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LotjaGi1g1v0032400.1

Overview

Field Value
Gene ID LotjaGi1g1v0032400
Transcript ID LotjaGi1g1v0032400.1
Lotus japonicus genome version Gifu v1.2
Description Disease resistance protein (TIR-NBS-LRR class); TAIR: AT1G27170.1 transmembrane receptors / ATP binding protein; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K8F2|G7K8F2_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi1g1v0032400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:4139845..4146370) extracted from Lotus japonicus Gifu genome v1.2.

CAACAACAAAGCACTATCACCATCATCATCATCATCATCATCACACCTTCTTCCCTTCCTCACATGGTAGCCGCCACCAC CACGTGCCACACCACCACCCATGGACGAGTACTGCCGCACCACCACCACCCCCCATGGACAACGTAAAACAGAGAAGACA GAACCCTAACCACCGCCACCTTCAACTCTCAATTCCGGCGAATCACGATCATCATTTGGAGAAACCAACACCACCATTGT ACTCCCCTCATCGTCCGCAACAAAACCCCTCAACCAATTTGTCGTTCCGCCGTGAGCCGCCGCCTGAGGCGATTTCCGGC GTGCCCGCAGCACCACATGAGCCACCATCTTCTCGTTTTTTTTCCTTTTCCTTGTGCAGCACCACCACTTCTTCTTCCTC TCTCCATGAGACCACCACCGCTGGCCACCCACAACATCACCATGGACAGCCACAAGCTTTCTTCAATGAGTCTTGCAGCC CCAAACACGCGAGCCACCATCACCACGCAAGGTTCTTCTCTTCATGGCCGTGAAGCCATCACCATCATCATGGTGGGGGC GAGATCATCACTTTCTATTGATCATCACCACCCAGGTAACCCCACTTTCTGTTTCTGATCTGGGTGCTTTAAAAGTTAAA TCTTTTAAAAATTCAAAATATATTTTAAAAGTAATGTCAGATGTTCATTAAAAATCCTAGAATTAACTGAGTTAGGCTAG TTTCAATTTTGAGGTCTTCAATGGTGTTTATTGTTGAAGGCTTTTGAATTGGGATTGTGTTCTGGAGAACTTGAAGTGAG AGTTGTTTGGCACTGAAGACTGAGGACTGAGGAGAGAGGATTTATTTTTTACAATTTTTTTTATATTTTTATTTTGTAAA TTACTACTATGACCCTTGGTCCACCGGTGGACCATTTTGAAAATTCCTCACCCTAACCGGCACCTGAATGAATAAAGATT GTTAAAACAAATCTGCATAGATGCAAGTGGATAGAACGAAAACAACTAAAATTCATGTCCAATTTATTTTTGGTGCTTTT TGTGGTACTTTAAGCCAGATTAAGGTGTGATACTCAAAATGAGTTGGTTCAATAACAAAGACTCATGTACTAGTTAAAAT TTTGATTGTTATATCGTAGTAATGCAGCGTTCCATTCTTAGGATGTGAGATTTGCATGTTGTGTTTTTTGAGCTTTGTTC ATCCATTAATCATGGTCATTTTACACGCATTTCCATCACCATAATTCATTTTCACCACTTGTCCATTTAATGTGGGTACC ACACGTCCACACCCAAAACAAAATTCAAGATACCATAAAATTTATCATTTTTAAGTGTAAACACTTAAATATATGAAGAC AAAAGTAACATAAAAAATGTGATATGCGATGTGATATAAAAGGAACGGAGAGAAAAAAAATGTTAAAGTTTTTGTTGCTG TTTGGTGGTATATAAATCGAGATCCCATTGGAAAAGAAAGATCATCCTTGTTAATTAGTTAGTCTTTTCCAGCTAATACA ATACACTTCATTTACTCTTGCTATCCAACCATAAAAAACACCAACACCCGTTTATGGCAACCGAACTCATGAAGATGCGC TACGATGTCTTTCTCTGTTACCAAGGGGAAGACACACGAAGCTTCACAGAATATCTCTACTATGTTTTGCGTGACAAGAG ATTCATAACTTTCATGAGTACAGGTGGATCGAAGAGTTATGAGAACAACGAGGGTGAAATCTCATCAAGTGTTCTTAAAG CATTGGAAGAATCAAGGATTTCAATAGTTATTCTCTCTTATAACTTTGCATCATCTGCTAGTTGTCTCAATGAACTTGTC AAGATCATCGAGTGCAAGAGATGAAAAACCAGCTGGTTTTAACAATCTTTTTCGCCATCGATCCGTCCAACGTTAAGCGT TTGAGGGGTACGTTTGGCAAAACCTTGGAAAATCTTGAAGATCGGTTTATAGAGTACAAGCAGGAGGAGGAGGTGCGGAA ATGGAGACCAGCTTTGCTTGAATGAAGTTGCCAAATCACCAGCAATTCATTTCAAATGGTACGTCAAATCAGATTATTTT AAAAAGCTATTTTGATTCTCTTTTTTTTAAAGCAAAACAGTTTTATTGAACGACTATTTTGATTCACTTATTAGAAATAT CTATTTTGATAGATGAGGGAAAAGAATAAAAAAAAATTAAGTTTATTAGTTTTTTTAATACATGGAAAGATAAACTATGG TCCTCAAGGGTTGATCCTGGAACCTCTCTATCCCCAACTCATGTCTATCAACTCTTACCACTTGAACTATTTTTCGGGAA CTTTTATTAATATAACTAAAAACAAATCAGATTATGTTTTTCTTCAAATTATTTTTTTAAACAGCTAAAAATTATAACTT TTATATTGGCTTAATTGCACTTTTGCTCCCTGATCTTTCGTCTTTGTGCGATTTACCTCCCTCATCTTTAAAATGAGCGA ATTCCCTCCCTCTTCTATTAATATGTGTGATTTAGGCCCTTCCGTTAGTTAGCCGTCCAATTGCTAACGGTGGTTGCTAT TTTCACCCCCCTTTTACTAACCACACCCCCTTATCAGAAATAAAAATAAAAAAATAAAAAATAAATTAAATAAATTAAAT AAAATTAATAGAAAATAAAAAAAACTATAAATTAAAAAAAACTGAAAAAATATTTTTATAAAAATCAAAGAAAAAATAAT AAAATAAATGAAATAAGTTAAATACAATTAATAGAAAATGAAAAAATATTTTTATAAAATCAAAGAAAAAACTGAATTTT TTTTTATAAAAATCAAAGAAAAAAATGTTTTTATAAAGTCAAAGAAAATAACATATTTTTTTTAATTGAAGATAGAAATT TAAAAATAAAATAAAAGAAGAATTTGTTTCTATTTGCACCACCTACACTAAATTAAAAATAATTATTCTTTTATTTTATT TTTAAATTTCTATCTTCAATTAAAAAAAATATTTTATTTTCTTTGAATTTATAAAAACATTTTTTCTTTGATTTTTATAA AAATATTTTTTTCAGCTTTTTTTTTTTATTTTATAAAAATGTTTTTTCATTTTCTATTATTTGTATTTAACTTATTTCAT TTATTTTATTATTTTTTCTTTGATTTTTATAAAAATATTTTTTTTCAGTTTTTTTTTTATTTTCTATTAATTGTATTTAA TTTATTTAATTTATTTCATTTATTTTTTTATTTTTTAGCTTAATTGCACTTTTGCCCCCTGATCTTTCACCTTTGTGCAA TTTACCTCCTTTTTTTATTTTTATTTTTATTTTTATTTCTGATATGGGGGTGTGGTTAGTAAAAGGGAGGGTGAAAATAG CAACCGCCGTTAGTAATTGGACGGCTAACTAACGGAAGGGCCTAAATCGCACATATTAATAGAAGAGGGAGGGAATTCGC TCATTTTAAAGATGAGGGAGGTAAATCGCACAAAGGTGAAAGATCAGGGAGCAAAAGTGCAATTAAGCCTAATTTTTAAA CATATGCAGTCTTAGAGCATCTCCAAATGCAAGATTCTTAGTTCTTATTTTTTAGCTAAGAAATAAGAACTGAGTTCTTA ACCATTGTAGAGAATGACGTGGAGTTCTTAGTTCTTAAAAATAAGAACTAGGTTCTTATATAATGAGTTTTACTTTTTGA GTTCTTAGCATAAAAATTTATTTTTTCTCTCATCCAAGTTACTTTATTACTTTATGAGTTTTGTTTTATTACTTTATGAA AATAAAAAGTATAAAACTATAAATAATGTGGTTGGTGAGACCAAATGAATAGTGTTAAGAATTAAGAACTCATGGTTGGA GCAAAATTGCTTGAGAGTTGCTTAAGCATATGTGGCAGTACGGGCCCACATGAATAATGCTAAGAACTAAGAATTAAGAA CTAGCATTGGAGATGCTCTTAGAGTGCGGTTGTTTCAGTTTTTTCTTTAAGATAATCACTTTTTTAATTAAAAACTATTT TTAAAAATTTTAAGATATTTGTTTTATCTTATGAAAAATCATTATTTTGAAAGGAAAAAGTTGAAGTACGAAAAATTACT TTAAATAGTCTATCAGAAAAATCTATTATAATTGATGAAAGCAATAATGAGAAAGTGATTTTAGTTAACGTAACCAAATA CAAATCAATTTATTAAAATTTGTTTCTAATTGATAGAAAGAAAATGAGAATGTTTGTAGGTTCCATCTTGAATTTCAACT CACGGAAGGGATCGTGAAATGGGTCATGAAGCACTTGATCCGCTACGATATATACCTTAGTTTCAGTGAGAAAGATACTC GCTACTCCTTTACAGGTTTTCTCTCTGATGCATTACATGGGGAGGGATTCAACACCATCCTGAAGGATGAAGGATCTGAG AAGGAAGACCAGATTTCCCAATCTCTTGTTACATCAATTGAAAACTCAAGGCTTTTAATCCTTGTTTTATCTGAAAATTA TGCATATTCTTCATCATGTCTAGATGAGCTTGTTATGATTATTGACCTCATGAAGAATCAAAACCGACAAATTTGGCCTG TTTTTTATAATGTGGAACCATCAGATGTAAGACATCAAAGAAATCATTATGGGAAAGCCATGATTCAACATGAAAGTAAA TTTGGAATAAACTCTGAAAAGGTACGGAATTGGAGATCAGCTTTGCTTCAGGTCGCCAACTTAAACACTATGTTTGGTTG TGAAGAGAGAGATAGAGAAGAGAGAGTAGAGAAGAGAGAAGTTGAGTAGAGAGAAATAGGTGAGAGATAGAGTGGATTTA TTGGGTTGTTTGGTATGGTAGAGATAAAGAAGAGAGAGATGAGAAATAATGATGTGGAAGAGAGAGAAAAAGTTGACTTT GAATTAAAAAAATCAATTTTAAATACAAAAAGTAAAAAGTTTATATCATGTGCAAATAGTAGCGGTTTGAAACCGCCACT AAATGTCAATTACGAAAAAAAAAATAAAAAAAGAGAGATCAACCGGTTACTGTTCCTTTTCTCTCCAATTTGGAGAGACC CCATTTTTGGGTGGGTCCCACATCAAAAGCCCCCTCCCTCCTCCCTCCTCTCCCCCACCAAACAAGGGTGGTTCTCCTTT CCTCCCTCTATCTCTCTTCCTCTCATCTCTCCCTACTCTAACTCTCCACAACCAAACAAAGCAAAAAGGATGGCACATGA AAACTAGGTACACAATATAATTTCAAATACTTCAATTATTTCACTTAATTGTATGATCAATCATTTTTTTCTTTAATACG TGTCAACAAATATTTGTTTAGTTGTCACTCCCAAAAATGTCTTTCTTGAAGATCAAACTAGACCAACGGCTTGTTCGTGA TCAATCAATTATATCTAGTACATATTGTTAACTACTCTCTTTATTTTAAAATAACTTTATTTCATAATAATTGTCCACTT AAAATATCAAGAAAGCATTACTTGATGTTTTTCCATATATATTAATGTCCATGAATTGAGGTAAAAATACATTCAAAGGG TAAATTAAGAAGACAAATAATATATTTTAAAAAGTTAACAATATTAATTACAATTCTTAATATGTGTTTCTTCTTTTTTT GAATAATTATTTCAAAACAGAGAGAGTATATTATTACTAATTGTCATTTTTATCATCAGAGTTGTGAGTTAGTAACCCAC ATGGGTCATTTAGACAACCCATAAAATAAATGTTTTTCATAATAATCCATGAATAGTTGAATAAATATATAGGAGGTCAC TCTTTGTAATTATTGTTTCAAATGTGACTTTATTTACAGTTGTATTGTGTTTGAAATCTATTTATCTGAAAATTTACTAT TCAGCCTTAATTTTAATTAATTAATTTGAGTCAAATAAATTAAATCTCAGTATTGGAAATAAAATGACAGTGTTAGGCCT TGTACTTTTGCAGGTATGACTATCAGGTTATAGAAAAAATTGTGGCAGCGGCTATTAAACTTTACTCCAGGGTCAACTAA AAGCAAGAACAATTCAATTGAAGCATGCTCAGAAACTGATAGTCATAGTAATGCTCAATACTGAAAATATACCATGTGCT CAAGTTACTTTTACTTTCGATGTGCCAATTTACTTTTAGATTATTTGTGTTTATTCATATTTTCTTACTTGATGTCCTCG AAAGTTAACTCAAGTGATGAGAGCTAGGAAACATAAAAGTTTAGAAGATCGGTGAAGGGTTTGGTCTTTGACGTTGAGTG GGCTTTAGCAAAGTCACTTTGTATTGTTATTGTCCTTGTGCTCTTGTGTTCTGTTTCTCTGTTGTACTGCCTAAGTAATG GCTCTCCTCCTTTCCCTTTTCTTTCATTCTTTTCCCCTTCTTTTTCCTCTTCTTCTCTTTGTTTCTCTCAATCTCTCTTG TACTTTGGGTTCAGCACCCCTAGTGTTTTTTTATAGGTACATCTGTTATTTGGCTTCCCAAAAAAAATTCACTAAAAAAA ATTCTAGAAAATGTGTAATGGCTAAACGAATCAATGTGATCAGTTT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0032400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAGCACTTGATCCGCTACGATATATACCTTAGTTTCAGTGAGAAAGATACTCGCTACTCCTTTACAGGTTTTCTCTC TGATGCATTACATGGGGAGGGATTCAACACCATCCTGAAGGATGAAGGATCTGAGAAGGAAGACCAGATTTCCCAATCTC TTGTTACATCAATTGAAAACTCAAGGCTTTTAATCCTTGTTTTATCTGAAAATTATGCATATTCTTCATCATGTCTAGAT GAGCTTGTTATGATTATTGACCTCATGAAGAATCAAAACCGACAAATTTGGCCTGTTTTTTATAATGTGGAACCATCAGA TGTAAGACATCAAAGAAATCATTATGGGAAAGCCATGATTCAACATGAAAGTAAATTTGGAATAAACTCTGAAAAGGTAC GGAATTGGAGATCAGCTTTGCTTCAGGTCGCCAACTTAAACACTATGTTTGGTTGTGAAGAGAGAGATAGAGAAGAGAGA GTAGAGAAGAGAGAAGTTGAGTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0032400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKHLIRYDIYLSFSEKDTRYSFTGFLSDALHGEGFNTILKDEGSEKEDQISQSLVTSIENSRLLILVLSENYAYSSSCLD ELVMIIDLMKNQNRQIWPVFYNVEPSDVRHQRNHYGKAMIQHESKFGINSEKVRNWRSALLQVANLNTMFGCEERDREER VEKREVE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.10140
2 165 164 8.8E-48
IPR035897
PANTHER
PTHR32009:SF58
5 149 145 1.0E-55 –
PANTHER
PTHR32009
5 149 145 1.0E-55 –
ProSiteProfiles
PS50104
5 146 142 24.232
IPR000157
SMART
SM00255
6 146 141 9.9E-28
IPR000157
SUPERFAMILY
SSF52200
6 147 142 1.44E-32
IPR035897
Pfam
PF01582
7 142 136 1.7E-29
IPR000157

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0007165
Biological process Signal transduction The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
Subterm of
Part of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0032400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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