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LotjaGi1g1v0028800.3

Overview

Field Value
Gene ID LotjaGi1g1v0028800
Transcript ID LotjaGi1g1v0028800.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Translation factor SUI1; TAIR: AT5G54940.1 Translation initiation factor SUI1 family protein; Swiss-Prot: sp|Q94JV4|SUI12_ARATH Protein translation factor SUI1 homolog 2; TrEMBL-Plants: tr|I3SF96|I3SF96_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0028800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:3448921..3449259) extracted from Lotus japonicus Gifu genome v1.2.

ATGGTTGATTTGGAAATTCAGATTCCAAACAGATTTGACCCTTTCGCGGAGGCAAAAGAATCAGATGCGCCGGGGGTGAA AGAGTATGTACATGTCCGCATACAGCAGAGGAATGGGAAGAAGAGCTTGACCACAGTGCAGGGGCTGAAGAAGGAGTTCA GCTATGAGAAGATCCTCAAGGACCTCAAGAAGGAGTTCTGCTGCAACGGGAACGTAGTGCATGACAAGGAACTCGGCAAG ATTATCCAGCTCCAAGGTGATCAGCGCAAGAATGTTTCTCACTTCCTTGTTCAGGCTGGACTTGTTAAGAAGGACCGCAT CAAGATTCATGGTTTCTGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0028800.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTGATTTGGAAATTCAGATTCCAAACAGATTTGACCCTTTCGCGGAGGCAAAAGAATCAGATGCGCCGGGGGTGAA AGAGTATGTACATGTCCGCATACAGCAGAGGAATGGGAAGAAGAGCTTGACCACAGTGCAGGGGCTGAAGAAGGAGTTCA GCTATGAGAAGATCCTCAAGGACCTCAAGAAGGAGTTCTGCTGCAACGGGAACGTAGTGCATGACAAGGAACTCGGCAAG ATTATCCAGCTCCAAGGTGATCAGCGCAAGAATGTTTCTCACTTCCTTGTTCAGGCTGGACTTGTTAAGAAGGACCGCAT CAAGATTCATGGTTTCTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0028800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVDLEIQIPNRFDPFAEAKESDAPGVKEYVHVRIQQRNGKKSLTTVQGLKKEFSYEKILKDLKKEFCCNGNVVHDKELGK IIQLQGDQRKNVSHFLVQAGLVKKDRIKIHGF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10388
1 111 111 3.6E-68 –
PANTHER
PTHR10388:SF41
1 111 111 3.6E-68 –
PIRSF
PIRSF004499
1 112 112 1.1E-46
IPR005874
Gene3D
G3DSA:3.30.780.10
2 112 111 8.1E-45 –
SUPERFAMILY
SSF55159
3 112 110 3.27E-33
IPR036877
TIGRFAM
TIGR01160
5 112 108 1.2E-50
IPR005874
Pfam
PF01253
27 100 74 1.0E-23
IPR001950
CDD
cd11566
28 111 84 1.34532E-44
IPR005874
ProSiteProfiles
PS50296
30 100 71 22.878
IPR001950

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003743
Molecular function Translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
Subterm of
GO:0006413
Biological process Translational initiation The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
Subterm of
Part of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0028800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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