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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0036500 |
| Transcript ID | LotjaGi1g1v0036500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3SBY9|I3SBY9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0036500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:5096816..5101100) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAAAATTATTTAGAAGGCCTAAACCAAAGAACCCTGAATTTAGAGGGATAAAAAACATATTTAAGCCTCCCTTTGA AAATGAAAATGAAAATGAAAATGAAAATGAAAAATGGGAAACCAAACAAATGTGAATTTTACAGTTGGAATAGAGAAAAG TTTTCTCCTTTAAAACGTGTTTCATAGATGAAAGAATGCCCTTTTGTTCTTCTCATTTGTATGTATCGATGATCACGATA CAACCATTCACCAACAAACCAACACATTCGCATTCGCATTTTCTCTGACAAAGCTTTCACCTTGCGGCGTTGATCTATTT GAAGGTACTTTGCAATTCTCAATCCCTCATTTCTTTAATCTAGTTTCAGTTTTCAGTGTTTATCTTTCACCATCTTATAA TTTTTGAGTTGTCATTTTCTATACCAAGTTTATACTGTAATTTTCAATGTTTAGTTGAAGAATGCATCAAACCAACCCTT TAATTTCTCTCTATTTTGATGTTTCCAATTTGCATGTCATGTTCTTATTTGTGCTTTTCCTGATTGCCTCTCATCAGTTT GGCAATGGAAAGAAAAAGGGGTTCAACTGGCTCTGCTAGTGCTATTAGAAAAGGCAAAAGGGTAGCAGTAGCTGAGAAAG TTTATGATAGCTCTGCTAGGGCTACCAGAAGAAGCAAGAGAATAGCTGAGAAACTTAATAAGCATGAAAGTCAACAACTT AGGGTTTCTTTTGATGATCTTCCATCCCACATCACTGCCCACATTCTGCGAAGACTTCCCGTTAAGTCTGTTATCATTTG TAAATCTGTTTGCAGAAGATGGAAAGCTGTGATCTCAGACCCACATTTTGCCAAATTACACTTACAGCTTTCACCGGCTG GTTTAATGATTTTCACCAGGGATAGGAAACTGTCAAGAACCATGTACCTTCTCGAGTGTGATTCTGAAAAGTTTGGAAAT GATGATGAGGGCCAATTCGGGTTCCGTGAGCGTAAACGCAACTGTCACTTTAAACTTGAGCATAAACTCAAGCTTCGTCG TCGTGGTGGCAAACTAGATTTGGACAAAAGAGATGAGACCAAACAAAGGGGCAGACAAATGGGTTATATTCCTTGCGAGC TTCCTCTTCATGGTGCCAAATTTAATAATTATGCTGTGGTGAATTCTTGTAATGGCTTGCTTTGCTTGTCTGATATGGAA AGAAACTATCTTGTTGTTTGCAATCCAGTTATAGGTGAGTTCATTAGACTTCCGGAACCTACCATAATTGATAAAGCTGA TTATAAGTTGCGTAGGGTAGATGTGGGTTTTGGTTTCCAACCCAAAACTAATGAATACAAGGTGGTAAGAATATTCAAGG GACGCTGCCCGTTGCAGGACACAAAGGTTATTATGGGAGTTGAAATTCACACACTGGGAACATCAAAATGGAGGAATGTT GAGTTTGATCCTACGCATGTTTACTGGCTTCAATTTCCTACATGTTTGAGTGGGGCACTTTACTGGATCTGTTATCATCA CCAGGAATTGTCAATATTGTGTTTCGAATTTGAAAGTGAGAATTTCCAATTGTTGCCTACTCCACCTCATTTATTTATAA ATGATATGACCGTGGGAGAATATGGGGGCTCCCTTTACATATGTAATTCATCTCTTACAGGGGGTCACGTTAAAATGTGG ATTATGAAGAAAAATGATTTCGAAGAATCATGGACTCTTGTTTTCAGCAGTGATATTATGAGCAGGCCTAATGGTAGTTT ATATTGGCCAGTAAAACACTTTCAGAATGGTGCTGCTTTATTGATGTATCATTCTTGCAATTGCTTTATCTACTATGAAC CTGAAAAGTATGGATTCAGATTTTTTAAGGTTCGTGGATCAAAATTTGAGGCTGTTCCTCATGTTCCTAGTCTTATCTCA CTAAAGGGTGCTGTGAAAGGAGATAATATTGAGGTGATGAATGTCCACTCAAGGTAAGGATGTAGGTTCTATTACTTTGT TCACTAATTGAATCTAATGCTACCTTAAAAATTATAACTACTAGGATATTATGCATCATAAGATAGATATTCATGGGAAC ATGTGTGAGTTTCCCGTGTTGCTGCTTTTGTTTTAGCTTCCTTTTCTGGCATTCTGTTTGGGAGGTTGGGAAGACAAACT TGTAACTATGTCAATCAATTACTTTTACTATTATATTATTTCTAGAACTTTTTATACACCTTATATTTTAGTTTTTCTTT ATCATCTACAATATTTGTAATTCTTGGATCTTGCAGTTTCTTAAAAAAATTCCTTGTAGATACAATCTTGCATTGCTAAT TACATCTTTTGAACTTTCAATATACCTTCCTTACTGATGGAGGAGATTGAATATGTACAGTTGCTGTAATTTTGAGCTCT TAGATATTCTTTGTCGTAAAGCAATAGACATACTATGTGAAAGAGTGAAAGCAGATGTTGGAGACCATCTTGACTTGCTG CTACCTTCAGATTTAGCCACTTTCCTGTAGTACTATTCATTAATATTGGTATCATTTTATATAGGTGTGAAGAGGTGAAA TTGCAAGAAGAAAAAGAAGTTCCTTTCTTGGCTATAGTGAAAGAATTGACAAATTTGTGCTATATATCTTCTGATGATGA AGAATAGGTTGAAGAGTACACTCCTAACAAGTAATTGGCTTATAAAAAGGTTATGCTATATCGTAAGTATTGGTTATGAC TGGTTGTAATTTTTGGAATATTTGTACTATTTTAGACTACAAAAGATATTTGTTTAATCTATGGTTTCATGGTTCCTCAG CCTTTTGATTCTGTTATATGCTCTTTACATGCTTTACTATGTTTGTGATATCTACAATGATTTCCTTATCAGTGTGGAAT TTGATAAAATTTAAGCAGAATATCACAAACTCTAGCATCTGTTTTCGCATTAACTACGGACAAATATGAGCATCCATCTA AGATTAAAAAGAATTGAACCGTTTACTAGTCTTGTTCTTAAGTTATATATTTTTTTTGCATTTAGACACATTTTCTCGAT GAGTTTGGTTCATATGAGAGCAGCCATAAGGGCTATTGATAGGGACTCACATATTAATAGGTCCTCTTGGTTAGTAATTG TCGTAGTTAGAGGTTGGTTTCCTATAAATAAGATGAAGTTAGAGTCAGTTGGGGATCTTTTGTATTCAGATTGGTTCTGG GTTCTCTTGGTTAGTAATTGTCTTAGTTAGAGTGGTCTCTTTCTGGGTTTGAAGGGTGTTTGGTATCCTTCTCTCTTGTA TCTTCCCTTAGTTCTCAATTTGGGAATTAGGGAAACCATGATGATGAGTCAATTGTCACCGCCACAATTGCAAGGGAAGA AGAGGTGGATTATGCTATATGTATTCAAGTCACGGCTATGCACAGTGACTTAGTAATGACAGTGACTGGAATGATGGATA TGCACCAGCAATCTGACAATATTAGGTTGCTCCTTTGCCACCTTTGTCACACCAGAAGACCTTTGCTGATTTGATTCATT AAATCACTATATTCAGGTTGGAGGGGGGACTTTTGCTTTCACCAATTACTCGAGAGGCTGTGGCAAGCATTGAGTATCAA GGTGATTTTGGGCATTTTAGCTTGGAGGGGCTTGCATTTGAAGTTGGCAGTGGGAAAGAAACTGGATTGAGGAAAATTAG CTTGGGGGACCTTGCAGTTGAAGATTCTACTAGCTTGATACATCAAAGGTTAAGGGACCATGGCAGAATTTATACTAGTT GTTCAGAGGATTGGTTCAACACTTTATACTAGTTGTTCAGAGATATTAGTGCTGATTCTAATACTGTAATTCTTGAGGAC TTATTGGCTGGTGATGGGAAAATGTCTACCAATTCATTCATGTCTGGATTTGCTTTTGAAGATGCTGTTCCAGTGCTATT CCACCCTGTTTGCATCAACTGGATCTTCTGCAAATTGTTTTAGACTCTTTGCTTTAGTTTGTGGGATCCAGCTGGAAGTT GTGCTTGTCACATTTGGATTGTTGGGATATCTGTTCCATGTTGTAGCTTTTATTTTGTCCTTCACCTTGAGGACAAGGTG AATTTTCAGGAAGGGAGTATTGATAGGTGCTCACTACTCACATATTAATAGGTACTCTTGGTTAGTAATTGTCTTAGTTA GTTCGAGGGTTAGTTAGTTAGAGGTTGGTTTCCTATAAATAAGAGGAAGTTAGAGTCAGTTGGGGATCTTTGTATTCAGA TTGGTTTTGGGTTCTAGAGAGAGTGGTCTCTTTCTGAGTTTGAAG
CDS sequence (LotjaGi1g1v0036500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAGAAAAAGGGGTTCAACTGGCTCTGCTAGTGCTATTAGAAAAGGCAAAAGGGTAGCAGTAGCTGAGAAAGTTTA TGATAGCTCTGCTAGGGCTACCAGAAGAAGCAAGAGAATAGCTGAGAAACTTAATAAGCATGAAAGTCAACAACTTAGGG TTTCTTTTGATGATCTTCCATCCCACATCACTGCCCACATTCTGCGAAGACTTCCCGTTAAGTCTGTTATCATTTGTAAA TCTGTTTGCAGAAGATGGAAAGCTGTGATCTCAGACCCACATTTTGCCAAATTACACTTACAGCTTTCACCGGCTGGTTT AATGATTTTCACCAGGGATAGGAAACTGTCAAGAACCATGTACCTTCTCGAGTGTGATTCTGAAAAGTTTGGAAATGATG ATGAGGGCCAATTCGGGTTCCGTGAGCGTAAACGCAACTGTCACTTTAAACTTGAGCATAAACTCAAGCTTCGTCGTCGT GGTGGCAAACTAGATTTGGACAAAAGAGATGAGACCAAACAAAGGGGCAGACAAATGGGTTATATTCCTTGCGAGCTTCC TCTTCATGGTGCCAAATTTAATAATTATGCTGTGGTGAATTCTTGTAATGGCTTGCTTTGCTTGTCTGATATGGAAAGAA ACTATCTTGTTGTTTGCAATCCAGTTATAGGTGAGTTCATTAGACTTCCGGAACCTACCATAATTGATAAAGCTGATTAT AAGTTGCGTAGGGTAGATGTGGGTTTTGGTTTCCAACCCAAAACTAATGAATACAAGGTGGTAAGAATATTCAAGGGACG CTGCCCGTTGCAGGACACAAAGGTTATTATGGGAGTTGAAATTCACACACTGGGAACATCAAAATGGAGGAATGTTGAGT TTGATCCTACGCATGTTTACTGGCTTCAATTTCCTACATGTTTGAGTGGGGCACTTTACTGGATCTGTTATCATCACCAG GAATTGTCAATATTGTGTTTCGAATTTGAAAGTGAGAATTTCCAATTGTTGCCTACTCCACCTCATTTATTTATAAATGA TATGACCGTGGGAGAATATGGGGGCTCCCTTTACATATGTAATTCATCTCTTACAGGGGGTCACGTTAAAATGTGGATTA TGAAGAAAAATGATTTCGAAGAATCATGGACTCTTGTTTTCAGCAGTGATATTATGAGCAGGCCTAATGGTAGTTTATAT TGGCCAGTAAAACACTTTCAGAATGGTGCTGCTTTATTGATGTATCATTCTTGCAATTGCTTTATCTACTATGAACCTGA AAAGTATGGATTCAGATTTTTTAAGGTTCGTGGATCAAAATTTGAGGCTGTTCCTCATGTTCCTAGTCTTATCTCACTAA AGGGTGCTGTGAAAGGAGATAATATTGAGGTGATGAATGTCCACTCAAGGTGTGAAGAGGTGAAATTGCAAGAAGAAAAA GAAGTTCCTTTCTTGGCTATAGTGAAAGAATTGACAAATTTGTGCTATATATCTTCTGATGATGAAGAATAG
Protein sequence (LotjaGi1g1v0036500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MERKRGSTGSASAIRKGKRVAVAEKVYDSSARATRRSKRIAEKLNKHESQQLRVSFDDLPSHITAHILRRLPVKSVIICK SVCRRWKAVISDPHFAKLHLQLSPAGLMIFTRDRKLSRTMYLLECDSEKFGNDDEGQFGFRERKRNCHFKLEHKLKLRRR GGKLDLDKRDETKQRGRQMGYIPCELPLHGAKFNNYAVVNSCNGLLCLSDMERNYLVVCNPVIGEFIRLPEPTIIDKADY KLRRVDVGFGFQPKTNEYKVVRIFKGRCPLQDTKVIMGVEIHTLGTSKWRNVEFDPTHVYWLQFPTCLSGALYWICYHHQ ELSILCFEFESENFQLLPTPPHLFINDMTVGEYGGSLYICNSSLTGGHVKMWIMKKNDFEESWTLVFSSDIMSRPNGSLY WPVKHFQNGAALLMYHSCNCFIYYEPEKYGFRFFKVRGSKFEAVPHVPSLISLKGAVKGDNIEVMNVHSRCEEVKLQEEK EVPFLAIVKELTNLCYISSDDEE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 39 | 158 | 120 | 8.6E-10 | – | |
| ProSiteProfiles | 53 | 98 | 46 | 11.644 | ||
| PANTHER | 55 | 390 | 336 | 1.2E-37 | – | |
| Pfam | 55 | 95 | 41 | 1.8E-9 | ||
| PANTHER | 55 | 390 | 336 | 1.2E-37 | – | |
| SUPERFAMILY | 56 | 223 | 168 | 1.44E-15 | ||
| SMART | 59 | 98 | 40 | 1.2E-6 | ||
| TIGRFAM | 200 | 426 | 227 | 1.6E-31 | ||
| SUPERFAMILY | 302 | 401 | 100 | 9.81E-5 | – | |
| Pfam | 306 | 384 | 79 | 1.2E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0036500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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