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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0032500 |
| Transcript ID | LotjaGi1g1v0032500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT1G27180.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|I3T873|I3T873_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0032500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:4148651..4151118) extracted from Lotus japonicus Gifu genome v1.2.
TGAATAAAGATGCTCTAAGGGTAATTTAAACAAATGTCTCTATGTTTAAAATATGTCAAAGCTATAACAACTTGAATGTC CCAAAACAACTTGTCTTGGAGGTTGATTGACTATAGTCTTATTTAAATATAGCACCCCTATGAATCTTGATCTGCTGCAT ATCTTCATCATGTCGAGTGATACCCTTGACAAAATCTACGATGTTTTTCTCAGCTTTAACGATGACGCCAAGCGCAGCTT CACGGGTAATCTCTATAATGCTTTGCGCCATAAGAAAATCAAGACCTACTTCCTAGATAAAAACGATGATAGTGATGAGG ACTACGACCAGCTTTCACCCTCTGATCTCAAAGCAATTCAAGGATCTAAGATTTCAATTGTTGTTCTGTCTCAATACTAT GCATCCTCATCAAGGTGTACCGATGAACTTGGGATCATCCTTGAATGTATGAGGATGAAGAACCAACTAGTTTGGCCAAT CTTGTACAAAGCAGATATCTCGAATGTAAGGCCTGAAGAAGACGGGGCCGATCAAGTCAGGACTTACTTTAACATGAAAC CAAAATTCAGTTCTGATTCTGATGAGAGGGTGCAGCGACGGAAGCAGGCTTTGTGGGAAGTCAGCAACTTGAACAGAAGG CTTTACCGCGGAACTGATGATGAGTAAGAGCAAATTTCAATTACTTCGACCAAAATGTATTACTATTTATTTTGCTTTCA ACATGGTTCAATATTTAACTATGAGTACATTTCATGTTGCATGGTGATTATTTACCTGGTTCCTTAACCATACATGAAGT AGAAGGTTTGAATGAAACAGTACAATATTTTATGGTTAACTGTTTATCATTTAGTACGGTCACCCACGATCATAGAATTA GTCACCACCCTTTTTGTATTTTGTGTCGTAATTTGTTCTAGTGCATATAGTTAGATTAGTAGGCCACTAGATATTTAGGA ATTTGAATAGTTTGCATTGTACAGTAGGAGATCAGTCAAGCTTATCGAAGAAATGCTTTTGATTAAGATCAATGATGAGG GCTTCTTGTTTTATAGGTGTGAATATGATTTCATCCAAAACATTGTGGAATCAGTCGTCAAATCACTGCCCCACTATGAT ATTTTTATCAGTTTCACCGGGGAAGATACCCGTCACTCTTTTACAGGAGTTCTTTATCATGCTTTGCACCGAGAGGGATT TAAAATATTCATGGATGATGAGGAATTGGAGGGTGGGAATCAAATTTCAAAAACTCTTCTCGAGTCAATTGAAAAATCAA GGCTTTCGATTGTTGTTTTCTCTGAAAACTATGCATATTCTTCATGGTGTCTCGATGAACTTGACAAAATCATTGAATGC ATGAAAACTAACAATCAATTAGTTCTGCCGATATTTTACAAAGTAGAGCCGTTAGATGTAAGCAATCAAACAAATAGCTA TGGGCATGCCATGATTGCGCATGAAAATAGGTTTGGAAAGGAATCTGAGAAAGTGCAAAAATGGAGGTCAACTTTGTCCG AAATTGGCTTCTTGGAAGGAGAGCATGTCAAAGAAAATGAGTAAGTATGATATACTACTTTCAATTACGTATATTAATAT TTATTTTGTTAAAGTTCTGTAATTCTAGTTTTAGGGCACAGTCTTATGATGACAATCTATGTTTACGAAGATTGATTAGT CATGCTTGATTTTATTGTTTTATGAAATAAACTTTTTATGTGATTAATTGCAAGGAAGTGAAAACCGTGGATGAATGAAT AAGCCTTTTTGTATTTCTGCAGGTATGAATTTGAATTCATCAAAAAAATTGTACAAAAGGCCATTGACATTGAACAAAAC ATGTGATACCAGGCACCCATCTCGAATGTCAACTAGAAGGAAGACTTGACTCCATCTTTCAATAAAAGTGTCTTCCAAGC CTTAAATGATGAAGCCTACAAGTGATGGTATTATTACAAGCGATTACCTGCTTCGAAATTCTTAGCAATTGTAATGATTT GATCTTTTATGCGACGGTTCTTAATCGGCCTTCATCACAAGAGAGTATAGAAAACTGTCGCAAAAGCTCCTTATAACTTG ATTGTTGATGAATTTAAATTGATAGTGCATCTTTTCTTACTTTGGCCACGAAAATCTTCAAGAAGCAATTCCATCTAAGA TGTCCAAAGGGAAAAATTGTTCGTTCTTTAATTTGCACAATTCAACTAGAGATTTACACTTTTATCCCAAGCTCCAATAG TAATACAATGAAATTGCACAAATAAGCGAGCTATGAATCATTTACCCATCTATCATTTTTCACTTCATTTACAATTCACT TTCTATCTATCATCATATTACAATTATATCACCAATTACATGGTTTATTCTTTCCCCTTTCTTCTCATCTCTCTTCTCTC CACTCCATTAACGCGCTTAAAAATGAGTGAAAAAAAAAATTCTAAAATAAAATGTACATGTAGTCCTG
CDS sequence (LotjaGi1g1v0032500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCTTGATCTGCTGCATATCTTCATCATGTCGAGTGATACCCTTGACAAAATCTACGATGTTTTTCTCAGCTTTAA CGATGACGCCAAGCGCAGCTTCACGGGTAATCTCTATAATGCTTTGCGCCATAAGAAAATCAAGACCTACTTCCTAGATA AAAACGATGATAGTGATGAGGACTACGACCAGCTTTCACCCTCTGATCTCAAAGCAATTCAAGGATCTAAGATTTCAATT GTTGTTCTGTCTCAATACTATGCATCCTCATCAAGGTGTACCGATGAACTTGGGATCATCCTTGAATGTATGAGGATGAA GAACCAACTAGTTTGGCCAATCTTGTACAAAGCAGATATCTCGAATGTAAGGCCTGAAGAAGACGGGGCCGATCAAGTCA GGACTTACTTTAACATGAAACCAAAATTCAGTTCTGATTCTGATGAGAGGGTGCAGCGACGGAAGCAGGCTTTGTGGGAA GTCAGCAACTTGAACAGAAGGCTTTACCGCGGAACTGATGATGAGTGTGAATATGATTTCATCCAAAACATTGTGGAATC AGTCGTCAAATCACTGCCCCACTATGATATTTTTATCAGTTTCACCGGGGAAGATACCCGTCACTCTTTTACAGGAGTTC TTTATCATGCTTTGCACCGAGAGGGATTTAAAATATTCATGGATGATGAGGAATTGGAGGGTGGGAATCAAATTTCAAAA ACTCTTCTCGAGTCAATTGAAAAATCAAGGCTTTCGATTGTTGTTTTCTCTGAAAACTATGCATATTCTTCATGGTGTCT CGATGAACTTGACAAAATCATTGAATGCATGAAAACTAACAATCAATTAGTTCTGCCGATATTTTACAAAGTAGAGCCGT TAGATGTAAGCAATCAAACAAATAGCTATGGGCATGCCATGATTGCGCATGAAAATAGGTTTGGAAAGGAATCTGAGAAA GTGCAAAAATGGAGGTCAACTTTGTCCGAAATTGGCTTCTTGGAAGGAGAGCATGTCAAAGAAAATGAGTATGAATTTGA ATTCATCAAAAAAATTGTACAAAAGGCCATTGACATTGAACAAAACATGTGA
Protein sequence (LotjaGi1g1v0032500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNLDLLHIFIMSSDTLDKIYDVFLSFNDDAKRSFTGNLYNALRHKKIKTYFLDKNDDSDEDYDQLSPSDLKAIQGSKISI VVLSQYYASSSRCTDELGIILECMRMKNQLVWPILYKADISNVRPEEDGADQVRTYFNMKPKFSSDSDERVQRRKQALWE VSNLNRRLYRGTDDECEYDFIQNIVESVVKSLPHYDIFISFTGEDTRHSFTGVLYHALHREGFKIFMDDEELEGGNQISK TLLESIEKSRLSIVVFSENYAYSSWCLDELDKIIECMKTNNQLVLPIFYKVEPLDVSNQTNSYGHAMIAHENRFGKESEK VQKWRSTLSEIGFLEGEHVKENEYEFEFIKKIVQKAIDIEQNM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 12 | 164 | 153 | 1.83E-20 | ||
| Gene3D | 14 | 193 | 180 | 9.6E-38 | ||
| ProSiteProfiles | 18 | 164 | 147 | 17.116 | ||
| SMART | 19 | 164 | 146 | 2.1E-18 | ||
| PANTHER | 19 | 191 | 173 | 4.2E-109 | – | |
| PANTHER | 19 | 191 | 173 | 4.2E-109 | – | |
| Pfam | 20 | 125 | 106 | 1.8E-18 | ||
| SUPERFAMILY | 191 | 331 | 141 | 5.75E-39 | ||
| ProSiteProfiles | 193 | 334 | 142 | 30.605 | ||
| SMART | 194 | 334 | 141 | 3.8E-39 | ||
| Gene3D | 194 | 362 | 169 | 2.5E-61 | ||
| Pfam | 195 | 355 | 161 | 2.7E-43 | ||
| PANTHER | 195 | 355 | 161 | 4.2E-109 | – | |
| PANTHER | 195 | 355 | 161 | 4.2E-109 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
Expression pattern of LotjaGi1g1v0032500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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