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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0033800 |
| Transcript ID | LotjaGi1g1v0033800.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein 14C; TAIR: AT3G20510.1 Transmembrane proteins 14C; Swiss-Prot: sp|Q9LJU6|FAX6_ARATH Protein FATTY ACID EXPORT 6; TrEMBL-Plants: tr|I3SHL6|I3SHL6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0033800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:4400153..4402139) extracted from Lotus japonicus Gifu genome v1.2.
ATGCACGATTTCTGCTTCACGATTCCTTACGGGTTGCTGTTGGTAGGTGGTGGAGCATTCGGGTACATCCACAAAGGAAG CATCCCTTCTCTGCTCGGAGGTGTTGTCTCTGGTTTGCTCCTCATCGTCGCTGGATACATCAGTCTCAATGCCTTCGGCA AACGGAAGAACTCTTACTTTGCTCTGTTTCTTGAGACCGGTGTGTATACAAGATTTCATGATTTTGCTCTGTTTCGTACA AGGGTGTTTCTAATTAGATTTTTTATTTTTTATTTTTTATGATTTGATCTGGTTTAGATGGTGTTGAAAATGTTGGATTG TGATTCTTTCTGTTTGATCTAGCAAAATTGGTAAAAGGGTCACTGGTTAAGGGTTCAAAATTAGATCTTTCAATGTATTG AATGATGGGGTGGTTATAGTCCATGTTTGCTACATTGGTTTTGTGGTTTGTACTAATTTGTGTCCAAAGATTTTGATTCT CTGTGTTTGATTTTATTTTCTAAGAGGGTCACTGGTTAAGGATTCAAAATTAGATCTTTTAATGCATTGAATGCTCTGGT AGTTATAGACTTATAGTCCATGTTTGCTACACTAGTTTTAGTTTTCTCTTCTTTGTACTAATTTTGTGTCTTTAGATTTT GATTCTCTGTGTTTAATCTAATTTTCTAACAGGGTCACTGGTTAAGGATTCAAAATTAGACCTTTTAATGCATTGAATTA GGGTTGAAAGTATGTTGGATGAATGTAGAAGTGACAATTTGGAGAGTTGAGATGAAAGTTGGTTTGGAGCTAAAAGTGGG TTGGGTGAATGGGGTTTTTAATTTGCCAAACATTGTGGCACAAAGTTACATAAGACCCGAAAGTTCTTTTGGATGCCCCA ACTGAAAAACAAACACACCCATAGTCTATGTTTACTACACTAGTTTTCTCTTCTTTGTACTAATTTTGTGTCCTTAGATT TTGGTTCTCTGTGTTTAATCTAATTTGCTAAGAGGGTCACTGGTTTAGGATTCAAAATTAGATCTTTTAATGCATTGAAT TGAGTGCTCTGGTAGTTTACAGTCCATATTTGCTACACTGATTTTCTCTTTGTACTAATTTGTGTCCTGCAAAACAGTTT GTGCAACCGCTCTAACTTGGGTCATGGGGCAGCGTTACATGGAAACGTCCAAGGTTATGCCTGCTGGTGTTGTTGCAGGA ATCAGGTAAGTCAAGGGTTAGAGATACCCAAAGCTCACATTCTGAACATATATGATTCTTTTCTCAATTCTCACTCAGTT TCTAGGAATTGAGTTTAAATTTTTAAGATTTAGTTATTGGATTGATGTTGTTCTTAGCTTGTGGATTGTAAACCCAAATA TTTCATTTGTTTTGACAAGAAACATTTTAATCTGCTATTATTACCCCCAAACTTTTTATGTGCAAGTTCTTCTAAAATTT GTTTTAACTTCTCAGTTCTCTATATATATTTTTCCAAATAGGATGTCTGGAATCAAGCACTAGTAGGAGCCATTACTTGG TTTATATTTTGTCCAATTGCTCCACATCTGCCACCTTGGACGGAACCAGAAAAATGGGTAACATGGGGCAAAAAAATGCA TTAAGCAACATCTACAGTAGCTAATTGAAACAGACAATATAAAAAGTTTGAGGGGGGCAACTACAACATCTGAAAACTAA TCTATGAAGACAATAATTTATCTTCAGGGAGCTACTACCCCAATTTTTAAGCACTGGGTTCCATCCACTGTTGTACTAAA CAGATTTTTCATGTATGCTAATCTTTGATATACGCATTTGTAGACATTTATGCAAGTTAGGTTGCTTGTTATTTCTAAAC TACCGCTTAATCATTAGAAGAGAAATATATGGTGTTATCTGGAGTTAAGACATTTTCCTTTCTTTTCGGTGCAGTGGTCT CATGACTTTGTTTTATCTCTACAAACTAGCAACTGGTGGCAACCATCTACCTGCCAAGGCTGACTGA
CDS sequence (LotjaGi1g1v0033800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACGATTTCTGCTTCACGATTCCTTACGGGTTGCTGTTGGTAGGTGGTGGAGCATTCGGGTACATCCACAAAGGAAG CATCCCTTCTCTGCTCGGAGGTGTTGTCTCTGGTTTGCTCCTCATCGTCGCTGGATACATCAGTCTCAATGCCTTCGGCA AACGGAAGAACTCTTACTTTGCTCTGTTTCTTGAGACCGTTTGTGCAACCGCTCTAACTTGGGTCATGGGGCAGCGTTAC ATGGAAACGTCCAAGGTTATGCCTGCTGGTGTTGTTGCAGGAATCAGTGGTCTCATGACTTTGTTTTATCTCTACAAACT AGCAACTGGTGGCAACCATCTACCTGCCAAGGCTGACTGA
Protein sequence (LotjaGi1g1v0033800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHDFCFTIPYGLLLVGGGAFGYIHKGSIPSLLGGVVSGLLLIVAGYISLNAFGKRKNSYFALFLETVCATALTWVMGQRY METSKVMPAGVVAGISGLMTLFYLYKLATGGNHLPAKAD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 109 | 109 | 4.7E-29 | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| PANTHER | 1 | 117 | 117 | 1.3E-52 | – | |
| PANTHER | 1 | 117 | 117 | 1.3E-52 | ||
| Phobius | 4 | 15 | 12 | - | – | |
| Pfam | 5 | 103 | 99 | 7.4E-29 | ||
| TMHMM | 5 | 24 | 20 | - | – | |
| Phobius | 16 | 21 | 6 | - | – | |
| Phobius | 22 | 30 | 9 | - | – | |
| TMHMM | 28 | 50 | 23 | - | – | |
| Phobius | 31 | 52 | 22 | - | – | |
| Phobius | 53 | 58 | 6 | - | – | |
| TMHMM | 57 | 76 | 20 | - | – | |
| Phobius | 59 | 80 | 22 | - | – | |
| Phobius | 81 | 85 | 5 | - | – | |
| TMHMM | 86 | 108 | 23 | - | – | |
| Phobius | 86 | 105 | 20 | - | – | |
| Phobius | 106 | 119 | 14 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi1g1v0033800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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