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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0036800 |
| Transcript ID | LotjaGi1g1v0036800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3SBY9|I3SBY9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0036800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:5115729..5119954) extracted from Lotus japonicus Gifu genome v1.2.
CTGGAACTTATTTTTTCGGAGTAAAACACGGAATGCATTTAAGAATTTTCTTAATTTAAAGTGGGTGACAATTTTAATTG ATGAGCATGTATATACTCAAGCTCACAATGCAACCATTCACCACCAACACAACACATTCGACTTTCCTCTGACAAAGCTT TCACCTTCCGGCGTCGAACTCTTCAAGGTACATACTTTTGCAATTCATAGTCCCTTATCTTATAATTAGAGTAGAAATTT TCCATTGAAGAATGCATCAAACTAACCCTTTAAGCTCTCAAATTTTATGGTAGAAAAAGAAACCCTTTTTGTGGTTTTTG CTTGCTCCCAAGTCTCTATTTTTATGTTTCATTTTGCATGTCATATTCTTATTTTTGCTTTTCCTGATTGCACTTCAGTG TGGCCATGAAAAGAAGAAGAAAGGGCTCAATTGGCTCTTCTAGGGCTACCACAAGAAGGGGCAAAAGGGTAGCAGTAGCA GAGAAAGTTGATGATGATGAGCCAGAAAGTCAACAACTTGGGGTTTCTTTTGCTGATCTTCCAACCCACGTCATTGGTCA TATTCTGCTAAGACTTCCCATTAAGTCTATTGGCATTTGTAAATGTGTTTGCACAAGTTGGAAAGCTCTAATCTCAGACC CACATTTTACAAAATTGCACCTTCAGCAAGCCCCAGCTGGTTTTACGATTCGGGCCAACGATCGGTCTCGAGTTTCGAGA ATCCTGCACCTTTTAGAGTATGAGCCTGAAGATTTTGAAAATGTTGAGGATGGCCAATTTTGCCGTTGTTACTCCTTGAT CAAACCTGAATGCAACAGCCACTTGAAGCTTGAGCAAAAACTCAAGCTTCCTCTTCGCAGTGGTGCCAAATTAGATTTGG ATGAGGCCGAGAAAAGGGGTAGAAAAGGGCATTATATTCCTAGCAAGCCAGAAGACGATAGGTTTTTTGTGGTGAATTCT AGTAATGGCTTGCTTTGCTTGTCTGATCATTTAGGAGAAAATTTCGTTGTTTCCAATCCAGTCACAGGTGAGTTCATAAG ACTTCCAGAAGCTACTAGAATTGATGCAACTGATTATATCCAGCACCGAAGATCATATGTGGGTTTTGGTTTCGAACCCA AAACTGATGAATATAAGGTGGTAAGAATATTCCATTTAGGTTGGGGGGCGAAGGAGGTTAAGTCTATTGAAATTTACACA TTAGGAACATCTACATGGAGGAATGTTGGAGGAGTCAATGCTGCAGATTTCGTTTGGCTTGAATTTCCTACTTCTGTGAG TGGGGTACTTCATTGGATTGGTTATTATCAAACAAAATTGTCAATATTGTGTTTCGACTTTGAAAGCGAGAGTTTCCAGT CCTTCCCTTCTCCTCCTCATTTATTTAAATATTCTGATAAAAAGAATATCACTATGGGAGAATTGAAAGGATCTCTTTAC ATATGTGATTCATCCTCAAAGGATAATTATGTTAGAATGTGGATTATGAAGAAATATGGTTTCGGAGATTCATGGACTAA TGTTTTCAGCATCGATACTATGAGCATAGATGGATGGCCTTATGGTGGTCTGTATTGGCCAGTAAAACACTTAGAGAATG GTGCTGCTGTATTGATGTATCATTCCAGTAACTGCTTTATCTACTATGAACCTGAAAATAGTGGATTGAAAGTTTTTAAG GTTCGTGGGACTTATTCAGCATTTGAGGCTATTCATCATATTCATTATTCAGCATTTGGGCCTATTCATCATATTCCCAG TCTTATCTCATTGAAGGATGCTGTGAAAGGAGACAATATTGAGGTGATGAATGTCCACTCACGGTAAGGATGTTGGTTCT ATTACTTGGTTCTCTAATTGAATCTAATGCTACCTTAAAAATTATAACTACTATGATATTACATTATATGATAGATATTA GATATTCATGGGAACATATGTGAGTTTCCCATGTTGCTGCTTTTGTTTTAACTCCTTATCTAGCGTTCTGTGTCAGAGGT TGAGAAGAGAAACATGTTTCTGTGTCAATCAAATACTTTTACTACTAAACTATATGTGAACTTTTTATACATCTTATGAT TTCAGTTTTTCTTTATTATCCTGGCTTGGCTCTTGCAGTTTTTGAAAAAAGTTCCTTGCCGTACAAACTTGCATTGCCAA TTATTTGTGAAGTTGCTGTAATTTTGAGCTCTTATAAATTCTTTTGTTGTAAAGCAGTATACATATTATGTGAAAGGGTA AAAGCAGATGTTGGAGACTATTTTGACCTTCTGCTACCTCCAGTTGCTAAAGCACTATTAACTAATATTGGTATTATTCT ATATAGGTGTGGGAAGTTTAAATTGCGTGAAGAAAATGAAGTTCTTTTCTTGGCTAATGTGAATGCTGTAGTGGTAAATT CTAACTTTATATCGTTGGATGATGAAGAATAGGTTGAAGAGTACAGCTCCTAACAAGTAATTGGCGAGTAAAAGGTCATG CTACATCGTAAGTTTTGTTTTCGACTGGTTGTAATTTTTGGAAAATATATCATCTTAGACTACATAAGATATTTCATTAC TCTAAGGTTTCACAGGAATGATCATTGCTCATCCTTTTCATTCTGTTTTCTATGTCCTTTACATGATTTACTATGTCTGC CATATCTCCATTCATTCCCTTTCGCATCCTTTCCTTGAAAAGGGGTTCTAAGTTGTATGTAATGTAATGAATCTTCTCTT GAGTGTGGAATTTGATAAAAATTTAAGCAGAAATTTACAACCTCTAGTATCTGTTTTTACATTAATCATTCACAATTTGG AGCATCCTGTTGGGCCAAACACATCCATCTAAGAAGAAAATGATTGAATTGAACCCTTGACCAGTATAAAGAAACAGGTC ATATGTTGCAGACTTGCAGTCATGGTACTAGGAAAAGAAACAGGACATTTGTCGAAGGCAATAACCTGTATGTTCCAAGT AATAGTTATGCTGCCTACATTCTAAAATCAGTTCACTGAATTTGCAAGTAGCTTGTATGGTGACCATGGAAAATATGGAT GATACTCATATTCTACCTTGGGAAAATTTGAGGTCCAAGGCTCCATGATTTATAGATATCTCCCCTACCTTGGGAAAATT CAAGTAATGAAGTTAAGATATTTCAATATAGAAATTTTTCGCTATGGGTTGCTTAAACACCATAGTTGTGGAATAGGGCT TTTGTTTCAATGTAACAAGTGGGTTGTAATAGTGCATCTACTGTAGGAAGACATGCCCAAGTAGATTGTATTTATGCAGA AAGGAATGGAGAAAGCTTTAAGGCCTAACTTTGGGTTTTATTGCAGGTTTTAAGCTAAAACCTAAGGAACTCGGATCCTC TCCAGCAGTTACTCTCTCCAGCCTTCCTCCTGCAATATCCTGACCATTTATCTTGTATTTAAGGGCTGTGATTGGTTGTA ATAAAAAAGCTAATTCTTGAGTTAAAAAAGAAAACATGTGATTACCACTGCTGCACCGCTGGAGAAGCAGGAGATGATCT GGATTCTACTTCAACTTAGGTTTGAATCAAGATCATCTCCTGCTTCTCTCCAGCGGTGCAGCAGTGGTAATCACATGTTT TCTTTTTTAACTCAAGAATTAGCTTTTTATTACAACCAATCACAGCCCTTAAATACAAGATAAATGGTCAGGATATTGCA GGAGGAAGGCTGGAGAGAGTAACTGCTGGAGAGGAGTTCAGTTGGAGTATCTTGAGCATCATTCTTCGACCAAGTGCTCA TCTTTGATTAAAGTCTTCGACCCTTATTATGATTCGATTCAACTTTGACTGAAGTATGATGGTTATGGTTGAGATTTGCA AGTAATTTAGTTAAACTGAATTTAGTTATTTTTCATTGAAAATGGATCAAAGATTCAAGTTTCAAATTCACTTTTGGAGC AGGAATGGAAAAGAACTGTCCAGCCACATCGAAGAAAAAACCATGTCAATGGACGCGTTGAAGATTTTTAGCATATTATT AACTAGCCGTTAGGAAGGTAGTTAGAACTTAGCCTATAAATAAAACTTGTGTACTTGAAATTGGAATTCACAATTTTCTG CTCAAAATTTCTATGGAAAAGTTTATACATCTGCTCAAGTGACTGTTAGCAATGAGGAGAACTTCAAGTATGATTTCATG TGAAACTCTATTTTAATGTAATTGATGTTTTTTAGGCAATTCCTTTCAATGTTTCTTTCTTTTTCC
CDS sequence (LotjaGi1g1v0036800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAAGAAGAAGAAAGGGCTCAATTGGCTCTTCTAGGGCTACCACAAGAAGGGGCAAAAGGGTAGCAGTAGCAGAGAA AGTTGATGATGATGAGCCAGAAAGTCAACAACTTGGGGTTTCTTTTGCTGATCTTCCAACCCACGTCATTGGTCATATTC TGCTAAGACTTCCCATTAAGTCTATTGGCATTTGTAAATGTGTTTGCACAAGTTGGAAAGCTCTAATCTCAGACCCACAT TTTACAAAATTGCACCTTCAGCAAGCCCCAGCTGGTTTTACGATTCGGGCCAACGATCGGTCTCGAGTTTCGAGAATCCT GCACCTTTTAGAGTATGAGCCTGAAGATTTTGAAAATGTTGAGGATGGCCAATTTTGCCGTTGTTACTCCTTGATCAAAC CTGAATGCAACAGCCACTTGAAGCTTGAGCAAAAACTCAAGCTTCCTCTTCGCAGTGGTGCCAAATTAGATTTGGATGAG GCCGAGAAAAGGGGTAGAAAAGGGCATTATATTCCTAGCAAGCCAGAAGACGATAGGTTTTTTGTGGTGAATTCTAGTAA TGGCTTGCTTTGCTTGTCTGATCATTTAGGAGAAAATTTCGTTGTTTCCAATCCAGTCACAGGTGAGTTCATAAGACTTC CAGAAGCTACTAGAATTGATGCAACTGATTATATCCAGCACCGAAGATCATATGTGGGTTTTGGTTTCGAACCCAAAACT GATGAATATAAGGTGGTAAGAATATTCCATTTAGGTTGGGGGGCGAAGGAGGTTAAGTCTATTGAAATTTACACATTAGG AACATCTACATGGAGGAATGTTGGAGGAGTCAATGCTGCAGATTTCGTTTGGCTTGAATTTCCTACTTCTGTGAGTGGGG TACTTCATTGGATTGGTTATTATCAAACAAAATTGTCAATATTGTGTTTCGACTTTGAAAGCGAGAGTTTCCAGTCCTTC CCTTCTCCTCCTCATTTATTTAAATATTCTGATAAAAAGAATATCACTATGGGAGAATTGAAAGGATCTCTTTACATATG TGATTCATCCTCAAAGGATAATTATGTTAGAATGTGGATTATGAAGAAATATGGTTTCGGAGATTCATGGACTAATGTTT TCAGCATCGATACTATGAGCATAGATGGATGGCCTTATGGTGGTCTGTATTGGCCAGTAAAACACTTAGAGAATGGTGCT GCTGTATTGATGTATCATTCCAGTAACTGCTTTATCTACTATGAACCTGAAAATAGTGGATTGAAAGTTTTTAAGGTTCG TGGGACTTATTCAGCATTTGAGGCTATTCATCATATTCATTATTCAGCATTTGGGCCTATTCATCATATTCCCAGTCTTA TCTCATTGAAGGATGCTGTGAAAGGAGACAATATTGAGGTGATGAATGTCCACTCACGGTGTGGGAAGTTTAAATTGCGT GAAGAAAATGAAGTTCTTTTCTTGGCTAATGTGAATGCTGTAGTGGTAAATTCTAACTTTATATCGTTGGATGATGAAGA ATAG
Protein sequence (LotjaGi1g1v0036800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRRRKGSIGSSRATTRRGKRVAVAEKVDDDEPESQQLGVSFADLPTHVIGHILLRLPIKSIGICKCVCTSWKALISDPH FTKLHLQQAPAGFTIRANDRSRVSRILHLLEYEPEDFENVEDGQFCRCYSLIKPECNSHLKLEQKLKLPLRSGAKLDLDE AEKRGRKGHYIPSKPEDDRFFVVNSSNGLLCLSDHLGENFVVSNPVTGEFIRLPEATRIDATDYIQHRRSYVGFGFEPKT DEYKVVRIFHLGWGAKEVKSIEIYTLGTSTWRNVGGVNAADFVWLEFPTSVSGVLHWIGYYQTKLSILCFDFESESFQSF PSPPHLFKYSDKKNITMGELKGSLYICDSSSKDNYVRMWIMKKYGFGDSWTNVFSIDTMSIDGWPYGGLYWPVKHLENGA AVLMYHSSNCFIYYEPENSGLKVFKVRGTYSAFEAIHHIHYSAFGPIHHIPSLISLKDAVKGDNIEVMNVHSRCGKFKLR EENEVLFLANVNAVVVNSNFISLDDEE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 32 | 32 | - | – | |
| Gene3D | 32 | 142 | 111 | 2.4E-8 | – | |
| ProSiteProfiles | 39 | 84 | 46 | 9.339 | ||
| Pfam | 41 | 83 | 43 | 1.4E-9 | ||
| SUPERFAMILY | 42 | 98 | 57 | 1.31E-14 | ||
| PANTHER | 44 | 379 | 336 | 6.2E-41 | – | |
| PANTHER | 44 | 379 | 336 | 6.2E-41 | – | |
| SMART | 45 | 85 | 41 | 4.9E-8 | ||
| TIGRFAM | 186 | 417 | 232 | 8.0E-31 | ||
| Pfam | 291 | 365 | 75 | 7.1E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0036800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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