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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0038200 |
| Transcript ID | LotjaGi1g1v0038200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT1G27170.1 transmembrane receptors / ATP binding protein; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7K8H1|G7K8H1_MEDTR TIR-like domain protein TSDC protein; Found in the gene: LotjaGi1g1v0038200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:5319954..5326481) extracted from Lotus japonicus Gifu genome v1.2.
AGAAAGTCCAGCTAAAGACTTTCTGTGAGATGGAAGTTTGGTTTATATAATTAAGCTAGCATCGATCAAGGCTTAACCAA AATCAATCACTCTGAACTGATCTTTGACTTTCTAGCTAGTTAACTGGTTCTGGTCATTTCCAAAAAGAGTAGAAAGAAAG ATCTCTATCTTCATTTGCTTGCTGCCTGCAACATCTTGGAGTGAGTTAAACAAACTTTCATATTCACCTCACCTCCCTAA TTCTATTTCTCTTTTTATCTCTATCGTTTTATTGACGCTGGTTGGTTCTGTGTACTATGCTATTCCAACATTTTCTATCA TTATACATACTTAGCTCTATCTTAATTTATGTCAACAGTTTGGTTTAAGCATCAAGACTTAAGCAAATTCCAAAAGGAGT AGAAAGAAAGATCTCTGCTTATCTAAAAAAAAAAAAAAAGAAAGAAAGATCTCCATCTTGATTTGGTGCCAGCTGCCTGC AACATTGATCTTGGAGTGAGTTCAACTTCCATTCACCTGGCCTCCTTAATTAACTCTAGCTATATCTTTTTTCATATCAA ACATTTCCCTTTTATTACTATTACTGGTTCTGTTTACTATGGCATTCCAGCAAATTTTTATATATTTCACATCAAAGATC ATGCTTAATTTATTCTTTTCCTGCCTGCAATAACATGAATCTAAAATGGTCTCTCACTTAAGCCCCTAAATCTAAAATGG TCTTCAGATATATTTTTGATAGCTTTTAGTCCTTAAATAAACATTTTTTGTTTTAAAAATGTTCATGTGACGTCATAATG TTTATTTGACAATTTTATTTACTCGATCATCTGCCCATATTACAATTCTAATCATATGTAGGTTGTTTATATGGATTTTT CAATCAGCTTTAATTCTTCAAAATTCTTTTTTTATCAACTTTGGTCCTTCTCTTCCTCCTCCCTCCTCAAGCCACCACCT AAGCTCCACACCCACCACCCAGCCACCGCACAACCTCCACATCCTTCCCTCACCTCAACAAATTAATTCATACACTTCTA CACTACTCGTACGTAAATGCTTATCTGCATATATAATTGATTTTAACTTTAGAAGATTTCTAAACATACACATATTTGTC TATGATTAATTCGTGAAGTAATCACATATTTAAAATAAAGACAATTACTGAAATATGTTTTGGATATATTTTGAATTGTT TGGGTATGCTTTAGGGAAAGGCAACGGAATTTAAGAGGCTCTTTGGTTTACTAGTATTTCCAATTTTTCACTTTTTCAAT AAAAATATAAAATAAAGCTCAAACATGTTTGGTTCATTAGCATGAAATTGGCTGACTTGATGACTTTTCACTGACGAAAA ATTCTGAGGACAATTCCTATTGGTTCAGTTAGAAGATAGAAGAAACAAAGTCGTTCATTGACGTCCTATCTCAAGATTTG GGTCTTCATTATGGAGTCGAAGCCACATCTAGACGATGTACGATATGCAAAGTTTTGGAGCCTGCAACTTGATGATGATG TAAGTTAAACTTTCATTAACCTTTTTAATTCTACATCCTTTTTTTTATATCAAACATTTTCCTTTTATTGGCACTAGCTA TATATTATACTGATTATGCGAACTATGTTATTCCAGCAAAATTTTATGTATTTCACATCATTTCCTTCCGTATCGAATTA CTAATGTTAGATCTAGCTTTCCAAAAACAACATAGGTATATATTTTTCATATTTTTTGAACATGCACTTAAATATAAGCG AAGGCATGCATATATATAATTGTATCCGATTATAATTATGGTTTGGTGAAAAAAAAATGAATTATTTTCCTTTGCTGGCC AACTAGTTTCAAAATGGTACATCAAATTTGACGATGGAGCAGGAATCCAAGACTTGTTTTTATCTACAAGTCGTACGTGA ATATGTGGAGCTGAGTTTCAAGTCAAAGGAAGACTGTACAATTGATAAAGATTCAATTTGGTCACATCCAAATGAAAAAT TTGATGAAGTTTTGGAGTGGATAAAAGAAGTGGATAAATTCATGGGTAAGGCCACAAAGGAAATGTGCGAAATAAGTCTT GAGACTGATTCGTATTGGTGCAAGAAGATAATATCAAGAATAAGAGATCTACGTGCCAAACGTGGCCCCAATTTTACTTT CCAAATAGTAAGCTCATCTGAGGTGATAACACCACTTTCCTCACGTGAAAAGCTCTTCTGTGAACTAATGTTGCTGGGTC ACATACGTTTAGCTGTGGTGCATGCTCTTGAAATATCAAAGGATGATGATGATAAATTTAATGAATATCTTCAGGAGTGG AAAGATGAAGTGGATGATTTCTTGTCTGGGTTGAACGAGCATTTTAAAGTTGAATTTGATCCTGAGACTAATTCTGGTTG GTACAGTAAGAAGATAGCAAAAGCAAGGACCTTAATTGCCAAATGTGAACCAGCACTTTCTCTCCAATTTCAAGATGTGG GATCTGCTTCCTCAATGAATATTATGTTTCATGAAAAACTCTGCTATGAAATAAGGTTGTTGATTAATTTGAAATTTGTT GACATAAAGGCTGCTCGTGATATGCCAATCAATGATCATGATCTACAAATCCTTTTCAAGAAAAGACTTCAGGAGTAGAT AAATGAAGTGAATAAATTCTTAACAGAGATCAGCCTGCAATTTGGAGAAAAGAATCTTGACAAGAGTTCCAATTGGTACC AAAACAAGATAGCAGAATCAAGGACGTTAATTGCCAAACGTTATTCAGCATTTCCCCTCCGCTGTGAAGATGTGGGATAT ACAAAGAAGCAATATCATATTTTTCTCAGTTTTGAAGGAAAAGATACTCAATGTCTTCATGGACGATCAAGGGTTAGAGA GAGAGGGCTCTATTTCACAAGTTCTAATCGGGGCAATTGAAAACTCACAACTTTCAATTATTATTTTCTCGAAAAACTTT GCAAATTCTACCGGGTGTTTGGATGAAGTTGTTAAGATTCTTGAGTGTAAAAAGGAGAAAAATCAGCTAGTTTGGCCTGT CTTTTATAAAGTGGAGCCCTCCGACGTGAGGTATCAAAATAAAAATTATAGAGAGGCTATGGCCAAACATGAAACAAGAT TTGGAAAAGAGATGGTGAAGAACTGGAGATCAGCTTTGCACGAAGTCAGTGGCTTCAATGCTTTCCCATACAAGAAAGAC AGTGGGTACGTTATATGCTTAATTTCAACTACTTTTATTTTAACATATAACTAATGTGATAAATTGCCTTGCTTTATCCG AAGGTCTTGAATTTTTAAAAATAAATTTTGCTTTATTTTGATATGCTTTGTATATGATTTATGTAGGTATGAAAGTGATT TTATTCAAAGTATCGTAAAAGCTGCCACCAAAATTAGAGATGGTTCGTAAGCATGGATATGGTGACAATAAGAAAGACTG CATCTTCAGAGTGTTTGCTCTCAACTGTTGGTGTTGGATTGAAGTTGTTTTGTATTGGTACGTAATAGGTGTTTTTTCTG TCATGTTTTAAACCCAAGCAACTGATATATCCTGCCTGCCACTTTGGAGCATAAAATTGGGAAACATCCACATATTTCAT TCTTATGATGCCACATCAAAAGCGATTCACCTGAATCTTGTTTACAAGTTGTGATACATTCACACTCCTCTTTCTTTTAC AATCTATTTTCACCTTTTTTCCTTCCTATCTCTCTCTGCATTTCCTATTACATCACATATCATGTCACTCATTTCTCTTT CTATTCTTACAATTTTACTAGGGTGGAGGTGGATTTGGAATCTGTATGCAAACTTTTCCCTTGTGAATCACCATGTCCAA ATACAGCATCTTCATTTAGCATGTGGATCATCATTCACCACCACATATATTTCCCATTGATAAACCCAGAACACTTTGAA TTAAACCCCCACCACTATGGAAATAATCAGATAGACAACTAGCTCCACAAAAATCTTAAAAACTGATTCACGAAGCCATC AACACAAATTCTAATTCCTTCCAAATTCCAATACTTACAGATAATGACAAACCTCTAGGCAATTAGACAAAGCCAGTCAT GGGAAAAAAATCCCTCACACTTCAAAGAAAAGAAGAAATTCCAGTCCAAGAGAGGTCCTAGAGACAGAGATTAATAGGCA AACCTTCCCTACACTGGCCAATTCAACAAAGATCCACCAAATCTGACAAATGCAAGAACACCAACATTTCAGCAACATTG CAGCTTCTGCCGGGAGACACTCCAAAAAATTGAACAAAATTGACTCTGTCTTCACGGTTCAACAACTCTGTAAACGAGAA GGAAACCACCAGACAGCAACAAACACCAATTAATATTATAGACTCATCTCAAACCTCATACTGCTCAAACACCCCTTCAA TTTGACAAGGAACAAGCACGAACAACAGCGGTACTTAGAGTCTTAGACGATTAGATTGCATTTGCTTTACCAAGCCCTTA ACACCCACATCGTCCAATCGCTTACCCATCAAGAAGGCAAGTCTCGCTCTCGTCACAACGCTAGAGGATTCCTGAGCCTT CGGCAAAGTTAGAGGATTATCTCTAGCAGTGGAAACCACCAACACCTCCAGCAAACCAGAACCACTGCAACCAAAACAGC AAAAGCCTTCTTTTTCCTTCCTCTTCCGAACAATTTCCTAGACCGACCTCTTTTCCTACGAACGCTAAAGCCAGTATCTT CCATGCTTGCTTCACAAGACTTGAATTTTCCTCTGTTTCAAATGCTTGCTCAGCCATCAATGTGACCTTCAATTTCCCTT GACTTGCTTCTGCTGCCGCTAGCTTTGTCTCCGATGCGGCCTCAGATTCCCTCTGTGACGCCTCTGCCGCTCTCCTTTCT TGTTTCTTCTTCTGTCTTCTCTCATCAAGTTCTCTCAATTGAGCTTTAATCAACTCTTTTTCCTTTCTGTACCATGCATT CACCCTCAGGAATTCTCCAGCCATCTCCTTCAAATGCTATTTGCTATAGGATTCAAGGTTAGGGCACCTGAATCGGTGTC ATGATACCAATGATAGAACCCTGATTTTATTCTATGATAGAACCCTAATTCCAAATTAGGGAATCAGAGAGAATTACAAG TGAAATGATACCCAAAATGTAAAAAAGATGATCCATAATACTCTCTACTCCCTCTTATTTATGGCAACATGCCTAACTCA TTAACAAACTACCAACACTTCTTAACTAACCCCTATTCCCTATCATACAGCCTATCACCAAGCATAATTTTCAAAGTGCT ACTATTTCCATGGGTCACATACCTTCTTTAGTGGATAATTTATAGTCCTTGAAAAAGTAATGAGGTTACAATGCATAGTC ATGAAAATTTTCCTATGTTACTACTTACTTATATCATTGATTTCCAATGTAAAATAGCTTCCATTTGTTTCAAGAAAACT GAAATAGACACTCACAGATTCACTGAGAGGGGCAGAGTTTCCTGAGCGTAATGGAGGTGCGTCTGGTCTGGCTCAATTCC TGGCCCTGCCACGATTGAAAACCCGGTCTGCGATTAATCTCGTGCTTCCACCGATACCTCGCTTCCCCTGACATCAGAAC CAGAGAACCCGGCAAAAGCAAAACCGGAACCGATTCCGGACCCGAACCCGGTTCATCCGATTCCGGTACCGGCGAGAAAT GCATGACGCAGGAGGATTCCAAGGAGACGATGGCGATGCCGTCGTCGAAGCGCAAGAGGTCGACGTGAGCAGCAATGCCC TCGCCGGGGTGGTAGACGTTGACGATCATCTGGTCGAACAAGGGTTCTCTTTGGAAGGGGAACGTGGTGGTGGTGGGTTG GGTTGGGGCGGAGCGGCGGATGGAGTGGGCGAGGGTTTGGGCCCATGGTGGGAGGTTTTGGTGGCCGAAGCGCATGGCTT GGTTGATTTCAGGGTGGTGGTCGGAGAACCAGTTCTCGGATTCGATGGCGGAGAGTAAGAGGGATTGGTGGTGAATTGAG AGGAAGTGTGTGCAGAGCCATAAGCCTTTCACTTCCTCAATGCATTTCCATTCTCGATCGCTGTCGCCGGAATCGGAATC GGAATCGGAGGAAGATTCGCCGAACACTTGTTCCAGTATCGTCTTCTGCTGTTGCTGCTCCTCCTCCTCCATCTTTGACT TTGACTTTCTCAATCCTACATGGTGAAGAAGAAGGGTTGCTACTTTTTTCTGGGCCAAATGTGGGCTTGTAATGGGCCAG TTTCAATATGCTCTGATCCAATGCTTAGGTTTGATGAAATTTTTGGACTCTAGCTTGATTTTTAATTTCATATTTAATCA AATATATTCAGTTAAATTAAATAAAAAAATGTTACTGAATTAAATCCATATAGGTGTCAAACTAAACTAGTATATTGATT AGTGGGTATTGTTGTTGTCTTCCCATCTGAATATATTTTCCGGCAGCAAGGTGGTGTGATGTTGACAAGGACTAGTACGA GAAATGAAGTATCTACAAAAAAGCATGCTCAAATCAATACGAGAGTAA
CDS sequence (LotjaGi1g1v0038200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGGATATACAAAGAAGCAATATCATATTTTTCTCAGTTTTGAAGGAAAAGATACTCAATGTCTTCATGGACGATCA AGGGTTAGAGAGAGAGGGCTCTATTTCACAAGTTCTAATCGGGGCAATTGAAAACTCACAACTTTCAATTATTATTTTCT CGAAAAACTTTGCAAATTCTACCGGGTGTTTGGATGAAGTTGTTAAGATTCTTGAGTGTAAAAAGGAGAAAAATCAGCTA GTTTGGCCTGTCTTTTATAAAGTGGAGCCCTCCGACGTGAGGTATCAAAATAAAAATTATAGAGAGGCTATGGCCAAACA TGAAACAAGATTTGGAAAAGAGATGGTGAAGAACTGGAGATCAGCTTTGCACGAAGTCAGTGGCTTCAATGCTTTCCCAT ACAAGAAAGACAGTGGGTATGAAAGTGATTTTATTCAAAGTATCGTAAAAGCTGCCACCAAAATTAGAGATGGTTCGTAA
Protein sequence (LotjaGi1g1v0038200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWDIQRSNIIFFSVLKEKILNVFMDDQGLEREGSISQVLIGAIENSQLSIIIFSKNFANSTGCLDEVVKILECKKEKNQL VWPVFYKVEPSDVRYQNKNYREAMAKHETRFGKEMVKNWRSALHEVSGFNAFPYKKDSGYESDFIQSIVKAATKIRDGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 4 | 129 | 126 | 1.3E-12 | ||
| Gene3D | 7 | 157 | 151 | 3.2E-46 | ||
| SUPERFAMILY | 12 | 129 | 118 | 4.32E-26 | ||
| PANTHER | 15 | 153 | 139 | 3.7E-46 | – | |
| PANTHER | 15 | 153 | 139 | 3.7E-46 | – | |
| Pfam | 15 | 151 | 137 | 1.9E-30 | ||
| ProSiteProfiles | 20 | 129 | 110 | 17.768 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
Expression pattern of LotjaGi1g1v0038200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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