACCAGTGACAAGGCGTGATTCAGAATAACTTGCCTTGCGGTTGGGTTCCACTCCTCAT CATTGCGCAAAATTCTTCATAGTTGATTTTACCATCCTAAGAAACCACAAAACTGAGTGTTAAGTATGGAACAAGATTAT AAACTTTTAAGTCAACAGAAAATATAGGCTTACATTATCTGCATCAACTTCTGATATAATTTCCCTGATTGTGGCTTCAT CACCCATACCATATTCCTTCATTGCTGTTTCCAGTTCATCTCTTGTAATAAACCTGTGATGGAATCAAACCAAAACAAGG GCACATGTGTCATTACGCTTGATTCTGTAATGAATGTGCTAAATGATGTAGGTAGAAATGGGATTTCTGGTATTGATCAT TGTTTATTTAACTGTAAAATGTGTATGAAACGAATTCGGATTCAGTGAAGTCAGAGGATCCTGAATTCAGTTAAGTCAGG GGAGAGGGGACTACAGCTATCCGATCCTACAATTCAGATATAAAGAGACTATTTAAGTGTGCAATAGCCTCTTTAATTCT GAGTCGTCTGATTAAGGTCGGACAACTATGGACCCCTGATTTCACCGAATGCAGGATTCCCCGATTGCAGGGAGTCCAGG TTCGTATGAAACTCAGTTAATAGACATGACAACTAACTTTAAACATTGAACCCAAAAGCCAAAAGATTACAGGGAATGGA AGGCACAATGCAAGTTTAAAGTCATAAGAAATTGAGGCTGAGAATGTATATTAAGGGAAAAGATGCCATAGAGTGACAAA TCTGAGAAGAAATCCTAAATCATGACAGAATGACTTACCCACTGTTGTCTTTATCAAAATATTGGAAGGCCTTGTAAAGG TGCTCATCTTTTTCTAACCTATGTCTATGCATTGTAGCAGTGATGAATTCTATGTAGTCAATTGTGCCATTTCCATCTAC ATCAGCCTAAATTCAAGCAAAGGGGTGTCAGTTCAAAATATTAAAGAAAAATAAAATAGATGAAAAATCTTGTAAATCAA CAATAGCTTACAGCATCCATAAGCTGTCGCACTTCAGCTTCACTAAGCTTTGAGCCAAGTCTTTGCAATCCTGTCCTCAG TTCTTCATAGGTGATTGAACCACTTTTATCTGTGTCCATGTTCGTAAACATTGCCTTCAAACCATGGATTTCTTCATCAG AAAGATTTTCAGCAATGACCTAAAAGAATTTTCAAAATCCACTCAGTTATTTTGACTCGGTAGACACACCCCTATAGCAC ACAGGTTTAACGAATTTAGAGTTATGGTGAGAACATTAGAGTGATAATTTATGTCTCTCAATGTGTAATTATTGACTGAA ATAGACATTGGCTTAAAATTAGCTTTTTCTATGTTTAACTGTTGATCCATCATCCATGGACACATGTAACAATAAGCAGT TAAGCATAAAAGGAAATTGTGGTCTCTTAATGCAGCTTGTGACTGGACTAACCTTGAGGGCAAGTTTTTTCAGTTTGTTC ATTGCTCTGAATTGCTTCATTCTTGACAGGACCGCGCTGTCTATTGGCTTGTCAGAAGCATTTCCACCTTCTTTAAGCCA TGGGTGTTCTAATTATTTATAGAATACATGGATTCAATTAGTAAAGAAATTATATTGCATTCAGCAAGAAAATTCTTAAG AATTCAGCAATCGTGCTAAAATTAACCTACCTAGAACCTGAGCAGAAGTAATGCGTTTCTTGGGGTCTTGTATAAGCATC TTACGAACAAGATCCTTAGCACTGTTTGATATGCTTGGCCATGGATGACTTTCAAAATCAATATGACCTTCCAATATGGC ATCAAATATTCCCTTTTCCGTCTCTACAACACATATTTTATGGAAAGAGTTAGTCAAGCCTAAAGCTAGCCTCTAGTACT AAATGATTATCATAATATGAAATTATCAGAATCTCAATGTATACCTGCCCAAAATGGAGGTACACCACATAGTAAGATAT ATAATATAATTCCTGCACTCCATATATCTATCTCCTTCCCATATCTACGCCGCAGAACCTCAGGAGCAACATAATAAGCA CTGCCAACTATATCCTTATACACCTTTCCTGGTAAGAATTAAACAGAGAAAGTTTAGTACAAAGTGAAAGACCATGTTTG GATCAGCTTCGCTTTCCTCAGAATCAATTCTGAAAGCTCCTGCCTTAAGTTGATTCCGACCGTAGAATCAATTATAGAAT GATTTCCAAACATGCACTAGTCTGCGTGCTTGTACATTTCCAGTGTACTTTATAACCAACTGTATAATGGAACACTCCTT TCTACTTACAGAAAAAAAAAGTAGTACATAAATCAAGGTACAAACTTGAATGTAAAGAAGTCTATCTGAAAAAAGCATTG TTACTGAAATGTGATTAACTACATGCATGCACAAGGAGAGAAGAATAATGAAAAGAAGCCTTATGAAGTTAGTTATTCAA ATCAGCATGCTAAAAAAATGATCATAAAACAAATTCAAGAGTTCTCAAACTTTCTAATTCTTCACAAATCAGGCTACTGA TTACTAGTATCGGCAATGCACTATTAGAAACTATACAAATTAAATTTCGATCTGAAAGAAAAGAATAAAATTCCAAGACT TCTCCAAAAAACTCCATATGCCTAAAAAGGTAGATTAAGTTTTAGACAGAAAATTGTACACAAATTTCCCTAAAAACTTC AGCAGTTAAAATTTCAATATGATGCTACAGTTTTAGAGGGCGAGCCTTGGTGCAATGGTAACGTTGCTGCCATGTGACTT GGCGGTCATAGATTCAAGTCGCGGATTCAGCTTTTTGCACAAATGCAAGGAAGACTGCCTACATTAGATCCACAAAGTGG GTCCGACCCCTCCTTGAATCTCGCACATAGCGAGAGCTTTATAGCACCAGAAACCACAGATATTAAATTTTTCAAGCTAT TAACAAGAAAGACCAGTGAATGGATAAAAAATTGTACCTTCTTCAATGAAGACTGACAAGCCAAAATCTGTGGCCTTGAG AAGTGCTTTTTCATCCTTACTAGCTAACAAGAAATTCTCAGGCTTGAGATCCCTATGCATGACACCCATAAAATGGCAGA TATGGACAACATTAACAATTTGTCTGCATATTGAAGCTGCAGCTCTTTCACTGTAGTGGCCCTTGGCAATGATCCTATCA AAAAGCTCACCACCTGCACAAAGCTCCATGACAACATGAACAGATTGTTTATCCTCATAGGCACCTTTGAACTCAACAAT ATTGGGTTGTCCACTCAAATGCTGCATGATCTGAATCTCCCTCTTGATGTCCTCCTTATCAGCTCTGCTAACAAGCTTCC TCTTTGAAATGGACTTGCAAGCATATTGCAATCCAGTTGAATTCTCAGTGCAGAGGTAAGTCACCCCAAACTGGCCTCTC CCCAATTCTTTCCCAAGTGTGTAGAATTGCCTGATAATAAGAAGTATTGATGAGATTTTGTCACATATAACTCAGGTACT GGTGCAGATATCAATGAGATTTTGTCACATATTAATAAGATAATATAAAAATTTTGATGAGATTTTTGTGACATATTACT AAGATATTGATGCAGCTGGGACTTTATTAGATATGACATATATCATATATGTTTTCTTCCATGTTTTCACCAATAAAATT GTGTGATGTCAATTGTAACCTTACATGGTAGTTTTTTAATAACATGTCACAATTTTATTTGTGAGACGGGTAATTGGACA CCAAATGGAGACAGAAAATTTGGATCTCCCAGCAACACCATATAGAACTGGTGCTGCAAACATTATGAGATTAGAGCATT ACAGTAATATGTCACAAAATCTCATCAATATGAGAGTTAATTACCTGACATCCTCCAATGGTTTCCCAAGAATTGTGTCT TGCCTGTGAACAGGCTTTGGGCTTGGGCTTAGTCTTGCGCTTGGTGCTGGAACAGTGGGCTTCCATGGACTCTTAGGTTC ATGTTTGTTAGGTAATTGGTAAGGTTGATGAGAAGGGGTATTTTTGTGATTGTGCACAACACCACCACCACCACTACCAT GTTTGTGCCCAATGTGCCTTGGCTCTGATCCTTTTTTACTCAGACAAACACCCATGATTATGACACAAAAACAGAAGAAC AAAAGAGATTTTGATTAAAGTGATTCAGTTAGAGCATAAAAAAGGATTGAACCCAGATCAGAATCCAATCAAACTATGCA GATTGATCACTACACTATGAAGCTTTGGATCAGAAATCAAATCCTGAAAATGCAAAAACTTAAATAGAAAAAAGATCCAA ATGATGGCAGGGGAAGAATATGCATAGAGTGTGGTGTAGGAGAAGCCAATGTTTGATGCTTTATTCAAAAGGGTGTCTGA GGAAAGGATCAAGGTGGTAACTAACTGGAACAAGAATTGAGTTTAAAATGGAACCAGTAACAAGGAACAAGTCAGGTGTT TCATACGCGTATTTACCTACGACTAAAACAAAGAGAGACAACAGAGTTCATATCATAGTAGAGAATCATGAGAAGCTTCC TTCTTAGTTCTTAAATCTCTCACGTTGTTCCTTAGATAAAAACAAATATAAGTACAGCATTTGAATATTTATATAGAAAT TTTTGTTAAGATTATATTCGTGTCAACTTGACCGTCGATAACGTGAG
CDS sequence (LotjaGi1g1v0028800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGATTTGGAAATTCAGATTCCAAACAGATTTGACCCTTTCGCGGAGGCAAAAGAATCAGATGCGCCGGGGGTGAA AGAGTATGTACATGTCCGCATACAGCAGAGGAATGGGAAGAAGAGCTTGACCACAGTGCAGGGGCTGAAGAAGGAGTTCA GCTATGAGAAGATCCTCAAGGACCTCAAGAAGGAGTTCTGCTGCAACGGGAACGTAGTGCATGACAAGGAACTCGGCAAG ATTATCCAGCTCCAAGGTGATCAGCGCAAGAATGTTTCTCACTTCCTTGTTCAGGCTGGACTTGTTAAGAAGGACCGCAT CAAGATTCATGGTTTCTGA
Protein sequence (LotjaGi1g1v0028800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVDLEIQIPNRFDPFAEAKESDAPGVKEYVHVRIQQRNGKKSLTTVQGLKKEFSYEKILKDLKKEFCCNGNVVHDKELGK IIQLQGDQRKNVSHFLVQAGLVKKDRIKIHGF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 111 | 111 | 3.6E-68 | – | |
| PANTHER | 1 | 111 | 111 | 3.6E-68 | – | |
| PIRSF | 1 | 112 | 112 | 1.1E-46 | ||
| Gene3D | 2 | 112 | 111 | 8.1E-45 | – | |
| SUPERFAMILY | 3 | 112 | 110 | 3.27E-33 | ||
| TIGRFAM | 5 | 112 | 108 | 1.2E-50 | ||
| Pfam | 27 | 100 | 74 | 1.0E-23 | ||
| CDD | 28 | 111 | 84 | 1.34532E-44 | ||
| ProSiteProfiles | 30 | 100 | 71 | 22.878 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation initiation factor activity | Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. | ||
| Biological process | Translational initiation | The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. |
Expression pattern of LotjaGi1g1v0028800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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