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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0036400 |
| Transcript ID | LotjaGi1g1v0036400.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3SBY9|I3SBY9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0036400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:5086354..5088860) extracted from Lotus japonicus Gifu genome v1.2.
CCATTCACCACCAACACAACAAATTCGTTTTTTCTCTAACAAAGCTTTCACCTTCTGGTGCCAAACTCTTCAAGGTAGGT ACTCACTCTTTCATACAAAGCTTATACTGTAACTTTAAATGTTTAACTGAACAATGCATCAAACTAAGTCTAACCCTTTA ATTTCTCACATTTTTTTGATATAAATATTTGAATGGAAGGAGGAAAAAGTAACCCTTTTTTGTGGTGTTTGCTTGTTTTC ATGTTTCCATTTTGCTGCATGTCATGTTCTTATTTATGATTTTTCCTGATTGCCTCTCAGTTTGGCAATGGAAAGAAAAA GGGGTTCAACTAGCTCTGCTAGTCCTACCAGAAAAGGCAAAAGGGTAGCAGTTGCCAATGAAGTTGATAATGAGCCAGAA AGTCAACAACTTAGGGTTTCTTATGATGATCTTCCATCCCACATCACTGCTGACATTCTGCAAAGACTTCCCTTTAAATC TGTTTGCAAAACTTGGAAAGCTCTGATCATTTGTAAATCTGTTTGCAAAAGTTGGAAAGCTCTGATCACAGGCCCACATT TTGCCAAATTATTGTTTCAGCATGCACCAGCTGGTTTGATGATTTGGGCCAGGGATAGGAAACTGTCAAGAACCTTGTAC CTTCTTGAGTGTGATTCTGAAAAGTTGGGAAATGATGATGAGGGCCAATTCTGTTGCTGTGAGGACTCTTGTATCAAACC TGAATGCAACTGTCACTTTAAACTTGAGCATAAACTCAAGCTTCCTCTTCGTGGTGCCGAACTAGATTTCGACAAAAGAG ATGAGACCGCTCAAAGGGGCGGACGAAGGATTTATAATTCGCTTCCTAATATTCATCGTGCCAAAATAGATGAGTTTGCT GTGGTGAATTCTTGTAATGGCTTGCTTTGCTTGTCTGATCTGGACAGAAACTATTTTGTAGTTTGCAATCCAGTTACAGG TGAGTTCATAAGACTTCCAGAACCTACCAGAATTTATAAATATGATTTTCGCATTGTAAATGTGGGTTTTGGTTTCCAAC CCAGAACTAATGAATATAAGGTGGTAAGAATGTTCAGGGGACACCCCACGTTGCAGGACAATAATAATCTTATTATCGGA GTTGAAATTCACACACTAGGAACATCAACATGGAGGAATGTTGAAGTTGATCATAGGACAGATCCCTTTCTTGAATGTCC TACATGTGTGAGTGGGGCACTTTATTGGATCTGTTATGGTGACGAGACAGAATTGTCCATATTGTGTTTCAACTTTGAAA GCGAGAGTTTCCAATCCTTCCCTTCTCCTGCTGGTTTATGTTTAAATGATGTCACCATGGGAGAATATGGGGGCTCTCTT TACATATGTAACTCATCTTCTACAGGGGGTCACATTGAAATGTGGATTATGAAGAAAAATGGTTTCGAAGAATCATGGAC TCTTGTTATCAGTAGTGATATATTGAGCAGGCCTGATGGTAGTTTAGATTTGCCAGTACTAAAACACCCTAAGAATGATG CTGCTATATTGATCTGTCGTTCTGGCGATCGCTTTGTCTACTATGAACCTGAAAAGAATGGATTCAAAATTTTTAAGGTT CGTGGGACTCAATCAACATTTGAGGCTATTCCTCATATTCCCAGTCTTATCTCATTGAAAGATGTTGTGCAAGGAGACAA TATTGAGGTGATGTATGCCCACTCAAGGTAAGGATGTTGGTTCTATTACTTTGTTCACTAATTGAATCTAAAGCTACCTT AAAAATTATAACTATGATATTATGCCTCCTAAGATAGATGTTCATGGAAACTTGCGTGAGTTTCCCATATTTCTGCTTTT GTTTTAACTTCCTTTTCTGGCATGTTTGGGAGCTTGGGAAGAGAAACTTGTGTCAATCAATTACTTTTACTATATTAAAC TAAATGTGGAACTTTTTATACTTCTTATTTGTAAGTCGTGGATCTTGCAGTTTCTGATAAAAAAAATCCTCGTAGATACA ATCTTGCATTGCTAATTACATCTTTTGAACTTTCAATATGCTTTCCTTACTGATGGAGGAGAATATGTACAGTTGCTGTA ATTTGGAGCTCTTAGATATTCTTTGGTTGTAAAACAGTTGACATATTATCTTAAAGAGTAAAAGCTGATGTTGGAGCCAT ATTCTTTTGACTTGCTGATGCTACCTGTATATTTTGCCACTTTTCTGTAGCACTATTCATTAATATTGGTATCATTTTAT ATAGGCGTGAAGAGTTGAAATTGCAAGAAGAAGAAGATGTTCCTTTCTTGGCTAAAGTGAATGAATTGACAACTTTGTGC TATGAATCCTCTGATGATGATGAAGAATAGGTTGAAGAGTACACCTTCTTACAAGTACTGGCCTTATAACAAGGTTATGC TATATCGCATGTTTTTGTTTTGAATGGTTGTAATATTTGGAATATATTTATCATCTTAGACTACAAAAGATGTTTTTTTA ATTTAATCTATGGTTTCATGGGAATGA
CDS sequence (LotjaGi1g1v0036400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAGAAAAAGGGGTTCAACTAGCTCTGCTAGTCCTACCAGAAAAGGCAAAAGGGTAGCAGTTGCCAATGAAGTTGA TAATGAGCCAGAAAGTCAACAACTTAGGGTTTCTTATGATGATCTTCCATCCCACATCACTGCTGACATTCTGCAAAGAC TTCCCTTTAAATCTGTTTGCAAAACTTGGAAAGCTCTGATCATTTGTAAATCTGTTTGCAAAAGTTGGAAAGCTCTGATC ACAGGCCCACATTTTGCCAAATTATTGTTTCAGCATGCACCAGCTGGTTTGATGATTTGGGCCAGGGATAGGAAACTGTC AAGAACCTTGTACCTTCTTGAGTGTGATTCTGAAAAGTTGGGAAATGATGATGAGGGCCAATTCTGTTGCTGTGAGGACT CTTGTATCAAACCTGAATGCAACTGTCACTTTAAACTTGAGCATAAACTCAAGCTTCCTCTTCGTGGTGCCGAACTAGAT TTCGACAAAAGAGATGAGACCGCTCAAAGGGGCGGACGAAGGATTTATAATTCGCTTCCTAATATTCATCGTGCCAAAAT AGATGAGTTTGCTGTGGTGAATTCTTGTAATGGCTTGCTTTGCTTGTCTGATCTGGACAGAAACTATTTTGTAGTTTGCA ATCCAGTTACAGGTGAGTTCATAAGACTTCCAGAACCTACCAGAATTTATAAATATGATTTTCGCATTGTAAATGTGGGT TTTGGTTTCCAACCCAGAACTAATGAATATAAGGTGGTAAGAATGTTCAGGGGACACCCCACGTTGCAGGACAATAATAA TCTTATTATCGGAGTTGAAATTCACACACTAGGAACATCAACATGGAGGAATGTTGAAGTTGATCATAGGACAGATCCCT TTCTTGAATGTCCTACATGTGTGAGTGGGGCACTTTATTGGATCTGTTATGGTGACGAGACAGAATTGTCCATATTGTGT TTCAACTTTGAAAGCGAGAGTTTCCAATCCTTCCCTTCTCCTGCTGGTTTATGTTTAAATGATGTCACCATGGGAGAATA TGGGGGCTCTCTTTACATATGTAACTCATCTTCTACAGGGGGTCACATTGAAATGTGGATTATGAAGAAAAATGGTTTCG AAGAATCATGGACTCTTGTTATCAGTAGTGATATATTGAGCAGGCCTGATGGTAGTTTAGATTTGCCAGTACTAAAACAC CCTAAGAATGATGCTGCTATATTGATCTGTCGTTCTGGCGATCGCTTTGTCTACTATGAACCTGAAAAGAATGGATTCAA AATTTTTAAGGTTCGTGGGACTCAATCAACATTTGAGGCTATTCCTCATATTCCCAGTCTTATCTCATTGAAAGATGTTG TGCAAGGAGACAATATTGAGGTGATGTATGCCCACTCAAGGCGTGAAGAGTTGAAATTGCAAGAAGAAGAAGATGTTCCT TTCTTGGCTAAAGTGAATGAATTGACAACTTTGTGCTATGAATCCTCTGATGATGATGAAGAATAG
Protein sequence (LotjaGi1g1v0036400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MERKRGSTSSASPTRKGKRVAVANEVDNEPESQQLRVSYDDLPSHITADILQRLPFKSVCKTWKALIICKSVCKSWKALI TGPHFAKLLFQHAPAGLMIWARDRKLSRTLYLLECDSEKLGNDDEGQFCCCEDSCIKPECNCHFKLEHKLKLPLRGAELD FDKRDETAQRGGRRIYNSLPNIHRAKIDEFAVVNSCNGLLCLSDLDRNYFVVCNPVTGEFIRLPEPTRIYKYDFRIVNVG FGFQPRTNEYKVVRMFRGHPTLQDNNNLIIGVEIHTLGTSTWRNVEVDHRTDPFLECPTCVSGALYWICYGDETELSILC FNFESESFQSFPSPAGLCLNDVTMGEYGGSLYICNSSSTGGHIEMWIMKKNGFEESWTLVISSDILSRPDGSLDLPVLKH PKNDAAILICRSGDRFVYYEPEKNGFKIFKVRGTQSTFEAIPHIPSLISLKDVVQGDNIEVMYAHSRREELKLQEEEDVP FLAKVNELTTLCYESSDDDEE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 32 | 32 | - | – | |
| Pfam | 40 | 85 | 46 | 2.5E-7 | ||
| SUPERFAMILY | 40 | 105 | 66 | 9.81E-10 | ||
| PANTHER | 41 | 423 | 383 | 1.1E-37 | – | |
| TIGRFAM | 194 | 423 | 230 | 1.3E-34 | ||
| Pfam | 299 | 378 | 80 | 5.6E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0036400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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