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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0032100 |
| Transcript ID | LotjaGi1g1v0032100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT1G27180.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K8I9|G7K8I9_MEDTR Toll/interleukin-like receptor-protein; Found in the gene: LotjaGi1g1v0032100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:4090846..4095286) extracted from Lotus japonicus Gifu genome v1.2.
TATGTGTTCCATACTTTTAAAGTGTGATCAAATTTGTTTAGTATATCGCCCTTATGAGATAAATAGTAAATATTGCTCAA ATGAGGTGTCTATCAACAAATTTTCTTGTTGTGATCGTATCTATAGTCAATAAGCAACCATGTATCAATAATAAACTAAT AAGCAACCAAGTCACGCATCATCATAATTTGATTTTTTTTATATTTATGAAAGAAATGAAAGTGATCTCTCACACGTCAC GACATACACCTTTTTTATACAGCTTAAATGAGATAATTTGAATGAGGTTAAATCACCCTAATCGATGATTCAAACAACCT CTAATTAAATAACACAACTTGGCTTGTTACTTGTGGCCTTGGTGCAGGTTGCGGGACTATTCTCTTATTTCAATATATAT AGTCTCGTGAATCATGCAATATCATGCTAATTAAATAGTAGTTTATTGATTTTAAACCGGAGGGATGGAGTGGTTCCAAC CACCAAGTAGATGCAGACAAAAGAGAAGTCAACTAGCTAGTACTAGCAAACAACTCTCATAGTAATTAACAAAAGATGTA TAACATTAACATATCCTGCTATAGGTACTGGTAGTAACGAACGACAGGTGTTCATTTAATATTTACGATTGATCGATGTT GAATGAAGGTGCAGATGCCATTGATGAACTCAGCACGACAAGGACACAAAGATACGATGTTTTTCTTTCTTTTTGTGGGG AAGACAGTGGCTCCACCTTCACCGGTAATATCTATAATGCTTTGCGCCAGAAGAGAATCAAGACCTTCTTCCAACCTGAA AATGATGATGGCGAGCCGACTTCACTTTCTGTTGACAAAGCAATTCAAGAATCAAGGCTCATAATTGTTGTTTTCTCCGA ACACTATGCAGTCTCTGCATCGTGTCTCAATGAACTTGTCAAGATTGTTGACGTTATGATAATGAACAATCAGCTGGTTT GGCCCGTCTATTACGGCGTGGAAGCCCCGGAAATAAGGCATCAGCGAGGTAGGTATGGTGAAGCCATGGCTAAGTTTGAA GAAAGATATGAATTTGAGAGGGTGCAAAAATGGAGGAACGCTTTGTTCAAAGTCTCCGGGTCAAAAGGATGGGCTTACTA CCAAGATGTGTAAGTACCATATATCCAAACTCGATCTCTATTTTCAATTCATAGGAGTGTTTATTATTTAACATGATCTT AAATTGTTTGGACATTTACAGCATATTAGATAACTTAATTAGGTATAATATTTTTTCTAAATTAAAGTATGAATTTGGAT TGGCGTTGCTCCGGTTCTTTTTTAAAATGAGAGAGTTTAAAACTCTTCAATTCATTATTTAGTGTAAAATGACTAAATTG TAAATAATAATAGTTGTTATAAAAAAAATTAAGCTTGTGTCCCCGTAGGATAGCTCAAGTGGTAGGAGTTAGGAGACATA AGGTTGGGTAGGGGGAGGTCCAGGAATCGAATCCTGGCATAATAAATATAGAATATAACTTTTTAAAAGTTTTAATTGAA TGATCGAAACATCGATCTTCCATAATTAACTTTGTTATTGCCTTTTAATTTATACTAAAGTAAGTCAAGCTGAAGCTTAA CTTTGCTACACTGAAGTAATGATTCTGATTAGGATGAGAGATATAATTGCAATGTAAAGTTTGTAGTACTAGTATGAACT TATTAAAGAACTTGTGCTTTAATAGGTATGAATATAAGTTCATTCAAGAAATTGTGGAATCAGCCGTCCAATCGTTATCA CGCTTTGATATTTTTCTTAGTTTTAGTGGGGAAGATACACGATATTCCTTTACAGGATTTCTCTATCATGCTTTGCGCCG AGAGGGGTTCAAAACCTTTATGGATGATGAGGGACTGGTGGGTGGAAATGAAATTGCAAAATCTCTTCTTGATGCAATTG AAAAATCAAGGCTTTCCATTATTGTTTTTTCTGAGAATTATGGATATTCCTCATGGTGTCTTGATGAACTCGTGAAAATT GTTGAATGCATGGAGACTAAGAAACAATTGGTTTGGCCCATATTTTACAAAGTTGAAAAGTCGGATGTAACCAGTCAAGA AAATAGTTATGAGCATGCCATGATTGGACATGAAAAGAATTATGGAAAGGACTCAGATGAAGTGAAAAAATGGAGGTCAG CTTTATCTGCAATGGCCAAATTGGAAGGACATAATGTCAAAGAAAATAAGTAAGTACCATAGAATACTTTTACTTACTTC TGCCTTGGATTGATATAATTTTGCTAATCCTTTCTGATAATCTTTGAAATTTTCAAACAAAAAACCATTCTTCTTGGTCT AGGAGACATGGTTTATATATTTTTGTTGTTGTTAAATACGTTCTAGTTTTAGTGCAGTTATATGACAATTTATTTTTTAT GAAGATTAAATAGTCATGCTTGATTTTATTGTTCTAATAATCAAATTCTTATCTGATTAATAGAAAGAAAGAAAAAATCA TGGATAAATGAATTGGGGGCCTTGTATTTTTGCAGGTACGAATATGAATTCATAAAAAAGATTGTAGAAAAGGCCATTGC TATTGAAAATCACATGTGATACCAAGTCCTTGCTCGAATGACAACTAGAAGCTTGTACCAAAAAAAAAAGAATGACAACT AGAAGGAAGACTTGAGTTTTTCTTTCATTAAAAGTGCCTTCGAAGCATGGAGCCAACAAGTGGTGATTAATTTTACAAGC AATTACCGTATTATTAGAAATGAATAGCAATTGTGAACTAATAGGGAAGACCTCCGGTTCGATCATGGTTAAACCAATAA ATTGTGAACTAGTATTTTTACCGGTTTAATGATTGGTTTGGTTTTTTAAACACTTATTAGGATATTGACGGTTTAGATAA TAGTAATTGAACACTTAATCTCATCTCCAACAAATTTCATGTTCATAAAATTATTTCTTAACATAGAGAAATCATATTTG GGCCTATAGCATATGAGAAGTGAAGTATAGAAAAGCTCTCAACAAATTTCATCAATGAAGTAAAAACTGATTATTCATCA TGAGAGATCAAGGTACATTCAGCAACTATGATATAGCTCGATCGGGATTGAAATGATATGTTTCAACCATGTCCCTGAGG GTTAGCTCAAGTGGTAAGAGCTAGAGACATAAGGGTTAGGGGGAATGAAGAGTCCATGGTTCGAACCCTGAAGAGAAACT AATTTACTTACATTACTAACAACTAATATTTACCTATAAAAAATTGTTTCAACCCTATGTCCCCAAACATGTCCCACCAA TGAGTAAATGACAGCCCAATTAAAATTTCCAACTCATCACTCTGACTCATCTAACCATGTTAACAGAGTCACTTCCCCTA TCTCCGTCATCAAAACAACATTCGTCCAATCCCAACGCAGATCCTCCTCCACCGCCAACAATCCAAATCCTTGTACTGCC CATTGTCCCTGCCTCTCTGCTCTCGACCGCAACGAGCGGGATGTCCAATATGGCATGTGTCTATTTCGTGAAGGTAAAAT CAAAAGTCTTTGGAGTGTTTAAAATTTCAAGGCCCTTGTTGAGAAATAAAGTGGGAAACATATAAAAGTACTTAGAAGTG GCCGTGACAAAGAGTTTGAAAAATCATATGAGGACGAAGGCATAGAGGGACAGATCACAATCACATATTATCCACAACAA AGTGATGCTTGGAAGAGGAAAAAAATTGCACATTTATGAAAATGACCAAATCGATGCTCAAGGAAAAAGGAATGCTTAAC ACCTTATAGGCAGAAGTAGTTTACACTATTGTTTGCATACTCAACAGATGTCCAACCAAGGCAATACAAGGTAAGACTCT AATAGAAGTTTGGGAAGAAGTCGTCAGAAAAGCACCTTAGAGTCTTTGGATCTATATGCTACATTCATTGGGCGAACTAG CGATGGGACTATGGTAGTTAATCTAATATCATACCACTAATCCATGTTTTGTTTTCCCACAAGCTCTCATAGATCATGGG GTGTTAGTGTCTTATCTATCCTAGTCATTCGGGAAGATTCTTTCACACCTATTTTTCTTATATTGACTGGTTCAATAGTG GAAAACCATCTTTCCTATTATTAAGGAACTAAACCACTTGTTTTGTGCCCACGTGAGAATATCCCAAAACCTTTGAAATA TCTTTCCTTTTCTTAACCTTATGTTTCCACCCAAAAATCTCGTCAAGGTGAATGATTACTCACGCTGGGCTCTCCTTGCT TTACTATGCCAACGTCTAATCTCATATCTTCGACTATATTTCTAACGGCTAGTCCTTAAGCTGCAACGTAACTAACTTGT CTTTTCAGCTTTCAAAATATCTGTTACATATTTTTGGTGCCCATAACTACAAGCATTTCGAAAGTCAAATGAAAAATAAG AAATATAAGTGATAAGAAGGTTGTTTCAGAGCAAAAGCGGC
CDS sequence (LotjaGi1g1v0032100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGAATGAAGGTGCAGATGCCATTGATGAACTCAGCACGACAAGGACACAAAGATACGATGTTTTTCTTTCTTTTTG TGGGGAAGACAGTGGCTCCACCTTCACCGGTAATATCTATAATGCTTTGCGCCAGAAGAGAATCAAGACCTTCTTCCAAC CTGAAAATGATGATGGCGAGCCGACTTCACTTTCTGTTGACAAAGCAATTCAAGAATCAAGGCTCATAATTGTTGTTTTC TCCGAACACTATGCAGTCTCTGCATCGTGTCTCAATGAACTTGTCAAGATTGTTGACGTTATGATAATGAACAATCAGCT GGTTTGGCCCGTCTATTACGGCGTGGAAGCCCCGGAAATAAGGCATCAGCGAGGTAGGTATGGTGAAGCCATGGCTAAGT TTGAAGAAAGATATGAATTTGAGAGGGTGCAAAAATGGAGGAACGCTTTGTTCAAAGTCTCCGGGTCAAAAGGATGGGCT TACTACCAAGATGTGTATGAATATAAGTTCATTCAAGAAATTGTGGAATCAGCCGTCCAATCGTTATCACGCTTTGATAT TTTTCTTAGTTTTAGTGGGGAAGATACACGATATTCCTTTACAGGATTTCTCTATCATGCTTTGCGCCGAGAGGGGTTCA AAACCTTTATGGATGATGAGGGACTGGTGGGTGGAAATGAAATTGCAAAATCTCTTCTTGATGCAATTGAAAAATCAAGG CTTTCCATTATTGTTTTTTCTGAGAATTATGGATATTCCTCATGGTGTCTTGATGAACTCGTGAAAATTGTTGAATGCAT GGAGACTAAGAAACAATTGGTTTGGCCCATATTTTACAAAGTTGAAAAGTCGGATGTAACCAGTCAAGAAAATAGTTATG AGCATGCCATGATTGGACATGAAAAGAATTATGGAAAGGACTCAGATGAAGTGAAAAAATGGAGGTCAGCTTTATCTGCA ATGGCCAAATTGGAAGGACATAATGTCAAAGAAAATAAGTACGAATATGAATTCATAAAAAAGATTGTAGAAAAGGCCAT TGCTATTGAAAATCACATGTGA
Protein sequence (LotjaGi1g1v0032100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLNEGADAIDELSTTRTQRYDVFLSFCGEDSGSTFTGNIYNALRQKRIKTFFQPENDDGEPTSLSVDKAIQESRLIIVVF SEHYAVSASCLNELVKIVDVMIMNNQLVWPVYYGVEAPEIRHQRGRYGEAMAKFEERYEFERVQKWRNALFKVSGSKGWA YYQDVYEYKFIQEIVESAVQSLSRFDIFLSFSGEDTRYSFTGFLYHALRREGFKTFMDDEGLVGGNEIAKSLLDAIEKSR LSIIVFSENYGYSSWCLDELVKIVECMETKKQLVWPIFYKVEKSDVTSQENSYEHAMIGHEKNYGKDSDEVKKWRSALSA MAKLEGHNVKENKYEYEFIKKIVEKAIAIENHM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 181 | 169 | 1.1E-119 | – | |
| Gene3D | 13 | 184 | 172 | 3.2E-51 | ||
| SUPERFAMILY | 15 | 159 | 145 | 4.19E-28 | ||
| ProSiteProfiles | 18 | 156 | 139 | 19.235 | ||
| SMART | 19 | 156 | 138 | 3.4E-19 | ||
| Pfam | 20 | 176 | 157 | 6.4E-33 | ||
| PANTHER | 182 | 347 | 166 | 1.1E-119 | – | |
| SUPERFAMILY | 183 | 326 | 144 | 1.02E-37 | ||
| ProSiteProfiles | 183 | 324 | 142 | 28.541 | ||
| SMART | 184 | 324 | 141 | 2.7E-39 | ||
| Gene3D | 185 | 352 | 168 | 3.0E-59 | ||
| Pfam | 185 | 345 | 161 | 8.4E-40 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
Expression pattern of LotjaGi1g1v0032100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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